Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05349 and RBAM_032310
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:48
# Commandline: needle
# -asequence dna-align/BSNT_05349___uvrB.1.9828.seq
# -bsequence dna-align/RBAM_032310___uvrB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05349___uvrB-RBAM_032310___uvrB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05349___uvrB-RBAM_032310___uvrB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05349___uvrB
# 2: RBAM_032310___uvrB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1990
# Identity: 1696/1990 (85.2%)
# Similarity: 1696/1990 (85.2%)
# Gaps: 8/1990 ( 0.4%)
# Score: 7275.0
#
#
#=======================================
BSNT_05349___ 1 GTGAAAGATCGCTTTGAGTTAGTCTCGAAATATCAGCCCCAGGGAGATCA 50
|||||||||||.||||||||||||||||||||||||||||||||||||||
RBAM_032310__ 1 GTGAAAGATCGTTTTGAGTTAGTCTCGAAATATCAGCCCCAGGGAGATCA 50
BSNT_05349___ 51 GCCGAAAGCCATTGAAAAGCTTGTAAAAGGAATTCAGGAGGGCAAGAAGC 100
||||.||||.|||||.||||||||.|||||.||.|||||.||||..||.|
RBAM_032310__ 51 GCCGCAAGCGATTGAGAAGCTTGTCAAAGGCATACAGGAAGGCAGAAAAC 100
BSNT_05349___ 101 ATCAGACTCTGCTGGGTGCGACAGGAACTGGGAAAACATTTACGGTGTCT 150
|.||||||||..|||||||||||||.||.||.|||||.|||||.|||||.
RBAM_032310__ 101 ACCAGACTCTAATGGGTGCGACAGGGACGGGCAAAACCTTTACCGTGTCC 150
BSNT_05349___ 151 AATTTGATTAAAGAAGTCAATAAGCCGACTCTCGTGATTGCCCATAACAA 200
|||.|||||||||||||.|||||.|||||.||.||.||||||||||||||
RBAM_032310__ 151 AATCTGATTAAAGAAGTGAATAAACCGACACTGGTCATTGCCCATAACAA 200
BSNT_05349___ 201 AACCCTTGCTGGACAGCTTTACAGTGAGTTCAAGGAATTTTTTCCGAACA 250
||||||.||.||||||||.|||||.|||||.|||||.|||||.|||||||
RBAM_032310__ 201 AACCCTAGCCGGACAGCTGTACAGCGAGTTTAAGGAGTTTTTCCCGAACA 250
BSNT_05349___ 251 ATGCTGTCGAGTATTTTGTCAGCTACTATGATTATTATCAGCCGGAGGCG 300
||||||||||.||||||||||||||.||.|||||.|||||||||||||||
RBAM_032310__ 251 ATGCTGTCGAATATTTTGTCAGCTATTACGATTACTATCAGCCGGAGGCG 300
BSNT_05349___ 301 TATGTGCCTCAAACGGATACATTTATAGAGAAAGACGCTAGTATTAATGA 350
||.|||||||||||||||||.|||||||||||||||||.||.||||||||
RBAM_032310__ 301 TACGTGCCTCAAACGGATACTTTTATAGAGAAAGACGCAAGCATTAATGA 350
BSNT_05349___ 351 TGAAATTGATAAACTGAGACACTCCGCCACATCAGCTTTGTTTGAGCGCA 400
|||||||||||||||||||||||||||.|||||..||.|||||||.||.|
RBAM_032310__ 351 TGAAATTGATAAACTGAGACACTCCGCGACATCCTCTCTGTTTGAACGGA 400
BSNT_05349___ 401 GAGATGTCATTATTATTGCGAGTGTGTCTTGTATATACGGCCTCGGTTCG 450
||||||||||||||||.|||||||||||.||.||||||||.||||||||.
RBAM_032310__ 401 GAGATGTCATTATTATCGCGAGTGTGTCATGCATATACGGTCTCGGTTCA 450
BSNT_05349___ 451 CCTGAGGAATACCGGGAAATGGTCGTGTCACTGCGGA-CTGAAATGGAAA 499
|||||.|||||||||||||||||||||||.|| |.|| |.||||||||||
RBAM_032310__ 451 CCTGAAGAATACCGGGAAATGGTCGTGTCGCT-CAGACCGGAAATGGAAA 499
BSNT_05349___ 500 TTGAGCGCAATGAGCTGCTCAGAAAACTTGTAGACATCCAATATGCCCGC 549
|||||||.||.||||||||.|||||.|||||.||.|||||.|||||||||
RBAM_032310__ 500 TTGAGCGGAACGAGCTGCTGAGAAAGCTTGTGGATATCCAGTATGCCCGC 549
BSNT_05349___ 550 AACGATATCGACTTTCAGCGCGGTACATTTCGTGTGCGCGGGGATGTAGT 599
||.||||||||||||||||||||.||.||.||.||||||||.||.||.||
RBAM_032310__ 550 AATGATATCGACTTTCAGCGCGGGACGTTCCGCGTGCGCGGAGACGTTGT 599
BSNT_05349___ 600 GGAAATCTTTCCGGCATCCCGTGATGAGCATTGTATCAGAGTTGAATTTT 649
|||||||||.|||||.||||||||.||.||||||||||||||.|||||||
RBAM_032310__ 600 GGAAATCTTCCCGGCTTCCCGTGACGAACATTGTATCAGAGTGGAATTTT 649
BSNT_05349___ 650 TCGGTGACGAAATCGAACGGATTCGGGAAGTGGATGCGCTGACAGGAGAA 699
||||.||.|||||.||.|||||..|.||.||.||.||..||||.||||||
RBAM_032310__ 650 TCGGAGATGAAATTGAGCGGATCAGAGAGGTCGACGCTTTGACCGGAGAA 699
BSNT_05349___ 700 ATTCTCGGCGACCGAGATCATGTTGCGATTTTCCCGGCATCCCACTTCGT 749
||||||||||||||.||.|||||.||||||||||||||.|||||||||||
RBAM_032310__ 700 ATTCTCGGCGACCGTGACCATGTCGCGATTTTCCCGGCTTCCCACTTCGT 749
BSNT_05349___ 750 AACGCGGGCCGAGAAAATGGAGAAGGCGATTCAAAATATCGAGAAGGAGC 799
.||.|||||.||.||.|||||.||.|||||||..|||||.||..||||||
RBAM_032310__ 750 CACCCGGGCGGAAAAGATGGAAAAAGCGATTCTGAATATTGAACAGGAGC 799
BSNT_05349___ 800 TTGAGGAGCAGC-TGAAGGTCATGCACGAAAACGGAAAGCTCCTTGAAGC 848
||||||||| || ||||.||.||||||||||||||.||||||||||||||
RBAM_032310__ 800 TTGAGGAGC-GCTTGAAAGTGATGCACGAAAACGGCAAGCTCCTTGAAGC 848
BSNT_05349___ 849 GCAGCGTTTAGAGCAGCGGACAAGATATGATCTTGAAATGATGCGTGAAA 898
||||||..|.|||||||||||.|||||.|||||||||||||||||.||||
RBAM_032310__ 849 GCAGCGGCTTGAGCAGCGGACGAGATACGATCTTGAAATGATGCGGGAAA 898
BSNT_05349___ 899 TGGGTTTCTGCTCCGGCATCGAGAACTATTCAAGACATTTGACTCTGCGG 948
|||||||.|||||.||.||||||||||||||||||||||||||.||.||.
RBAM_032310__ 899 TGGGTTTTTGCTCAGGGATCGAGAACTATTCAAGACATTTGACACTCCGT 948
BSNT_05349___ 949 CCTCCAGGTTCAACGCCGTATACGCTTCTTGATTATTTCCCAGACGATTT 998
||.||.||.||.|||||.||||||||.|||||||||||.||.||||||||
RBAM_032310__ 949 CCGCCGGGCTCTACGCCATATACGCTGCTTGATTATTTTCCGGACGATTT 998
BSNT_05349___ 999 TATGATCGTGGTGGATGAGTCGCATGTGACAATTCCCCAGGTGCGCGGCA 1048
||||||.||.||.|||||.||.||||||||.|||||||||||||||||||
RBAM_032310__ 999 TATGATTGTCGTTGATGAATCACATGTGACGATTCCCCAGGTGCGCGGCA 1048
BSNT_05349___ 1049 TGTTTAACGGAGACCAGGCGCGGAAACAGGTGCTCGTGGATCACGGCTTC 1098
||||.|||||.|||||||||.|.|||||||||||.||.||||||||.|||
RBAM_032310__ 1049 TGTTCAACGGTGACCAGGCGAGAAAACAGGTGCTTGTCGATCACGGGTTC 1098
BSNT_05349___ 1099 CGGCTTCCATCAGCGCTTGATAACCGTCCGCTTCGTTTTGAGGAATTTGA 1148
||.||.||.|||||||||||.|||||||||||.||.||.|||||||||||
RBAM_032310__ 1099 CGCCTGCCGTCAGCGCTTGACAACCGTCCGCTCCGATTCGAGGAATTTGA 1148
BSNT_05349___ 1149 AAAGCATATGCACAATATCGTGTATGTATCCGCAACACCAGGGCCGTACG 1198
.||.||.|||||||||||||||||.||.||.||.||.||.||.|||||.|
RBAM_032310__ 1149 GAAACACATGCACAATATCGTGTACGTGTCGGCGACTCCGGGACCGTATG 1198
BSNT_05349___ 1199 AGATTGAACATACAGATGAAATGGTCGAACAGATCATTCGTCCGACGGGG 1248
|.|||||.|||||....||||||.|.||.||||||||..|.||||||||.
RBAM_032310__ 1199 AAATTGAGCATACGCCGGAAATGATTGAGCAGATCATCAGACCGACGGGA 1248
BSNT_05349___ 1249 CTTCTTGACCCGCTTATTGACGTCCGTCCAATCGAAGGTCAGATTGACGA 1298
||.||.||.||.||.||||||||||||||.||||||||.||||||||.||
RBAM_032310__ 1249 CTCCTCGATCCCCTCATTGACGTCCGTCCGATCGAAGGACAGATTGATGA 1298
BSNT_05349___ 1299 CTTGATCGGCGAAATTCAAGCAAGAATCGAGCGAAATGAACGGGTGCTTG 1348
..||||||||||.|||||.||.||.||.||.||.||||||||.||.||.|
RBAM_032310__ 1299 TCTGATCGGCGAGATTCAGGCGAGGATAGAACGGAATGAACGCGTTCTCG 1348
BSNT_05349___ 1349 TGACAACTTTGACGAAGAAGATGTCAGAGGATCTGACCGATTATTTAAAG 1398
||||.|||||.|||||.||.||||||||||||||||||||||||.|.|||
RBAM_032310__ 1349 TGACGACTTTAACGAAAAAAATGTCAGAGGATCTGACCGATTATCTCAAG 1398
BSNT_05349___ 1399 GAAATCGGCATTAAAGTAAACTATCTGCATTCTGAAATCAAGACGCTTGA 1448
||||||||.||.||.||.||.|||||||||||.||.||.|||||||||||
RBAM_032310__ 1399 GAAATCGGTATCAAGGTCAATTATCTGCATTCCGAGATTAAGACGCTTGA 1448
BSNT_05349___ 1449 ACGGATTGAAATTATCCGCGACCTGCGCCTTGGCAAGTACGATGTGCTTG 1498
||||||||||||.|||||.|||||.|||||.||.||..|.||||||.|..
RBAM_032310__ 1449 ACGGATTGAAATCATCCGTGACCTCCGCCTCGGAAAACATGATGTGTTAA 1498
BSNT_05349___ 1499 TCGGCATCAACCTGCTGAGGGAAGGTTTGGACATTCCCGAAGTATCCCTT 1548
|||||||||||||||||||||||||..|.||.|||||.|||||.||.|||
RBAM_032310__ 1499 TCGGCATCAACCTGCTGAGGGAAGGGCTTGATATTCCGGAAGTGTCACTT 1548
BSNT_05349___ 1549 GTTGCGATTTTGGATGCGGATAAGGAAGGTTTCCTTCGTTCGGAGCGGTC 1598
||.||.|||.|.|||||||||||.|||||.|||||.|||||.||.||.||
RBAM_032310__ 1549 GTCGCCATTCTTGATGCGGATAAAGAAGGCTTCCTCCGTTCTGAACGTTC 1598
BSNT_05349___ 1599 GCTGATCCAGACCATCGGACGGGCAGCGAGAAATGCGGAAGGCCGCGTCA 1648
||||||.|||||.|||||||||||.|||.||||.||||||||||||||||
RBAM_032310__ 1599 GCTGATTCAGACGATCGGACGGGCGGCGCGAAACGCGGAAGGCCGCGTCA 1648
BSNT_05349___ 1649 TTATGTACGCCGATAAAATAACGAAGTCTATGGAAATTGCGATTAATGAA 1698
|.|||||.|||||||||||.|||||.||.||||||||.||||||||||||
RBAM_032310__ 1649 TCATGTATGCCGATAAAATCACGAATTCGATGGAAATCGCGATTAATGAA 1698
BSNT_05349___ 1699 ACAAAACGCCGCCGCGAGCAGCAGGAGCGGTTTAATGAAGAGCACGGCAT 1748
||.||.||||||||.||.|||||||||||.|||||.|||...||||||||
RBAM_032310__ 1699 ACGAAGCGCCGCCGGGAACAGCAGGAGCGCTTTAACGAAATTCACGGCAT 1748
BSNT_05349___ 1749 TACGCCGAAAACGATAAATAAAGAAATTCGCGATGTCATTCGTGC--CAC 1796
|||||||.|||||||.|||||.|||||.||||||||.||.||.|| |.|
RBAM_032310__ 1749 TACGCCGCAAACGATCAATAAGGAAATCCGCGATGTGATCCGCGCGACGC 1798
BSNT_05349___ 1797 AGTAGCAGCTGAGGATAAAGCGGAATACAAAACAAAAGCCGCGCCGAAGC 1846
|| ||.|||||||||||||..|||||.|||||||||||||||||.||.|
RBAM_032310__ 1799 AG--GCCGCTGAGGATAAAGAAGAATATAAAACAAAAGCCGCGCCTAAAC 1846
BSNT_05349___ 1847 TGTCGAAAATGACGAAGAAAGAACGCCAGAAAGTCGTTGAACAGATGGAG 1896
||.||||.||||||||||||||||||||||||||||||||.||.||||||
RBAM_032310__ 1847 TGGCGAAGATGACGAAGAAAGAACGCCAGAAAGTCGTTGAGCAAATGGAG 1896
BSNT_05349___ 1897 CATGAAATGAAGGAAGCCGCCAAGGCGCTTGACTTTGAGAGAGCCGCGGA 1946
||.||||||||.|||||.||||..||||||||.||.|||.|.||.||.||
RBAM_032310__ 1897 CACGAAATGAAAGAAGCGGCCAGAGCGCTTGATTTCGAGCGGGCGGCAGA 1946
BSNT_05349___ 1947 GCTTCGCGATTTACTTTTAGAGCTAAAAGCGGAAGGATGA 1986
||||||.||||||||.||||||||.|||||||||||||||
RBAM_032310__ 1947 GCTTCGTGATTTACTGTTAGAGCTTAAAGCGGAAGGATGA 1986
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