Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_05351 and RBAM_032320

See Amino acid alignment / Visit BSNT_05351 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:48
# Commandline: needle
#    -asequence dna-align/BSNT_05351___csbA.1.9828.seq
#    -bsequence dna-align/RBAM_032320___csbA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05351___csbA-RBAM_032320___csbA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05351___csbA-RBAM_032320___csbA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05351___csbA
# 2: RBAM_032320___csbA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 238
# Identity:     190/238 (79.8%)
# Similarity:   190/238 (79.8%)
# Gaps:           8/238 ( 3.4%)
# Score: 780.0
# 
#
#=======================================

BSNT_05351___      1 TTGATTACAAAAGCCGTTTTTGCATTGTTTTTCCCTTTTATGCTTGTTGT     50
                     .|||||||||||||||||||||||||.|.|||||||||||||||.||.||
RBAM_032320__      1 GTGATTACAAAAGCCGTTTTTGCATTATGTTTCCCTTTTATGCTGGTCGT     50

BSNT_05351___     51 TCTATTTACTAGAGTCACCTTTAATCATTATGTGGCGATCGCTTTAACAG    100
                     .||.|||||..|.|||||.|||||.||.|||||||||||||||.|.||||
RBAM_032320__     51 CCTTTTTACGCGCGTCACGTTTAACCACTATGTGGCGATCGCTCTCACAG    100

BSNT_05351___    101 CTGCATTGCTGTTTGCCTCTTATTTAAAAGGCTATACAGAAACGTATTTT    150
                     |.|||.||||.||.||.||.||||||||.||.||.||.||||||||||||
RBAM_032320__    101 CCGCACTGCTTTTCGCATCCTATTTAAAGGGTTACACCGAAACGTATTTT    150

BSNT_05351___    151 ATTGTAGGATTGGATGTTGTGTCTCTTGTGGCTGGCGGACTGTACATGGC    200
                     ||.||.|||||||||||.||.||.||.|||||.||.||.|||||||||||
RBAM_032320__    151 ATCGTTGGATTGGATGTCGTATCGCTGGTGGCCGGAGGGCTGTACATGGC    200

BSNT_05351___    201 CAAAAAAGCTGCAGAGAAAAAAGAAGAATAA-------    231
                     ||||||||..||||| .||||||||..|.||       
RBAM_032320__    201 CAAAAAAGAAGCAGA-CAAAAAGAAAGACAATGCCTGA    237


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.