Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05276 and RBAM_031890

See Amino acid alignment / Visit BSNT_05276 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:42
# Commandline: needle
#    -asequence dna-align/BSNT_05276___yvdD.1.9828.seq
#    -bsequence dna-align/RBAM_031890___yvdD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05276___yvdD-RBAM_031890___yvdD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05276___yvdD-RBAM_031890___yvdD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05276___yvdD
# 2: RBAM_031890___yvdD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 580
# Identity:     467/580 (80.5%)
# Similarity:   467/580 (80.5%)
# Gaps:           8/580 ( 1.4%)
# Score: 1873.0
# 
#
#=======================================

BSNT_05276___      1 TTGAAAACCATTTGTGTATTTGCGGGATCAAACCCTGGGGGAAATGAAGC     50
                     .|||||||||||||||||||||||||.||||||||.||||.||||||||.
RBAM_031890__      1 ATGAAAACCATTTGTGTATTTGCGGGGTCAAACCCGGGGGTAAATGAAGA     50

BSNT_05276___     51 GTATAAAAGAAAAGCGGCAGAGCTTGGCGTGTATATGGCTGAGCAGGGAA    100
                     |||.|||.|.||||||||.||.||.||.|..||||||||.||||||||||
RBAM_031890__     51 GTACAAACGCAAAGCGGCCGAACTGGGTGAATATATGGCGGAGCAGGGAA    100

BSNT_05276___    101 TCGGCCTTGTCTATGGGGGCTCCCGCGTCGGCTTGATGGGCACGATTGCC    150
                     ||||||||||.||.||.||.||.||..||||..|||||||.||..|.|||
RBAM_031890__    101 TCGGCCTTGTTTACGGCGGTTCACGGATCGGTCTGATGGGAACCGTCGCC    150

BSNT_05276___    151 GACGCGATTATGGAAAACGGCGGAACTGCAATCGGGGTCATGCCGAGCGG    200
                     ||||||.|.||||.|..||||||||..||..||||.||||||||||||||
RBAM_031890__    151 GACGCGTTAATGGCAGGCGGCGGAAAAGCTGTCGGCGTCATGCCGAGCGG    200

BSNT_05276___    201 TTTGTTCAGCGGGGAGGTTGTCCATCAAAACCTGACTGAGCTGATTGAAG    250
                     ..||||||||||.||||||||.|||||.||.|||||.|||||||||||||
RBAM_031890__    201 GCTGTTCAGCGGAGAGGTTGTTCATCAGAATCTGACGGAGCTGATTGAAG    250

BSNT_05276___    251 TAAACGGGATGCATGAACGAAAGGCTAAAATGAGCGAGCTGGCGGACGGC    300
                     |.|.|||.||||||||.||.||.||.||||||||.||.||.||.||.||.
RBAM_031890__    251 TCAGCGGCATGCATGAGCGGAAAGCGAAAATGAGTGAACTTGCCGATGGG    300

BSNT_05276___    301 TTTATCTCGATGCCGGGCGGCTTCGGTACATATGAAGAATTATTTGAAGT    350
                     |..||..|.|||||.|||||||||||.|||||||||||.|||||||||||
RBAM_031890__    301 TACATTGCCATGCCCGGCGGCTTCGGAACATATGAAGAGTTATTTGAAGT    350

BSNT_05276___    351 GCTGTGCTGGGCACAGATCGGCATCCACCAAAAGCCAATCGGACTGTACA    400
                     |||.||||||||.||.||||||||.||.|||||.||.|||||||||||||
RBAM_031890__    351 GCTATGCTGGGCGCAAATCGGCATTCATCAAAAACCGATCGGACTGTACA    400

BSNT_05276___    401 ATGTAAACGGATATTTTGAACCAATGATGAAAATGGTGAAATACAGCATT    450
                     ||||.|||||.||||||||.||.||||||||.|||||.||.|||||||||
RBAM_031890__    401 ATGTGAACGGGTATTTTGAGCCGATGATGAAGATGGTCAAGTACAGCATT    450

BSNT_05276___    451 CAAGAAGGGTTTTCTAACGAATCGCACCTAAAACTGATTCACAGCTCGTC    500
                     ||.|||||.|||||.||.||.||.||..|.||.|||||.|||||.||.||
RBAM_031890__    451 CAGGAAGGATTTTCGAATGAGTCTCATTTGAAGCTGATACACAGTTCCTC    500

BSNT_05276___    501 ACGGCCGGATGAGTTAATTGAGCAAATGCAAAAT---TATTCTTATCCGA    547
                     .||||||||||||.|.||||||||.|||   |||   |||.|.||.||||
RBAM_031890__    501 CCGGCCGGATGAGCTGATTGAGCAGATG---AATCGGTATACATACCCGA    547

BSNT_05276___    548 TTTTAGAAAAAAAGTGGACAGAAATT-TAA    576
                     |||||||.||.||.||| |.|.|||| |||
RBAM_031890__    548 TTTTAGATAAGAAATGG-CGGGAATTGTAA    576


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