Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05357 and RBAM_032350
See
Amino acid alignment /
Visit
BSNT_05357 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:49
# Commandline: needle
# -asequence dna-align/BSNT_05357___yvkA.1.9828.seq
# -bsequence dna-align/RBAM_032350___yvkA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05357___yvkA-RBAM_032350___yvkA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05357___yvkA-RBAM_032350___yvkA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05357___yvkA
# 2: RBAM_032350___yvkA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1355
# Identity: 1028/1355 (75.9%)
# Similarity: 1028/1355 (75.9%)
# Gaps: 37/1355 ( 2.7%)
# Score: 3847.5
#
#
#=======================================
BSNT_05357___ 1 ATGAGCTCAAGAAAAGAATGGGCGCTGATCGTCTCGCTATTATTGGGGGC 50
|||.|.||||..||||||||||||||||||||.|||||.||..||||.||
RBAM_032350__ 1 ATGGGTTCAAAGAAAGAATGGGCGCTGATCGTTTCGCTTTTGCTGGGAGC 50
BSNT_05357___ 51 CATTCTGGTTCCCATTAACTCAACGATGATCGCGGTCGCGCTCTCATCTA 100
|||.||.|||||.||.||.||.|||||||||||.|||||.||.|||||.|
RBAM_032350__ 51 CATACTCGTTCCTATCAATTCTACGATGATCGCAGTCGCCCTTTCATCCA 100
BSNT_05357___ 101 TTTCC----CATACGTATAACGAGTCCATCGCAAGCATCACTTGGGTGGT 146
||||| |||.| |.|||.||.||.||.||||||||.|||||.||
RBAM_032350__ 101 TTTCCCGCTCATTC----AGCGAATCAATTGCCAGCATCACATGGGTAGT 146
BSNT_05357___ 147 TACCGTTTATTTAATCGTGATGGCAGTCACACAGCCGATTGCAGGAAAGC 196
.|||||.|||||||||||||||||.||.||||||||.|||||.||.||.|
RBAM_032350__ 147 GACCGTGTATTTAATCGTGATGGCCGTGACACAGCCCATTGCCGGCAAAC 196
BSNT_05357___ 197 TCGGTGACATGTACGGCAATAAAACAATGTACTTATGGGGAGTCGGCCTT 246
|||||||.||||||||.||.||||.||||||.||||||||.|||||||||
RBAM_032350__ 197 TCGGTGATATGTACGGAAACAAAAAAATGTATTTATGGGGCGTCGGCCTT 246
BSNT_05357___ 247 TTTCTAATCGCATCTCTAGGCTGCGCCCTTTCACCGAGTCTGCTCCTGTT 296
|||||.||||||||..|.||.||||||||.||.||.|||||..||.|.||
RBAM_032350__ 247 TTTCTCATCGCATCATTGGGGTGCGCCCTCTCGCCAAGTCTTTTCTTATT 296
BSNT_05357___ 297 AATTGTCTTTCGGGCATTGCAGGCTGTCGGCGGGGCATTGCTTACGCCAA 346
.|||.||||.|||||..|.|||||||.||||||.||.|||||||||||||
RBAM_032350__ 297 GATTTTCTTCCGGGCGCTTCAGGCTGCCGGCGGCGCTTTGCTTACGCCAA 346
BSNT_05357___ 347 ACAGCATTGCCATTATCCGGCATGTTGTTTCTGAAAAACGCCTACCGAAA 396
|||||||.|||||.|||||.|||||.||.|||||||||||.||.||||||
RBAM_032350__ 347 ACAGCATCGCCATCATCCGCCATGTCGTGTCTGAAAAACGGCTTCCGAAA 396
BSNT_05357___ 397 GTGTTTGGATTTTTCGGACTGGGCGCAGGACTTGGTGCAGCACTCGGGCC 446
||.||.||.||||||||.||.||.||.||.||.||.||.||.|||||.||
RBAM_032350__ 397 GTATTCGGCTTTTTCGGCCTCGGTGCCGGGCTGGGCGCGGCTCTCGGTCC 446
BSNT_05357___ 447 TTTTATCGGCTCTATACTGATTGACAGCTTCAGCTGGCATTCGATTTTTT 496
.||||||||||||.|..|.|||||.||||||||||||||||||||.||||
RBAM_032350__ 447 GTTTATCGGCTCTCTTTTAATTGAGAGCTTCAGCTGGCATTCGATCTTTT 496
BSNT_05357___ 497 GGGTCAACATCCCGTTCCTCGCCATTGCTTTATTTACGGCATTAACGATG 546
||||||||||.|||||.||.||.||.||..|..|.|||||||||..||||
RBAM_032350__ 497 GGGTCAACATTCCGTTTCTTGCAATCGCACTCGTGACGGCATTAGTGATG 546
BSNT_05357___ 547 TTTCCTCAATATAAAGAAAATAAATCTGACGCGCCGCTGGATATCATCGG 596
||||||.|||||||||||.|.|..||||||||.|||||.|||||||||||
RBAM_032350__ 547 TTTCCTAAATATAAAGAAGAAACGTCTGACGCTCCGCTTGATATCATCGG 596
BSNT_05357___ 597 CTCTCTCTTGCTTGCAGGCAGCATCGTTTCAATTATCCTGCTGACGAAAA 646
.||..|.||||||||.||.|||||.||.||.|||||.||.||||||||||
RBAM_032350__ 597 GTCCGTTTTGCTTGCCGGAAGCATTGTATCTATTATTCTTCTGACGAAAA 646
BSNT_05357___ 647 ATG-AGGCTCCATGGGGATATGCGGTATACAGTGTATTG---ATACTTCT 692
||| |.||| |.|.|||.|||..|||.||| |.|.|| ||.||..|
RBAM_032350__ 647 ATGAAAGCT-CTTTGGGCTATTGGGTGTAC---GCACTGCTCATTCTCGT 692
BSNT_05357___ 693 TTTTGTTCCGCTTTTTTTCAGAAGAGAAAAACGTACCAAGCACCCTATCA 742
.|||||||||||.||||||||..|.||....||.||.||.||.||.||.|
RBAM_032350__ 693 ATTTGTTCCGCTATTTTTCAGGCGGGAGCTGCGCACGAAACATCCGATTA 742
BSNT_05357___ 743 TTGACTTTGCACTGTTTAAAAGCTCAACCTTTACAAATGCGAATCTATCA 792
||||.||||..||||||||||.|.|.||||||||.|..||.|||||.||.
RBAM_032350__ 743 TTGATTTTGACCTGTTTAAAAACACGACCTTTACGAGCGCCAATCTGTCG 792
BSNT_05357___ 793 GTCTTGTTAAGCAATTTGATGATGTATGCCGTCTTATTGATTATGCCGTT 842
||..|||||||||||||.||||||||.|||||.|||||||||||||||.|
RBAM_032350__ 793 GTTCTGTTAAGCAATTTAATGATGTACGCCGTGTTATTGATTATGCCGCT 842
BSNT_05357___ 843 ATTTATGACGAACCAATTTGGGCTTAATACGTCTAACAGCGGGATGGCGC 892
.||||||||...|||.||..|..|.||.|||||..|||||||.|||||||
RBAM_032350__ 843 CTTTATGACCGGCCACTTCAGCATGAACACGTCGCACAGCGGCATGGCGC 892
BSNT_05357___ 893 TTTCTGTATTTTCGATCTTCATGTCAGCCAGCAACTGGGTGGGCGCGCAG 942
|.||.||.|||||..|.||||||||.|||||||||||||..||.||.|||
RBAM_032350__ 893 TGTCAGTCTTTTCTGTTTTCATGTCCGCCAGCAACTGGGGCGGAGCTCAG 942
BSNT_05357___ 943 CTCCATCACAAATGGGGAGCCAAAAAAATCATTTTTCTTTCATTTGCCAT 992
||.|||||.||||||||.||...||.|||.||||||||.||.||.|...|
RBAM_032350__ 943 CTGCATCAGAAATGGGGCGCGCGAAGAATGATTTTTCTGTCCTTCGGGCT 992
BSNT_05357___ 993 GATGGCTGGTGCGAATCTATTATTTTTGCT----GTTAAGCAGCTCGCAT 1038
||||||.|..||.|||||.||||||||||| |||.| .||.|||
RBAM_032350__ 993 GATGGCCGTAGCCAATCTCTTATTTTTGCTTTTGGTTTA----TTCCCAT 1038
BSNT_05357___ 1039 TCTGTCTTATTCCTCATGCTCTCTCTTATCCTTGGCGGGCTCGCTTCCGG 1088
||.||....||.||.|||...||.|||||..|.||.||..||||.||.||
RBAM_032350__ 1039 TCCGTTCCGTTTCTTATGGCATCGCTTATAGTCGGAGGCATCGCGTCAGG 1088
BSNT_05357___ 1089 AGTCGGTCTGACCAGCATGCAGGTGTCATCCCTTGCCACAGTAGACCCCG 1138
.|..||.|||||.|||||||||||.||.||.|||||.||.|||||.||.|
RBAM_032350__ 1089 TGCGGGGCTGACGAGCATGCAGGTATCTTCTCTTGCGACGGTAGAACCGG 1138
BSNT_05357___ 1139 GAATGTCAGGAGTGGCATCCGGGATTTTCTCGACCTTCCGTTATTTCGGA 1188
|.|||||.||..|.|||||||||||||||||.||||||||||||||||||
RBAM_032350__ 1139 GCATGTCCGGCATCGCATCCGGGATTTTCTCCACCTTCCGTTATTTCGGA 1188
BSNT_05357___ 1189 AGCATCATTTCATCAGCCTTAATTGGCCTGATTTCGGGATATCACATCCT 1238
|||||.|||||.|||||..|.||.||..|.||.||.||.|.|||.||.||
RBAM_032350__ 1189 AGCATTATTTCTTCAGCACTGATCGGTTTAATCTCCGGGTTTCATATTCT 1238
BSNT_05357___ 1239 ATTTATGATTCTCTTTGCT----GTATCCATCATCGGCGTTTTTGTTTCA 1284
.|||||.|| .|||.| ||.||..|.||||||.|.||.||.||.
RBAM_032350__ 1239 GTTTATCAT----ATTGATCGGAGTTTCTGTGATCGGCTTGTTCGTATCG 1284
BSNT_05357___ 1285 TTGGGCATCAAATCTGATGAAACGGCACGGATAGAAAAAA----ACTCAG 1330
.|.||.|||||.||.|..|||||.|..|.|| .||||||| |.||.|
RBAM_032350__ 1285 CTTGGTATCAAGTCCGGGGAAACCGTTCAGA-CGAAAAAAAGCCATTCGG 1333
BSNT_05357___ 1331 CGTAA 1335
|||||
RBAM_032350__ 1334 CGTAA 1338
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.