Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05305 and RBAM_032070

See Amino acid alignment / Visit BSNT_05305 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:44
# Commandline: needle
#    -asequence dna-align/BSNT_05305___hisI.1.9828.seq
#    -bsequence dna-align/RBAM_032070___hisI.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05305___hisI-RBAM_032070___hisI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05305___hisI-RBAM_032070___hisI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05305___hisI
# 2: RBAM_032070___hisI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 637
# Identity:     492/637 (77.2%)
# Similarity:   492/637 (77.2%)
# Gaps:          23/637 ( 3.6%)
# Score: 1865.5
# 
#
#=======================================

BSNT_05305___      1 ATGAAACAGGCAGATGAACTGCGTTTTAACGAGGACGGATTAATTCCTGC     50
                     |||||||.|||||||||||||||.|||.||||||.||||.|.|||||.||
RBAM_032070__      1 ATGAAACGGGCAGATGAACTGCGGTTTGACGAGGCCGGACTGATTCCAGC     50

BSNT_05305___     51 CATCGTGCAGGATGCGGCAAGCAAAGAAGTGCTGACACTTGCCTATATGA    100
                     ||||||||||||||||||||||||||||||.||||||||.||.|||||||
RBAM_032070__     51 CATCGTGCAGGATGCGGCAAGCAAAGAAGTACTGACACTGGCTTATATGA    100

BSNT_05305___    101 ACAAGGAATCATACGAAAAAACGCTGGAAACGAAGGAAACATGGTTTTAC    150
                     |....|||||.||||||||||||.|.||||||||.|||||.|||||||||
RBAM_032070__    101 ATCGTGAATCCTACGAAAAAACGATAGAAACGAAAGAAACCTGGTTTTAC    150

BSNT_05305___    151 AGCCGCTCACGCCAAGCGTTATGGCATAAAGGAGAAACCTCAGGGAACAC    200
                     |||||.||||||...|.|.|.|||||||||||||..||.||.|||||.||
RBAM_032070__    151 AGCCGTTCACGCGGGGAGCTGTGGCATAAAGGAGCGACGTCGGGGAATAC    200

BSNT_05305___    201 GCAAGCGGTCAAAGGTATCCGGTATGACTGCGACGAGGACGC-GTTGCTC    249
                     .|||..|||.||||..|||||.|||||.|||||..|.||.|| .||| ||
RBAM_032070__    201 CCAAAAGGTGAAAGCCATCCGCTATGATTGCGATCAAGATGCTCTTG-TC    249

BSNT_05305___    250 GTACTCGTAGAACCGTCAGGCCCGGCATGCCACACTGGCAGCTACAGCTG    299
                     ||.||.|..||.||.|||||.||.||||||||.|..||.|||||||||||
RBAM_032070__    250 GTGCTTGCGGAGCCCTCAGGACCCGCATGCCATAAGGGAAGCTACAGCTG    299

BSNT_05305___    300 TTTTACGAAGGAACAAACAGAAGAACAGGCCGC-GGGCCGATTCGGCATC    348
                     .|||.|...||||.||.|.||.|       ||| ||..||.|||||||||
RBAM_032070__    300 CTTTTCTCCGGAAAAAGCGGATG-------CGCAGGATCGTTTCGGCATC    342

BSNT_05305___    349 ATGAACGAACTGGAGCGCGTAATCGCGGAACGCCAAGCGGAGATGCCTGA    398
                     .|.||.||||||||..||||||||||..||||.||.||||||||||||||
RBAM_032070__    343 TTAAATGAACTGGAAAGCGTAATCGCCAAACGGCAGGCGGAGATGCCTGA    392

BSNT_05305___    399 AGGAGCTTACACCACTTACCTTTTCCGTGAAGGCGTCGATAAGATTTTGA    448
                     .|||||.|||||.||.||.||.||.||.||||||||||||||.||..|.|
RBAM_032070__    393 GGGAGCCTACACAACGTATCTGTTTCGGGAAGGCGTCGATAAAATCCTCA    442

BSNT_05305___    449 AAAAAGTCGGTGAAGAAGCATCCGAAGTCATCATCGCCGCGAAAAACCGG    498
                     ||||||||||.||||||||..|.||.||.||.||||||||||||||||||
RBAM_032070__    443 AAAAAGTCGGCGAAGAAGCCGCAGAGGTTATTATCGCCGCGAAAAACCGG    492

BSNT_05305___    499 GACCACGAGGAACTCAAATGGGAAGCGGCAGACCTGCTGTATCACCTGCT    548
                     |||||.||.|||.|.||||||||||||||.||..||||||||||..||||
RBAM_032070__    493 GACCATGAAGAATTAAAATGGGAAGCGGCGGATTTGCTGTATCATTTGCT    542

BSNT_05305___    549 TGTCCTGCTCAGAGAACAAGC-CTTGCCGCTGGATGATGTGCTTGACGT-    596
                     .||.||.||..|.||.||..| ||| ||..||||.||.||||||||||| 
RBAM_032070__    543 CGTTCTTCTGCGTGAGCAGTCGCTT-CCTTTGGACGACGTGCTTGACGTC    591

BSNT_05305___    597 ATTGAAAAAACGCCATTCTGAGAAAGAA---GAGTAA    630
                     .||| ..|||||||||||      ||.|   ||||||
RBAM_032070__    592 CTTG-CGAAACGCCATTC------AGCATCTGAGTAA    621


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