Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05314 and RBAM_032140
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:45
# Commandline: needle
# -asequence dna-align/BSNT_05314___hisZ.1.9828.seq
# -bsequence dna-align/RBAM_032140___hisZ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05314___hisZ-RBAM_032140___hisZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05314___hisZ-RBAM_032140___hisZ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05314___hisZ
# 2: RBAM_032140___hisZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1193
# Identity: 928/1193 (77.8%)
# Similarity: 928/1193 (77.8%)
# Gaps: 37/1193 ( 3.1%)
# Score: 3557.5
#
#
#=======================================
BSNT_05314___ 1 ATGTTTATGTTTGAAAAACCGCACGGCATGAGAGATACACTGCCCGGTTT 50
||||||||||||||.||||||||.||||||||||||||.|||||||||||
RBAM_032140__ 1 ATGTTTATGTTTGAGAAACCGCATGGCATGAGAGATACGCTGCCCGGTTT 50
BSNT_05314___ 51 ATACGAAACGAAAAAAAAGGTGAGACGATCGT-------TAACCGATTTG 93
|||||||.|.||.|||||.|| .||| |.||.|||||.
RBAM_032140__ 51 ATACGAAGCCAAGAAAAAAGT-------CCGTTCCACACTGACGGATTTA 93
BSNT_05314___ 94 ATTGATAAATGGGGATATCAATTTATGGAAACGCCGACACTGGAGTTTTA 143
||||||||||||||.|||||.||||||||.||||||||.||.||.|||||
RBAM_032140__ 94 ATTGATAAATGGGGTTATCAGTTTATGGAGACGCCGACCCTTGAATTTTA 143
BSNT_05314___ 144 CGATACCGTTGGCGTCCAGTCAGCAATTGAAGAGCAGCAGCTGTTTAAGC 193
.||.||.||.||||||||||||||.||||||||.||||||||||||||||
RBAM_032140__ 144 TGAAACAGTAGGCGTCCAGTCAGCCATTGAAGAACAGCAGCTGTTTAAGC 193
BSNT_05314___ 194 TACTTGATCAGGACGGCAAGACATTGGTGCTTCGCCCGGATATGACGGGG 243
|.||.|||||||||||.||.||..|.||||||||.||.||||||||.||.
RBAM_032140__ 194 TTCTCGATCAGGACGGGAAAACGCTTGTGCTTCGGCCTGATATGACCGGA 243
BSNT_05314___ 244 CCGATTGCAAGGGTAGCGGCATCGAAGCTTCTGAAACACGGTCATCCGCT 293
||||||||.|||||.|||||.||.|||||.|..||||||..|||||||||
RBAM_032140__ 244 CCGATTGCCAGGGTGGCGGCGTCTAAGCTGCACAAACACAATCATCCGCT 293
BSNT_05314___ 294 AAGAGTCGGCTATGCGGCAAATGTAT-TCAGGGCTCAGGAGCGTGAAGGC 342
.||||..||.||.|||||||..||.| || |.|||||||||||.||||||
RBAM_032140__ 294 CAGAGCGGGGTACGCGGCAAGCGTCTATC-GCGCTCAGGAGCGGGAAGGC 342
BSNT_05314___ 343 GGACGTCCGGCTGAGTTCGAGCAGGTCGGAGTGGAGTTAATCGGTGACGG 392
|||||||||||.||.|||||.||||||||.|.||||.|.|||||.|||||
RBAM_032140__ 343 GGACGTCCGGCAGAATTCGAACAGGTCGGTGCGGAGCTGATCGGCGACGG 392
BSNT_05314___ 393 CACGACGAGCGCGGATGCGGAGGTCATTGCTTTAGTCGTCGGGGCATTAA 442
..|.||.||||||||.||.|||||.|||||..|.|..|.|||.||.||.|
RBAM_032140__ 393 ATCAACAAGCGCGGACGCCGAGGTGATTGCGCTGGCGGCCGGCGCTTTGA 442
BSNT_05314___ 443 AAAACGCTGGGCTGGCATCC--TTTAAAATTGCCATCGGCCATGCCGGCA 490
||||||| |||.|.||| || ||||||||.||.||||||||||||||..
RBAM_032140__ 443 AAAACGC-GGGATTGCA-CCGGTTTAAAATCGCGATCGGCCATGCCGGAC 490
BSNT_05314___ 491 TTGCGGATGCTTTGTTTGTTGAGGTGCTCGGAAACGTTGAACGAGCTGAT 540
|.||.||||...|||||||.|||||.||.||.||.|.|||.||.||.|||
RBAM_032140__ 491 TCGCTGATGAGCTGTTTGTCGAGGTTCTGGGCAATGCTGAGCGGGCGGAT 540
BSNT_05314___ 541 GTGCTGCGGAGGTTCTTATATGAAAAGAACTACGTCGGCTACAGAGAGCA 590
||.||||||.|.||..|.|.|||.|||||.|||||.||.|||||.||.||
RBAM_032140__ 541 GTTCTGCGGCGCTTTCTCTTTGAGAAGAATTACGTGGGATACAGGGAACA 590
BSNT_05314___ 591 TGTCAAGTCTCTCCCGCTTTCCTCCATTGATAAAAGCAGGCTGCTTGAGC 640
||||||.||.||.||||||||.||.||.||.||||||.|||||||.|..|
RBAM_032140__ 591 TGTCAAATCGCTTCCGCTTTCTTCAATAGACAAAAGCCGGCTGCTGGCAC 640
BSNT_05314___ 641 TCCTTGAACTGCGGGGCGGTATAGAAGTATGCGGACGTGCCGAAGAAATC 690
|.||.|||.||||.|||||.|.|||..|.||||.....||.||.||.|||
RBAM_032140__ 641 TTCTGGAATTGCGAGGCGGGAAAGAGATCTGCGCCAAAGCGGAGGAGATC 690
BSNT_05314___ 691 GTCG--ATTCTGCGCAAGGAAAAAGCGTGGTTGATGAGCT-GAAGGCGCT 737
.||| | |||.| |||.|||||.||.||.|.||||| ||||.| ||
RBAM_032140__ 691 ATCGGCA-TCTCC----GGACAAAGCTTGATTCAGGAGCTGGAAGAC-CT 734
BSNT_05314___ 738 GTGGGACATTCTTGAGGATTACGGATGTACGGAAAATGTCCGCCTGGATC 787
||||||||||||||||||||||||||||.|.||..||.|.|||||.||||
RBAM_032140__ 735 GTGGGACATTCTTGAGGATTACGGATGTGCCGAGCATATTCGCCTTGATC 784
BSNT_05314___ 788 TGAATATGGTCAGCCACATGAGCTATTACACAGGGATTTTATTTGAAGTG 837
||||||||||.|||||.|||||.||||||||.||.||||||||.||||||
RBAM_032140__ 785 TGAATATGGTAAGCCATATGAGTTATTACACGGGAATTTTATTCGAAGTG 834
BSNT_05314___ 838 TACGCCGAGAATGTCGGTTTTGTCATTGGAAGCGGCGGCCGTTACAACAA 887
||.||.|..|||||||||||||||||.|||||||||||.||.||.|||||
RBAM_032140__ 835 TATGCGGCAAATGTCGGTTTTGTCATCGGAAGCGGCGGACGCTATAACAA 884
BSNT_05314___ 888 GCTGCTGGGCCATTTTGATTCA--CCTGCACCGGCAACAGGCTTCGGGCT 935
.||.||.||||||||.| .|| ||.||.||.||.||.||.||||||||
RBAM_032140__ 885 TCTTCTCGGCCATTTCG--GCAGTCCCGCTCCCGCCACGGGTTTCGGGCT 932
BSNT_05314___ 936 TCGGATCGACCGGCTGATTGAAGCCCTTCATATGAAAGAAGAACCATGTG 985
.||.||||||.|||||||||||||.||....||..|.||||||.|..|||
RBAM_032140__ 933 CCGTATCGACAGGCTGATTGAAGCGCTCGGCATCCAGGAAGAAACTAGTG 982
BSNT_05314___ 986 ATATAGACGCTGTTATTTTCAGCAAAGAGCAGCGGGCGCAAGCTATCGCT 1035
|....|||||.||.|||||||||||.||||||||||||||.||.|| .|
RBAM_032140__ 983 AAGCGGACGCCGTGATTTTCAGCAAGGAGCAGCGGGCGCAGGCCAT--TT 1030
BSNT_05314___ 1036 TAT--GCGAATGAAGAACGCATGAAAGGGAACAAAGTAGTTCTTCAAGAT 1083
||| |||.|.||||||.|...||.|||.|..|||||.||.||.||.|||
RBAM_032140__ 1031 TATTCGCGGAGGAAGAAAGGGCGAGAGGCAGAAAAGTCGTCCTGCAGGAT 1080
BSNT_05314___ 1084 TTATCGGGAATAGAAAATATCGACCAGATGACAAAATCTTTTGCAAACGT 1133
.|..||||.||.|||||||||||.||.|||||||||||.||.||||||||
RBAM_032140__ 1081 CTGGCGGGCATTGAAAATATCGATCATATGACAAAATCATTCGCAAACGT 1130
BSNT_05314___ 1134 CACTTATTTTATCGGTGCCAGAAAGGAAGAGCAAAATGGGTAA 1176
|||.||.||||||||||||||||||||||||||.|||||||||
RBAM_032140__ 1131 CACATACTTTATCGGTGCCAGAAAGGAAGAGCAGAATGGGTAA 1173
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