Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05329 and RBAM_032200
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:46
# Commandline: needle
# -asequence dna-align/BSNT_05329___nagA.1.9828.seq
# -bsequence dna-align/RBAM_032200___nagA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05329___nagA-RBAM_032200___nagA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05329___nagA-RBAM_032200___nagA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05329___nagA
# 2: RBAM_032200___nagA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1259
# Identity: 850/1259 (67.5%)
# Similarity: 850/1259 (67.5%)
# Gaps: 136/1259 (10.8%)
# Score: 2719.5
#
#
#=======================================
BSNT_05329___ 1 ATGGCAGAGAGTCTTCTTATTAA--AGACATTGCG---ATCGTGACAGAA 45
.||||.||.|| |||.|||| || |..|||| |||||.||||||
RBAM_032200__ 1 GTGGCTGAAAG----CTTGTTAATCAG-CGGTGCGGACATCGTAACAGAA 45
BSNT_05329___ 46 AATGAAGTAATCAAAAACGGCTATGTCGGAATCAATGACGGAAAAATCAG 95
.|.|||.|.|||..||||||.|.|.||||.||.||.||||| ||.
RBAM_032200__ 46 GAAGAAATCATCCGAAACGGTTTTCTCGGTATAAAGGACGG------CAT 89
BSNT_05329___ 96 CACAGTCTC------------AAC-AGAACGGCCCAAGGAGTCATATTCA 132
|| |.|| ||| |||.|| ||| ||..|.|| |.|
RBAM_032200__ 90 CA---TTTCTTACGCGGGGAAAACAAGACCG---CAA-GAAACGTA-TGA 131
BSNT_05329___ 133 AAAGAGATTCAA-GCACCTGCGGATTCCGT-TTTGCTTCCCGGCATGATT 180
.|||..||..|| ||.||.||||..| ||| |..|||||||||.||||||
RBAM_032200__ 132 GAAGGAATGGAAGGCGCCCGCGGGCT-CGTATGCGCTTCCCGGAATGATT 180
BSNT_05329___ 181 GACATTCATATCCACGGCGGCTATGGCGCAGATACAATGGATGCTAGCTT 230
||.||||||||.||||||||.||.|||||.|||||.||||||||| |.|.
RBAM_032200__ 181 GATATTCATATTCACGGCGGATACGGCGCGGATACGATGGATGCT-GATG 229
BSNT_05329___ 231 TTCCACGCTC--GACATCATGTCGTCAAGACTGCCCGAAGAAGGCACGAC 278
||.|| |||| ||.|..|||||..|..|.||||||||||||||.||.||
RBAM_032200__ 230 TTGCA-GCTCTTGATACAATGTCCGCCCGGCTGCCCGAAGAAGGAACAAC 278
BSNT_05329___ 279 GAGCTTTT-TAGCCACAACGATTACCCAAGAGCATGGGAACATTTCTCAA 327
..||||| ||||.||||||||.||.||..||||.|..||||||....||
RBAM_032200__ 279 -CTCTTTTCTAGCGACAACGATCACACAGCAGCACGAAAACATTGAAAAA 327
BSNT_05329___ 328 GCTTTGGTGAACGCAAGAGAGTGGAAAGCGGCT--------GAAGAGTCC 369
||..|.||.|||||.|.|.|.||| |||.|| |.|| ||||
RBAM_032200__ 328 GCGCTCGTCAACGCCAAAAAATGG---GCGTCTTCCTCACCGCAG-GTCC 373
BSNT_05329___ 370 TCTTTATTAGGTGCAGAACTGCTCGGCATTCATTTAGAGGGCCCCTTTGT 419
.|..|||.||.||..||.||||||||||||||||.||.||.|||||
RBAM_032200__ 374 ----AAAAAGGCGCTGAGTTGATCGGCATTCATTTAGAAGGACCGTTTGT 419
BSNT_05329___ 420 TTCGCCTAAAAGAGCCGGAGCGCAGCCAAAGGAGTGGATTAGGCCTTCGG 469
.||.||.||||..||.|||||.|||||.||..|.|||||||..|||.|.|
RBAM_032200__ 420 CTCTCCGAAAAAGGCGGGAGCACAGCCGAAACAATGGATTACTCCTGCTG 469
BSNT_05329___ 470 ATGTTGCGCT-TTTCAAAAAGTGGCAGCAGGAGG----CGGGCGGACTGA 514
|||..|.||| |||||.||| |||.||| || ||||.||.||||
RBAM_032200__ 470 ATGCCGGGCTCTTTCAGAAA-TGGGAGC----GGCTCTCGGGAGGGCTGA 514
BSNT_05329___ 515 TCAAAATTGTTACACTTGCGCCGGAGGAGGATCAGCATTTTGAACTGATC 564
|||||||.||.||.|||||||||||.||.||||...||||....||||||
RBAM_032200__ 515 TCAAAATCGTGACGCTTGCGCCGGAAGAAGATCCTGATTTCAGCCTGATC 564
BSNT_05329___ 565 CGCCATTTGAAAGACGAATCGATTATCGCGTCCATGGGGCACAC------ 608
||..||||.||||||.||...||.|||.||||.|||||.|||||
RBAM_032200__ 565 CGTTATTTAAAAGACCAAAACATCATCCCGTCAATGGGACACACAGACGC 614
BSNT_05329___ 609 -GGATGCCGATTCCGCATT--------GCTGTCGGATGCCGCAAAAGCAG 649
||| ||||| ||.|| || |.|||||||| |
RBAM_032200__ 615 GGGA-GCCGA----GCTTTTACAAAAAGC-GGCGGATGCC---------G 649
BSNT_05329___ 650 GGGCGAGCCATATGACTCATCTGTACAACGCGATGAGCCCGTTTCATCAC 699
|||||...||||||||.||.||.|.||||||.||||||.|.||||||||.
RBAM_032200__ 650 GGGCGGTGCATATGACGCACCTCTTCAACGCCATGAGCTCCTTTCATCAT 699
BSNT_05329___ 700 CGAGAGCCCGGAGTGATCGGAACGGCGCTGGCC--------CATGATGGG 741
||..||||.||.|..|||||.|||||.||.||| |||.|.||
RBAM_032200__ 700 CGTAAGCCGGGGGGCATCGGTACGGCTCTCGCCTGCGGCCGCATCACGG- 748
BSNT_05329___ 742 TTTGTGACAGAGCTTATTGCCGATGGCATTCACTCCCATCCTTTAGCTGC 791
|.|||||.||..|.||.||||||||.|||||||||||.||.|.
RBAM_032200__ 749 -------CGGAGCTGATCACTGACGGCATTCATTCCCATCCTTTGGCCGT 791
BSNT_05329___ 792 AAAGCTTGCTTTTTTGGCGAAAGGCAGCAGCAAGCTCATTTTAATTACCG 841
.||||||||.|.||||||||||||.||||..||.||.||..|.||.||.|
RBAM_032200__ 792 TAAGCTTGCCTATTTGGCGAAAGGAAGCAAAAACCTGATCATGATCACAG 841
BSNT_05329___ 842 ATTCCATGAGGGCAAAAGGCCTGAAAGACGGCGTATATGAGTTTGGCGGC 891
|.||||||.||||||||||.||.||.|||||.|.|||.||.||.|||||.
RBAM_032200__ 842 ACTCCATGCGGGCAAAAGGGCTTAAGGACGGAGAATACGAATTCGGCGGA 891
BSNT_05329___ 892 CAAAGTGTGACGGT--AAGAGGACGAACAGCACTTCTTTCAGACGGAACC 939
||||..||.||.|| ..|.|||| ||.||.|||||.||.|||||.||.
RBAM_032200__ 892 CAAAAAGTCACCGTTCGCGGGGAC--ACGGCGCTTCTCTCTGACGGGACG 939
BSNT_05329___ 940 CTTGCCGGTTCGATCCTCAAAATGAACGAAGGCGCACGGCATATGCGTGA 989
||.||||||||.||..|.||||||||.||||||||...||..|||||...
RBAM_032200__ 940 CTGGCCGGTTCCATTTTAAAAATGAATGAAGGCGCGGCGCTCATGCGCAG 989
BSNT_05329___ 990 GTTTACAAATTGCTCTTGGACGGATATAGCTAATATAACTTCTGCAAACG 1039
|||||||||.|||||.|||..|||||||||.|||||.||.||.|||||.|
RBAM_032200__ 990 GTTTACAAACTGCTCATGGCTGGATATAGCAAATATGACATCGGCAAATG 1039
BSNT_05329___ 1040 CGGCCAAACAGCTGGGCATCTTTGACCGAAAAGGCAGTGTGACTGTGGGA 1089
|||||...|..||.|||||.||.|||||.|||||.||..|..|.|..|||
RBAM_032200__ 1040 CGGCCCGCCGCCTCGGCATATTCGACCGTAAAGGAAGCATCGCCGAAGGA 1089
BSNT_05329___ 1090 AAAGATGCAGATTTGGT-------GATTGTCAGCAGTGATTGCGAGGTGA 1132
|||||.||.||..|.|| ||..|.||| ||||..|||.
RBAM_032200__ 1090 AAAGACGCCGACGTTGTTCTGACGGACGGACAG-------TGCGGCGTGC 1132
BSNT_05329___ 1133 TTCTCACCATTTGCCGCGGAAACATTGCATTTATATCCAAGGAGGCTGAC 1182
|...|||.||||||||||||||||..||||.|||.||.|.|||||||||.
RBAM_032200__ 1133 TGGCCACGATTTGCCGCGGAAACACCGCATATATCTCAAGGGAGGCTGAT 1182
BSNT_05329___ 1183 CAGATATGA 1191
..||.||||
RBAM_032200__ 1183 TGGACATGA 1191
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