Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05296 and RBAM_032010
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:44
# Commandline: needle
# -asequence dna-align/BSNT_05296___trxB.1.9828.seq
# -bsequence dna-align/RBAM_032010___trxB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05296___trxB-RBAM_032010___trxB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05296___trxB-RBAM_032010___trxB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05296___trxB
# 2: RBAM_032010___trxB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 957
# Identity: 782/957 (81.7%)
# Similarity: 782/957 (81.7%)
# Gaps: 30/957 ( 3.1%)
# Score: 3289.0
#
#
#=======================================
BSNT_05296___ 1 ---GTGTCAGAAGAAAAAATTTATGACGTGATTATAATCGGCGCGGGCCC 47
|||||||||||||||||||||||.|||||.||.|||||||||||.||
RBAM_032010__ 1 ATGGTGTCAGAAGAAAAAATTTATGATGTGATCATTATCGGCGCGGGTCC 50
BSNT_05296___ 48 TGCTGGGATGACGGCCGCTGTATACACATCAAGAGCGAATTTATCGACAT 97
.||.||||||||.||.|||||.|||||||||.|||||||.|||||.||||
RBAM_032010__ 51 GGCGGGGATGACCGCTGCTGTTTACACATCACGAGCGAACTTATCCACAT 100
BSNT_05296___ 98 TAATGATTGAAAGAGGAATTCCTGGCGGACAAATGGCCAATACGGAAGAT 147
|||||||.||||||||||||||.|||||.||.||||||||.|||||.|||
RBAM_032010__ 101 TAATGATCGAAAGAGGAATTCCGGGCGGCCAGATGGCCAACACGGAGGAT 150
BSNT_05296___ 148 GTAGAAAACTATCCTGGATTCGAAAGTATCCTTGGGCCTGAGCTTTCTAA 197
||.|||||||||||.||.||.|||||.||.||.||.|||||.||||||||
RBAM_032010__ 151 GTTGAAAACTATCCGGGTTTTGAAAGCATTCTCGGCCCTGAACTTTCTAA 200
BSNT_05296___ 198 CAAAATGTTTGAACACGCGAAAAAATTCGGCGCTGAATACGCTTATGGCG 247
.||||||||||||||.||||||||||||||.||.|||||.||.||.||||
RBAM_032010__ 201 TAAAATGTTTGAACATGCGAAAAAATTCGGTGCGGAATATGCGTACGGCG 250
BSNT_05296___ 248 ATATTAAAGAGGTCATTGACGGCAAAGAGTACAAAGTAGTCAAAGCTGGT 297
||||||||||..||.|||||||.|||||.||.|||...||||||||.|||
RBAM_032010__ 251 ATATTAAAGAAATCGTTGACGGTAAAGAATATAAAACGGTCAAAGCCGGT 300
BSNT_05296___ 298 TCAAAGGAATATAAAGCCCGTGCTGTCATCATTGCTGCAGGTGCGGAATA 347
|||||.|||||||||||.|||||..||.|||||.||||.||.||||||||
RBAM_032010__ 301 TCAAAAGAATATAAAGCGCGTGCCATCGTCATTTCTGCCGGAGCGGAATA 350
BSNT_05296___ 348 TAAAAAAATCGGCGTGCCTGGCGAAAAAGAATTGGGCGGACGCGGTGTAT 397
.|||||.|||||.||.||.||||||||||||.|||||||.|||||.||||
RBAM_032010__ 351 CAAAAAGATCGGTGTTCCCGGCGAAAAAGAACTGGGCGGCCGCGGCGTAT 400
BSNT_05296___ 398 CTTATTGTGCAGTATGTGACGGCGCTTTCTTTAAAGGCAAAGAACTTGTC 447
|.||.||.||.||.|||||||||||.|||||||||...|||||.||||||
RBAM_032010__ 401 CGTACTGCGCGGTTTGTGACGGCGCGTTCTTTAAAAATAAAGAGCTTGTC 450
BSNT_05296___ 448 GTTGTTGGCGGCGGAGATTCCGCGGTTGAAGAAGGCGTATATCTGACTCG 497
|||||.|||||||||||.|||||.||||||||||||||.||||||||.||
RBAM_032010__ 451 GTTGTCGGCGGCGGAGACTCCGCCGTTGAAGAAGGCGTCTATCTGACACG 500
BSNT_05296___ 498 TTTCGCTTCAAAAGTAACGATTGTTCACAGACGTGATAAACTCCGTGCTC 547
.||||||||||||||.||.||.||||||||||||||.|||.|.|||||.|
RBAM_032010__ 501 CTTCGCTTCAAAAGTCACCATCGTTCACAGACGTGACAAATTGCGTGCGC 550
BSNT_05296___ 548 AAAGTATTCTTCAAGCGAGAGCATTTGATAATGAAAAAGTTGACTTCCTA 597
||||.||||||||.|||.|.||.|||||.|||||.|||.||||||||..|
RBAM_032010__ 551 AAAGCATTCTTCAGGCGCGTGCCTTTGACAATGAGAAAATTGACTTCAAA 600
BSNT_05296___ 598 TGGAACAAAACCGTGAAGGAAATTCATGAGGAAAACGGCAAAGTCGGTA- 646
||||||||||||||.||.|||||.||||||||||||||.||||||||.|
RBAM_032010__ 601 TGGAACAAAACCGTAAAAGAAATCCATGAGGAAAACGGAAAAGTCGGCAG 650
BSNT_05296___ 647 ACGTAACGCTTGTCGATACGGTAACCGGTGAAGA--AAGTGAATTCAAAA 694
|| |.||.|||||.|||||.||.||.||.||||| || |||||||||.
RBAM_032010__ 651 AC-TTACTCTTGTGGATACCGTGACGGGAGAAGAGGAA--GAATTCAAAG 697
BSNT_05296___ 695 CAGACGGCGTATTCATTTACATCGGCATGCTTCCTCTGTCTAAACCGTTT 744
|.||||||||.||.|||||.|||||.||||||||.||.|||||||||||.
RBAM_032010__ 698 CTGACGGCGTCTTTATTTATATCGGTATGCTTCCGCTTTCTAAACCGTTC 747
BSNT_05296___ 745 GAAAATCTGGGCATTACGAATGAAGAAGGCTACATCGAAACAAACGAACG 794
||.||..|||||||.||.|||||||||||||||||.||||||||||..|.
RBAM_032010__ 748 GAGAACTTGGGCATCACAAATGAAGAAGGCTACATTGAAACAAACGCTCA 797
BSNT_05296___ 795 CATGGAGACAAAGGTTGAAGGAATTTTCGCTGCCGGAGACATTCGCGAAA 844
.|||||.|||||.|||..|||.||||||||.||.||||||||.||.||||
RBAM_032010__ 798 AATGGAAACAAAAGTTCCAGGTATTTTCGCCGCGGGAGACATCCGTGAAA 847
BSNT_05296___ 845 AATCACTGCGCCAAATCGTAACGGCTACAGGAGACGGAAGTATTGCGGCA 894
||.|.||.|||||.|||||||||||.|||||.|||||||||||||||||.
RBAM_032010__ 848 AAACGCTCCGCCAGATCGTAACGGCGACAGGCGACGGAAGTATTGCGGCT 897
BSNT_05296___ 895 CAAAGCGTACAGCATTATGTCGAAGAGCTTCAATAA-------------- 930
||||||||.|||||||||||.|||||||||.|..||
RBAM_032010__ 898 CAAAGCGTTCAGCATTATGTGGAAGAGCTTGAGGAAACGCTCAAAACCGT 947
BSNT_05296___ 930 ------- 930
RBAM_032010__ 948 TAAATAA 954
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