Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05566 and RBAM_032390
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:03
# Commandline: needle
# -asequence dna-align/BSNT_05566___ywoF.1.9828.seq
# -bsequence dna-align/RBAM_032390___ywoF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05566___ywoF-RBAM_032390___ywoF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05566___ywoF-RBAM_032390___ywoF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05566___ywoF
# 2: RBAM_032390___ywoF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1446
# Identity: 1042/1446 (72.1%)
# Similarity: 1042/1446 (72.1%)
# Gaps: 78/1446 ( 5.4%)
# Score: 3639.0
#
#
#=======================================
BSNT_05566___ 1 ATG---AGAAAATGGT--ATTTTATTCTTTTGGCGGGTGTTTTAACGTCT 45
||| |.|||||..| |||||||.| ||||..|||.|..|..|.
RBAM_032390__ 1 ATGAAAATAAAATTATCGATTTTATCC-----GCGGCGGTTCTGGCCGCA 45
BSNT_05566___ 46 GTCATCCTCGCTTTCGTTT----ATGATAAGACAAAAGCGAATGA----- 86
|.|||...|||.||.||.| | ||.|||.|.||.|||||
RBAM_032390__ 46 GGCATTACCGCCTTTGTCTGGCCA----AAAACAGAGGCCAATGAAAAAA 91
BSNT_05566___ 87 ---GGAAGGA--TCTGGGGATTATCTGTATGTTT----CGCTAAATGGCA 127
.||.||| .|| ||||||||| ||| .||||
RBAM_032390__ 92 TGCAGACGGACGCCT----------TGTATGTTTCTCCCGC----AGGCA 127
BSNT_05566___ 128 GTGATCAAAATGAAGGAACAAAAGAAAAACCGTTTCGTACATTGGCACAC 177
|.||.||||||||||||||.||||||||.|||||.||.|||||...|||.
RBAM_032390__ 128 GCGACCAAAATGAAGGAACGAAAGAAAAGCCGTTCCGCACATTAAAACAT 177
BSNT_05566___ 178 GCATCTGAGAAGGCTGCTGCCGGCACAACTGTCATGATTCGGGAGGGCAC 227
||..||||.|||||.|..|||||.|||||.||..||||||||||.||.||
RBAM_032390__ 178 GCGGCTGAAAAGGCAGAGGCCGGAACAACCGTATTGATTCGGGAAGGGAC 227
BSNT_05566___ 228 GTATCATGAGACCCTTGATGTAAAGCACAGCGGTACGGACGGAAAGCCTA 277
|||..||||.||..||||.||||||||.|||||.||||.||.||||||.|
RBAM_032390__ 228 GTACGATGAAACGTTTGAAGTAAAGCATAGCGGCACGGCCGAAAAGCCGA 277
BSNT_05566___ 278 TCACATTCCGAAACTATGAAAATGAAAACGTCGTGATTAGCGGTGAATCC 327
|.|||||.||.||||||.|.|||||..|.|||...||.|||||..||||
RBAM_032390__ 278 TTACATTTCGGAACTATCAGAATGAGCATGTCTCAATCAGCGGCAAATC- 326
BSNT_05566___ 328 ATTACG----AACGCTGAATATGAAACACCGCTTATTCGTATTCACGATA 373
|.|| ||.|| ||.|.||||||.|||.|.||||..||.|.|.|||
RBAM_032390__ 327 --TGCGCCAAAAAGC-GATTCTGAAACTCCGTTAATTCAAATCCGCAATA 373
BSNT_05566___ 374 AACATGACATTGCCA-TCAGCGGTTTAACAATTCAAGATCTTTCTGTTTC 422
||||..|||||.||| ||| |||..|.||..||.|..||||.||.||.||
RBAM_032390__ 374 AACAGTACATTACCATTCA-CGGCGTTACGCTTGAGAATCTCTCCGTATC 422
BSNT_05566___ 423 ATCTGAGGAAGCAACTGCTATAGGGATTTATGTATCAGGGTCCAGCAGTC 472
|||.||.||.|||||.||.||.|||||.|..||..|.||.||.|||||||
RBAM_032390__ 423 ATCAGAAGATGCAACGGCCATGGGGATCTGCGTCACCGGATCAAGCAGTC 472
BSNT_05566___ 473 ATATTGCCATTAAGGATAATCACATCCGGGGTATTAAGACAACTGCGGAT 522
||||...||||.|.|..||.||.|||||....|||||.||.||.||.|||
RBAM_032390__ 473 ATATCAACATTGACGGCAACCATATCCGAAACATTAAAACCACGGCTGAT 522
BSNT_05566___ 523 GAAGGAAATGCTCACGGAATCGCAGTTTATGGGACTGGCAGCATGAAAGA 572
||.||||||||.|||||.|||||..||||.||.||.|||..||||||.||
RBAM_032390__ 523 GAGGGAAATGCACACGGTATCGCGTTTTACGGCACAGGCGCCATGAAGGA 572
BSNT_05566___ 573 ------CATC-CAAATCGAGGACAATACAGTTGAGAAACTGACGCTTGGA 615
|||| ||||| |||||.|||||.|||||||||||.||.
RBAM_032390__ 573 TGTCAGCATCACAAAT-------AATACGGTTGAAAAACTGACGCTCGGC 615
BSNT_05566___ 616 GCGAGTGAAGCAGTTGTGCTGAACGGTAATATCGACGGCTTCACAG-TTG 664
||.||.|||||.||.|||||||||||.|||.|.|||||.||.| || |||
RBAM_032390__ 616 GCAAGCGAAGCGGTCGTGCTGAACGGGAATGTTGACGGATTTA-AGATTG 664
BSNT_05566___ 665 CAGGCAATGTGGTCCGCAACAATAACAACATCGGGATTGATCTAATTGGT 714
|.||||||....||||..||||||||||.|||||||||||..|.||.||.
RBAM_032390__ 665 CCGGCAATACCATCCGGGACAATAACAATATCGGGATTGACGTGATCGGA 714
BSNT_05566___ 715 TATGAGGGAACCGCGGATAAAAACGATTACGTGCGAAACGGAATCGTAGA 764
||.||.|||||..|..|..|||||||.||.|.|||||||||..||.|.||
RBAM_032390__ 715 TACGAAGGAACGTCCAAGCAAAACGACTATGCGCGAAACGGCGTCATTGA 764
BSNT_05566___ 765 AAACAATACAGTTTATCAAAACTCGACTTACGGCAATCCTGCTTATGGAG 814
|||||||||.||....||.|||||..|||||||.|||||.|||||.||||
RBAM_032390__ 765 AAACAATACGGTGAGCCATAACTCTTCTTACGGAAATCCCGCTTACGGAG 814
BSNT_05566___ 815 ATGAATACTCAGCGGGCGGGATTTATGTCGATGGAGGACACAAGA--TCG 862
|||||||.|||||||||||.|||||.||.||.||.| ||.||.| |.|
RBAM_032390__ 815 ATGAATATTCAGCGGGCGGTATTTACGTTGACGGCG--CAGAACATGTGG 862
BSNT_05566___ 863 AAATTAAGAACAACACAGTTTACGATAACGATATTGGGATTGAAGCAACG 912
|.||||||||.|||||.||||||.|.||.|||.|||||||||||||.||.
RBAM_032390__ 863 ACATTAAGAATAACACCGTTTACAACAATGATCTTGGGATTGAAGCCACC 912
BSNT_05566___ 913 TCTGAACACAAAGGAAAGTATGCAAATGCCATTCAGATCACTGACAACAA 962
|||||.||.|||||.||.||.|||...|..||.|.|||.||.||.|||||
RBAM_032390__ 913 TCTGAGCATAAAGGGAAATACGCACGAGATATCCGGATTACGGATAACAA 962
BSNT_05566___ 963 AGTGTACAACAATGCGTACACCGGTATTTCAATCGGAGGATATGACAAAA 1012
.||||||..||||||.|||||||||||||||||||||||.|||||||..|
RBAM_032390__ 963 GGTGTACGGCAATGCTTACACCGGTATTTCAATCGGAGGCTATGACACGA 1012
BSNT_05566___ 1013 AGCGGGGCGGCACCAGCAATTCTCTGATTGCCCGCAATATTATGTACCGG 1062
|.||.||||||||||.||||||..||||.||.|..||.||||||||.||.
RBAM_032390__ 1013 AACGCGGCGGCACCATCAATTCGGTGATCGCTCATAACATTATGTATCGA 1062
BSNT_05566___ 1063 AATGACACAAAGGGACTGTACGGCGGACAGCTGCTGCTGCAGTACGATAC 1112
||||||||.||||..||..|||||||.|||||||||||||||||||..||
RBAM_032390__ 1063 AATGACACGAAGGACCTTGACGGCGGCCAGCTGCTGCTGCAGTACGGCAC 1112
BSNT_05566___ 1113 GAAAAACAACACAATTGAAAAGAATATATTGACGGCCGGTGATTC-CAGA 1161
.|||...|||||.||.|||||.||.||..|||||||..|.|.||| |.||
RBAM_032390__ 1113 AAAAGGGAACACGATCGAAAAAAACATCATGACGGCAAGCGGTTCACGGA 1162
BSNT_05566___ 1162 TTATTTATCGGAAACGATTTTACAGAAAATGAAGGAAATACGGTCAATCA 1211
|| |||||||.|||.||||.|||..||||.|||||.|||||.||.|||||
RBAM_032390__ 1163 TT-TTTATCGCAAATGATTATACGAAAAACGAAGGCAATACCGTTAATCA 1211
BSNT_05566___ 1212 TAACGTGTACCACAAGGAAGCGGATCAAGACGGCATTTGGATGTGGAAAA 1261
||||||.||.|||||.|||||||...|.|||||||||||||..|||||.|
RBAM_032390__ 1212 TAACGTCTATCACAAAGAAGCGGGAAAGGACGGCATTTGGAATTGGAAGA 1261
BSNT_05566___ 1262 AGAAAGAATATGATTCATTTTCGTCGTATCTAAAAGCAACAAAAAACGAT 1311
|.|.|||||||||||||||..|..||||.|.|||||.|||...|||||||
RBAM_032390__ 1262 ACAGAGAATATGATTCATTCACAGCGTACCAAAAAGGAACGGCAAACGAT 1311
BSNT_05566___ 1312 CAGCAATCCATATATGCCGATCCGATGTTTCGTGATGAAGCGTCCTATGA 1361
..|.|.|||||.|||||.||.|||||||..|||||.|||.||||.|||||
RBAM_032390__ 1312 TCGGATTCCATTTATGCGGACCCGATGTACCGTGACGAATCGTCTTATGA 1361
BSNT_05566___ 1362 TTTTTCGTTAGATCCTGATTCACCTGCGCGGCCTGTCATTGAATAA 1407
.|||.|.|||.|.||.|..|||||.||.|.|||.||||||.|.|||
RBAM_032390__ 1362 CTTTACATTAAAGCCCGGATCACCGGCCCTGCCCGTCATTCAGTAA 1407
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