Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05324 and RBAM_032170
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:45
# Commandline: needle
# -asequence dna-align/BSNT_05324___ppaX.1.9828.seq
# -bsequence dna-align/RBAM_032170___hprP.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05324___ppaX-RBAM_032170___hprP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05324___ppaX-RBAM_032170___hprP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05324___ppaX
# 2: RBAM_032170___hprP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 671
# Identity: 493/671 (73.5%)
# Similarity: 493/671 (73.5%)
# Gaps: 40/671 ( 6.0%)
# Score: 1779.0
#
#
#=======================================
BSNT_05324___ 1 ATGAGTGACAAACAAGTAACGACGATTCTGTTTGATTTAGACGGAACGCT 50
||||.|||.||||..|||||..|.|||.|.||||||.|.|||||.|||||
RBAM_032170__ 1 ATGACTGATAAACGTGTAACCGCCATTTTATTTGATCTCGACGGCACGCT 50
BSNT_05324___ 51 TATTAATACGAATGAATTAATTATCGCGTCCTTTTTGCATACACTGGAGC 100
.|||.|.|||||||||.|.||||||||.||.|.|.|.|||||.||.||.|
RBAM_032170__ 51 GATTGACACGAATGAACTGATTATCGCTTCTTATCTTCATACGCTTGATC 100
BSNT_05324___ 101 ATTATTATCCGAGCAAGTATAAACGAGAAGATGTCCTTGCGTTTATCGGG 150
||||||..|||.|..|||..|||.|.||||||||.|||.||||||||||.
RBAM_032170__ 101 ATTATTGCCCGGGGCAGTTCAAAAGGGAAGATGTGCTTCCGTTTATCGGC 150
BSNT_05324___ 151 CCGTCTCTTTTTGAAACGTTCTC-----TTCGATGGACCCTGATAAATGC 195
|||.||||.|.|||||||||.|| || .||| ||||.||.|||
RBAM_032170__ 151 CCGCCTCTGTATGAAACGTTTTCAGGCATT-AATG----CTGAAAAGTGC 195
BSNT_05324___ 196 GAGGATATGATC-GCTATGTACAGAGCGTACAATCATGACATGCATGATT 244
||.||.|||||| || |||||||||||.|.|||.|||||.|.|||.|||.
RBAM_032170__ 196 GATGAGATGATCAGC-ATGTACAGAGCATTCAACCATGAAAAGCACGATG 244
BSNT_05324___ 245 CACTCGTGACTGAATATGAAACGGTATATGAGACCCTGGATGCATTAAAA 294
..|||||.||.||.||.||||||||.|||||.||.|||||||.|||.|||
RBAM_032170__ 245 AGCTCGTCACGGAGTACGAAACGGTTTATGAAACGCTGGATGAATTGAAA 294
BSNT_05324___ 295 AAAGCCGGCTTTACA-TTAGGAATTGTGACAACAAAATTAAGAGATACTG 343
|||||.||.|.| || .|.||.|||||.||.|||||..|.||.|||||.|
RBAM_032170__ 295 AAAGCGGGATAT-CAGCTCGGGATTGTCACCACAAAGCTGAGGGATACAG 343
BSNT_05324___ 344 TCAATATGGGCCTCAAGCTCACGGGAATCGGCGAATTCTTTGAAACAGTT 393
||||||||||..|.|||||.||.||.|||||.|..||.||.||.||.||.
RBAM_032170__ 344 TCAATATGGGATTGAAGCTGACAGGCATCGGGGCGTTTTTCGATACTGTC 393
BSNT_05324___ 394 GTCACCCTTGATGATGTGACAAATGCA----AAGCCTGATCCCGAGCCTG 439
|||||.||||||||||| ||.||| ||||||||.||||||||||
RBAM_032170__ 394 GTCACGCTTGATGATGT----AAAGCATCCGAAGCCTGACCCCGAGCCTG 439
BSNT_05324___ 440 TGCTGTTAGCGCTGAAACAGTTAGGAAGCAAGCCCGAGGAAGCCATTATG 489
|||.|.|.||.||.|..|.|.|.||..||.|.||...|||||||||.|||
RBAM_032170__ 440 TGCGGCTTGCTCTCAGCCGGCTTGGGTGCGATCCGTCGGAAGCCATAATG 489
BSNT_05324___ 490 GTCGGAGATAATTACCACGATGTGCTGGCAGGCAAAAACGCCGGTACAAA 539
|||||.||.|||||.||||||||..||||.||.|||||||||||.||.||
RBAM_032170__ 490 GTCGGTGACAATTATCACGATGTCATGGCGGGAAAAAACGCCGGCACGAA 539
BSNT_05324___ 540 AACGGCAGGAGTCGCATGGACGATTAAAGGGCCGGAAATGCTGGCGAAGC 589
|||.||.||.|||||.|||||||||||||| ||.|.| ||.||
RBAM_032170__ 540 AACAGCCGGCGTCGCGTGGACGATTAAAGG--CGCACA-------GACGC 580
BSNT_05324___ 590 ---------ATGAGCCGGATTTTATGCTTGAGAAAATGAGTGATCTATTA 630
||||.||.||||.||||||.|||||||||||||||.||||.
RBAM_032170__ 581 TTTCCGCCTATGAACCCGATTATATGCTCGAGAAAATGAGTGATTTATTG 630
BSNT_05324___ 631 CAAATCGTTGGAGTGAAGTAA 651
||.|||...||||||||||||
RBAM_032170__ 631 CACATCACCGGAGTGAAGTAA 651
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