Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05309 and RBAM_032110

See Amino acid alignment / Visit BSNT_05309 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:45
# Commandline: needle
#    -asequence dna-align/BSNT_05309___hisB.1.9828.seq
#    -bsequence dna-align/RBAM_032110___hisB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05309___hisB-RBAM_032110___hisB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05309___hisB-RBAM_032110___hisB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05309___hisB
# 2: RBAM_032110___hisB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 587
# Identity:     473/587 (80.6%)
# Similarity:   473/587 (80.6%)
# Gaps:           4/587 ( 0.7%)
# Score: 1894.5
# 
#
#=======================================

BSNT_05309___      1 ATGAGAAAAGCGGAACGCGTCAGGAAAACAAACGAAACAGATATTGAGCT     50
                     |||||||||||||||||||.|||.|.||||||.||.||.||||||.||||
RBAM_032110__      1 ATGAGAAAAGCGGAACGCGCCAGAACAACAAATGAGACCGATATTAAGCT     50

BSNT_05309___     51 GGCATTTACAATAGACGGCGGGGGACAAGCGGATATCAAAACAGATGTGC    100
                     |||.||...|||||||||.|..|||.||||.||.||||..||.|||||||
RBAM_032110__     51 GGCTTTCGAAATAGACGGAGAAGGAAAAGCCGACATCAGCACGGATGTGC    100

BSNT_05309___    101 CGTTTATGACACATATGTTGGATTTATTCACGAAACACGGCCAATTCGAT    150
                     ||||||||||.||||||.|.|||||.|||||.||.|||||.||||||.||
RBAM_032110__    101 CGTTTATGACTCATATGCTTGATTTGTTCACAAAGCACGGGCAATTCAAT    150

BSNT_05309___    151 CTTTCCATTAACGCAAAAGGCGATGTTGATATAGATGATCACCACACGAC    200
                     .|..|..||.||||||||||||||...||.||||||||||||||||||||
RBAM_032110__    151 TTAACTGTTGACGCAAAAGGCGATACGGAGATAGATGATCACCACACGAC    200

BSNT_05309___    201 TGAAGATATCGGCATCTGCTTAGGGCAGGCGCTGCTCGAAGCGTTGGGCG    250
                     ||||||.|||||||||||||||||||||||..|..|.||.|||.|.||.|
RBAM_032110__    201 TGAAGACATCGGCATCTGCTTAGGGCAGGCTTTTTTGGAGGCGCTCGGTG    250

BSNT_05309___    251 ATAAAAAAGGAATCAAACGCTACGGATCGGCGTTTGTGCCGATGGATGAG    300
                     ||||||||||.||||||||.||||||||.|||.|.||.||||||||.||.
RBAM_032110__    251 ATAAAAAAGGCATCAAACGGTACGGATCAGCGCTGGTACCGATGGACGAA    300

BSNT_05309___    301 GCACTTGCTCAAGTTGTGATTGATTTAAGCAACCGGCCGCACTTAGAAAT    350
                     ||.||.||.|||||.|...|.||..|.|||||||||||||||.|.||.||
RBAM_032110__    301 GCGCTCGCCCAAGTCGCCGTAGACCTGAGCAACCGGCCGCACCTTGAGAT    350

BSNT_05309___    351 GCGCGTTG-ATTTCCCGGC-TGCTAAAGTCGGAACTTTCGATACGGAGCT    398
                     |||||.|| ||||||  || .||.|||||||||||.||.|||||.|||||
RBAM_032110__    351 GCGCGCTGCATTTCC--GCAAGCGAAAGTCGGAACGTTTGATACCGAGCT    398

BSNT_05309___    399 TGTACATGAATTTTTGTGGAAGCTTGCGCTCGAAGCCCGGATGAACCTGC    448
                     .|||||||||||..|.|||||.||.|||||||||||..|.|||||.||||
RBAM_032110__    399 GGTACATGAATTCCTATGGAAACTGGCGCTCGAAGCGAGAATGAATCTGC    448

BSNT_05309___    449 ACGTCATCGTTCATTATGGCACAAATACCCACCACATGATTGAAGCCGTT    498
                     ||||||||||||||||.|||||.|||||.||.||.|||||.||||||||.
RBAM_032110__    449 ACGTCATCGTTCATTACGGCACGAATACGCATCATATGATAGAAGCCGTG    498

BSNT_05309___    499 TTTAAAGCGCTGGGACGTGCGCTTGATGAAGCGACAACGATCGATCCGCG    548
                     |||||.|||||.||..|.|||||||||||||||.||.|.||.||||||||
RBAM_032110__    499 TTTAAGGCGCTTGGCAGAGCGCTTGATGAAGCGTCATCCATTGATCCGCG    548

BSNT_05309___    549 AGTTAAAGGAATACCGTCAACGAAAGGGATGCTGTAA    585
                     .||.||.||..|.|||||.||||||||.|||||||||
RBAM_032110__    549 CGTCAAGGGTGTGCCGTCTACGAAAGGAATGCTGTAA    585


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