Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05306 and RBAM_032080

See Amino acid alignment / Visit BSNT_05306 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:44
# Commandline: needle
#    -asequence dna-align/BSNT_05306___hisF.1.9828.seq
#    -bsequence dna-align/RBAM_032080___hisF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05306___hisF-RBAM_032080___hisF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05306___hisF-RBAM_032080___hisF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05306___hisF
# 2: RBAM_032080___hisF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 768
# Identity:     603/768 (78.5%)
# Similarity:   603/768 (78.5%)
# Gaps:          18/768 ( 2.3%)
# Score: 2361.0
# 
#
#=======================================

BSNT_05306___      1 ATGATCACAAAACGGATTATTCCATGCCTTGATGTCAAAGAAGGACGCGT     50
                     ||||||||.|||||.||.|||||.||.||.|||||.||||||||||||||
RBAM_032080__      1 ATGATCACGAAACGAATCATTCCGTGTCTCGATGTGAAAGAAGGACGCGT     50

BSNT_05306___     51 TGTCAAAGGAATTCAATTTCTCGAATTGAAGGATGCAGGTGACCCAGTTG    100
                     .||||||||.|||||||||||||...||||.|||||.||.||.||.||.|
RBAM_032080__     51 CGTCAAAGGCATTCAATTTCTCGGGCTGAAAGATGCGGGCGATCCTGTCG    100

BSNT_05306___    101 AACTCGCTGAAGTGTACGACCGGGAAGGTGCGGATGAACTTGTTTTTCTT    150
                     |.||.||.||||..||||||.||||..|.||.||.||||||||||||||.
RBAM_032080__    101 AGCTGGCCGAAGCTTACGACAGGGAGAGCGCTGACGAACTTGTTTTTCTC    150

BSNT_05306___    151 GATATCTCCGCCTCACATGAAGGACGAAAGACGATGATTGACGTTGTGGA    200
                     ||.||.||||||||.||.|||||.||.||||||||||..|||||.||.||
RBAM_032080__    151 GACATTTCCGCCTCTCACGAAGGCCGCAAGACGATGACGGACGTCGTAGA    200

BSNT_05306___    201 GCAGGTTGCCGCGAAGCTTGCGATTCCGTTTACAGTCGGCGGCGGCATCA    250
                     .||||||||.||.||.||.||||||||||||||.|||||||||||.||.|
RBAM_032080__    201 ACAGGTTGCGGCAAAACTGGCGATTCCGTTTACGGTCGGCGGCGGAATTA    250

BSNT_05306___    251 ATCAGCTCAGCGATATGAAAACG-ATACTGCGTGCCGGAGCGGACAAAGT    299
                     ||||..|.||||||||| ||||| ||.||.||.|||||.||.||.|||||
RBAM_032080__    251 ATCAATTAAGCGATATG-AAACGAATGCTTCGCGCCGGCGCTGATAAAGT    299

BSNT_05306___    300 GTCGGTGAACACGGCAGCTGTTCTTCGCCCCGAGCTGATTACAGAAGGAG    349
                     .||.||.||.||.||.||.|||||.|||||||||||||||||.|||||||
RBAM_032080__    300 ATCCGTTAATACAGCGGCCGTTCTCCGCCCCGAGCTGATTACGGAAGGAG    349

BSNT_05306___    350 CCGAGTTTTTCGGTTCGCAATGCATCGTTCTTGCCATTGATGCCAAGTAT    399
                     |.||.||||||||.||||||||||||||....||.|||||.||.||||||
RBAM_032080__    350 CGGATTTTTTCGGCTCGCAATGCATCGTAGCGGCGATTGACGCAAAGTAT    399

BSNT_05306___    400 GACAAAGAATCTGACACATATAAGGTCTATACGCACGGCGGCAGAAAGAA    449
                     |||.||||.||.||....|||||.||.||.||.||||||||||||.||||
RBAM_032080__    400 GACGAAGATTCGGATTGCTATAAAGTGTACACACACGGCGGCAGACAGAA    449

BSNT_05306___    450 AACAGATTGGGAGGTCACCGCGTGGGCAAAAGAAGGCGTCAAACGCGGGG    499
                     |||.||.|||||.|||||.||.|||||||||||||.|||||..||.||.|
RBAM_032080__    450 AACCGAGTGGGAAGTCACGGCCTGGGCAAAAGAAGCCGTCAGCCGGGGAG    499

BSNT_05306___    500 CGGGAGAAATATTGCTGACAAGCATGGACTCTGACGGTGAGAAAAAAGGC    549
                     ||||.|||||..|||||||||||||||||.|.|||||||||||||.||||
RBAM_032080__    500 CGGGTGAAATCCTGCTGACAAGCATGGACGCAGACGGTGAGAAAACAGGC    549

BSNT_05306___    550 TTCGACCACACGCTGACAAAGCTTGT------TTCCGAAACTGTCCCCGT    593
                     ||..|.||.|||||.|||.|||||||      |.||      |||||.||
RBAM_032080__    550 TTTAATCATACGCTCACACAGCTTGTCACACGTGCC------GTCCCGGT    593

BSNT_05306___    594 CCCTGTTATCGCTTCGGGAGGCGCGGGAAACGCGCAGCATATGCTTGAGG    643
                     .||.||.||.||.||.||.||.||.||||.|||||..|||||||||||.|
RBAM_032080__    594 GCCCGTCATTGCGTCAGGGGGAGCCGGAAGCGCGCGCCATATGCTTGAAG    643

BSNT_05306___    644 CTTTTACAAAAGGAGAAGCCGACGCTGCGCTGGCCGCCTCAATTTTTCAT    693
                     |.||.||.|..||.|||||.|||||.|||||.||.||.||.|||||.|||
RBAM_032080__    644 CCTTCACGATCGGTGAAGCGGACGCCGCGCTTGCAGCTTCCATTTTCCAT    693

BSNT_05306___    694 TATAAAGAAACATCGATTAAAGAAGTGAA--ATCATACTTGAAAGAGTAC    741
                     ||.|||||.|||||.||.|||||||||||  ||.|||  ||||..|..||
RBAM_032080__    694 TACAAAGAGACATCTATAAAAGAAGTGAAAGATTATA--TGAAGAAACAC    741

BSNT_05306___    742 GGGGTGAATGTGAGATGA    759
                     ||||||||||||||||||
RBAM_032080__    742 GGGGTGAATGTGAGATGA    759


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