Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05297 and RBAM_032020
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:44
# Commandline: needle
# -asequence dna-align/BSNT_05297___yvcE.1.9828.seq
# -bsequence dna-align/RBAM_032020___cwlO.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05297___yvcE-RBAM_032020___cwlO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05297___yvcE-RBAM_032020___cwlO.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05297___yvcE
# 2: RBAM_032020___cwlO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1453
# Identity: 1138/1453 (78.3%)
# Similarity: 1138/1453 (78.3%)
# Gaps: 83/1453 ( 5.7%)
# Score: 4483.0
#
#
#=======================================
BSNT_05297___ 1 GTGAGAAAGAGTTTAATTACACTTGGTTTGGCTTCCGTCATCGGGACAAG 50
||||.||||||||||.|.||||||||||||||||||||||||||||||||
RBAM_032020__ 1 GTGAAAAAGAGTTTATTAACACTTGGTTTGGCTTCCGTCATCGGGACAAG 50
BSNT_05297___ 51 CAGTTTTTTGATCCCATTTACAAGTAAAACTGCATCGGCGGAAACATTAG 100
|||||||||||||||.|||||| |||||||||||||||||||||||||
RBAM_032020__ 51 CAGTTTTTTGATCCCGTTTACA---AAAACTGCATCGGCGGAAACATTAG 97
BSNT_05297___ 101 A-TGAAAAGAAACAAAAAATCGAAAGCAAGCAATCTGAGGTTGCTTCCAG 149
| .|.||| |||...||||||||||||||||||||||||||.|||||.||
RBAM_032020__ 98 ACAGCAAA-AAAGCGAAAATCGAAAGCAAGCAATCTGAGGTGGCTTCAAG 146
BSNT_05297___ 150 CATTGAAGCGAAGGAAAAAGAATTAACCGAGCTTCAGGAAAATCAATCAA 199
|.|||||||.||.||||.||||||..|..||||||||||.||.||..|.|
RBAM_032020__ 147 CCTTGAAGCAAAAGAAAGAGAATTGTCTAAGCTTCAGGACAAGCAGGCTA 196
BSNT_05297___ 200 AGATTGAAAAAGAACTGAAAGACATTAACGCTAAGGCGCTTGATACAAGC 249
||||||||||||||||||||||||||||||||||.|||.|.|||||||||
RBAM_032020__ 197 AGATTGAAAAAGAACTGAAAGACATTAACGCTAAAGCGTTGGATACAAGC 246
BSNT_05297___ 250 AACAAGATCGAAGATAAAAAAGAAGAAAACGATAAAAC--AAAAGAAGAA 297
||.||.||||||||||||||||..||||||||.||||| |||||.||
RBAM_032020__ 247 AATAAAATCGAAGATAAAAAAGCTGAAAACGAAAAAACGAAAAAGCAG-- 294
BSNT_05297___ 298 ATCAAAAAACTAAAAAAAGAGATTAAAGAAACAGAAGCACGCATCGAAAA 347
|||....|..|.||||||||.||.||||||||||||||.||.||.|||||
RBAM_032020__ 295 ATCGCTGATTTGAAAAAAGAAATCAAAGAAACAGAAGCGCGTATTGAAAA 344
BSNT_05297___ 348 ACGCAATGAAATCCTGAAAAAACGCGTTCGTTCTTTACAGGAAAGCGGCG 397
||||||||||||||||||||||||||||||||||||||||||||.|||||
RBAM_032020__ 345 ACGCAATGAAATCCTGAAAAAACGCGTTCGTTCTTTACAGGAAAACGGCG 394
BSNT_05297___ 398 GATCTCAAGGATACATAGATGTTCTTCTAGGATCAACAAGCTTTGGTGAC 447
|.||||||||||||||||||||||||.||||..|.||||||||.||.|||
RBAM_032020__ 395 GTTCTCAAGGATACATAGATGTTCTTTTAGGGGCGACAAGCTTCGGAGAC 444
BSNT_05297___ 448 TTTATCTCTCGTGCGACTGCGGTTTCATCTATTGTGGACGCAGACAAAGA 497
||.||.||.||||||||||||||.||.|||||.||.||.||.||.|||||
RBAM_032020__ 445 TTCATTTCCCGTGCGACTGCGGTATCTTCTATCGTTGATGCGGATAAAGA 494
BSNT_05297___ 498 TTTAATCAAACAGCAAGAGCAGGATAAAGCGAAGCTCGAAGATTCTGAAG 547
..|.|||||||||||.|||||||||||||||||.||||||||..|.||||
RBAM_032020__ 495 CCTGATCAAACAGCAGGAGCAGGATAAAGCGAAACTCGAAGACGCAGAAG 544
BSNT_05297___ 548 CGGATTTGAATGATAAGCTGAAAGAAGTTCAAGCTGCAT-TGGCTAAATT 596
|.||..|.||.|..|||||||||.|||||||||.|| || |.||.|||.|
RBAM_032020__ 545 CTGAACTTAACGTGAAGCTGAAAAAAGTTCAAGATG-ATCTTGCGAAACT 593
BSNT_05297___ 597 AGAAACAATGCAAAAAGACCTTGATAAACAGCTTAATGAAAAAGACAAGC 646
.||..|.||||||||||||||..|.|||||||||.||.|.||||||||||
RBAM_032020__ 594 CGAGTCTATGCAAAAAGACCTGAACAAACAGCTTGATCAGAAAGACAAGC 643
BSNT_05297___ 647 TTTTCGACGAAGCAAAAGCAA--GCCAAAAGAAAACGGCTAAAGCGATTT 694
|||||||||||||.||| || ||||.||.|||.|||||...||.||.|
RBAM_032020__ 644 TTTTCGACGAAGCGAAA--AACGGCCAGAAAAAAGCGGCTTCCGCTATCT 691
BSNT_05297___ 695 CTGAATTAAAATCAGAGGCGTCTGAACTTGCAAATCAAAAAGCAAATACT 744
||||..|.|||..|||.||.||..|.|||||||||.|||||||..|.|||
RBAM_032020__ 692 CTGATCTGAAAAAAGAAGCATCAAAGCTTGCAAATGAAAAAGCTGACACT 741
BSNT_05297___ 745 GAAGCTGAAC--AAGCACGCATCAAAAAAGAACAAGAAGCAGCGGCTGCT 792
|||...|||| ||| |||||.|||...||.||.|..|||||||||||.
RBAM_032020__ 742 GAAAAAGAACAGAAG--CGCATTAAAGCTGAGCAGGCTGCAGCGGCTGCC 789
BSNT_05297___ 793 TTGATCAAAAAGCAGGAAGAAGCACAAAAAGCATCTGATG----AAACAC 838
.||||||||||.|||||||||||.||||||||.|||||.| |||| |
RBAM_032020__ 790 CTGATCAAAAAACAGGAAGAAGCGCAAAAAGCTTCTGAAGACCAAAAC-C 838
BSNT_05297___ 839 AAACAGATGACAGCCAAACGGC---------TACAAC--TGAATCAGCAA 877
|||.||||||||||||..|||| ||.||| |||| ||
RBAM_032020__ 839 AAAAAGATGACAGCCAGCCGGCACCGGCGGTTAAAACTGTGAA-----AA 883
BSNT_05297___ 878 AAG---------CAAGCTCATCTGATGATTCTTCAGACAATTCTTCTAAC 918
||| |||..||||||| ||||.|||.||
RBAM_032020__ 884 AAGCGGCTGTTTCAACATCATCTG---------------ATTCATCTGAC 918
BSNT_05297___ 919 GGTTC-ATCAAAC-----AGCTCGTCTAACGGCTCATCTTCTAAGAAGAG 962
.|.|| |.||||| |||.|.|| .|||..|||.|||.|.||.||
RBAM_032020__ 919 AGCTCAAGCAAACCGAAGAGCACTTC---AGGCGGATCATCTCATAACAG 965
BSNT_05297___ 963 CAGCGGCTCAAACAGCAATTC---AGGCGGCACTGTTA--TCAGTAACTC 1007
|.||||.|||.| ..|||| .|||||..|||||| ||| ||.||
RBAM_032020__ 966 CGGCGGTTCAGA---TGATTCTGACGGCGGATCTGTTATTTCA--AATTC 1010
BSNT_05297___ 1008 TGGCGGAATTGAAGGCGCGATCAGCGTTGGTTCAAGCATTGTAGGACAAT 1057
.|||||.|||||||||||.||||||||.||.||||||.||||.||.||||
RBAM_032020__ 1011 AGGCGGTATTGAAGGCGCCATCAGCGTAGGATCAAGCCTTGTGGGTCAAT 1060
BSNT_05297___ 1058 CTCCGTACAAGTTTGGCGGCGGACGCAGTCAGTCTGATATCAACAACCGT 1107
|.|||||||||||.|||||||||||||.|||.||.|||||..||||||||
RBAM_032020__ 1061 CCCCGTACAAGTTCGGCGGCGGACGCACTCAATCCGATATTGACAACCGT 1110
BSNT_05297___ 1108 ATTTTTGACTGCTCATCATTCGTACGCTGGGCATACGCTTCTGCAGGTGT 1157
||||||||||||||.|||||||||||||||||.||.|||...|||||.||
RBAM_032020__ 1111 ATTTTTGACTGCTCTTCATTCGTACGCTGGGCTTATGCTAACGCAGGCGT 1160
BSNT_05297___ 1158 TAACCTTGGACCTGTAGGCGGGACAACTACTGATACGTTAGTTGGCAGAG 1207
|||.||.|||||||.|.||||.||||..||.|||||.|||.|.||.||||
RBAM_032020__ 1161 TAATCTCGGACCTGCAAGCGGCACAAACACAGATACATTAATCGGAAGAG 1210
BSNT_05297___ 1208 GACAAGCTGTCAGCGCGTCTGAAATGAAACGCGGAGACCTTGTGTTCTTT 1257
|..||||.||.|||||||||||.|||||||||||||||.|.||.|||||.
RBAM_032020__ 1211 GTAAAGCAGTAAGCGCGTCTGACATGAAACGCGGAGACTTAGTATTCTTC 1260
BSNT_05297___ 1258 GACACTTACAAAACAAATGGACACGTAGGAATCTACTTAGGAAACGGTAC 1307
.|.||.||.||||||||.||.|||||.||.|||||||||||.|||||.||
RBAM_032020__ 1261 AATACGTATAAAACAAACGGCCACGTCGGCATCTACTTAGGTAACGGAAC 1310
BSNT_05297___ 1308 TTTCCTAAACGACAATACATCTCATGGCGTATCTGTTGACTCTATGAGCA 1357
.|||||.|||||.||||||||.||.||.|||||..||||.||||||||||
RBAM_032020__ 1311 GTTCCTGAACGATAATACATCACACGGTGTATCCATTGATTCTATGAGCA 1360
BSNT_05297___ 1358 ATCCTTACTGGAAAAAAGCATTTAAAGGCGTTGTAAGACGTGTTGTTCAA 1407
|.|||||||||||.||||||||.||.|||..||||||||||||.||.|||
RBAM_032020__ 1361 ACCCTTACTGGAAGAAAGCATTCAACGGCAATGTAAGACGTGTCGTGCAA 1410
BSNT_05297___ 1408 TAA 1410
|||
RBAM_032020__ 1411 TAA 1413
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