Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05190 and RBAM_031640
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:40
# Commandline: needle
# -asequence dna-align/BSNT_05190___yveN.1.9828.seq
# -bsequence dna-align/RBAM_031640___epsD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05190___yveN-RBAM_031640___epsD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05190___yveN-RBAM_031640___epsD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05190___yveN
# 2: RBAM_031640___epsD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1186
# Identity: 832/1186 (70.2%)
# Similarity: 832/1186 (70.2%)
# Gaps: 86/1186 ( 7.3%)
# Score: 2769.5
#
#
#=======================================
BSNT_05190___ 1 ATGACGAAAAAGATATTGTTTTGCGCGACTGTTGATTATCATTTTAAGGC 50
|||||||||||..||||.||.|||||.|||||.||||||||||||||.||
RBAM_031640__ 1 ATGACGAAAAAAGTATTATTCTGCGCCACTGTCGATTATCATTTTAAAGC 50
BSNT_05190___ 51 CTTTCACCTCCCTTATTTTAAATGGTTCAAACAAATGGGCTGGGAGGTTC 100
||||||.||.||.||||||.|||||||..|..|.||||||||||||||.|
RBAM_031640__ 51 CTTTCATCTTCCGTATTTTCAATGGTTTCAGGATATGGGCTGGGAGGTGC 100
BSNT_05190___ 101 ATGTCGCCGCGAACGGACAA-ACCAAGCTGCCGTATGTGGATGAGAAATT 149
|.|||||.||...||| ||| |..||.||.||||..||.|||||.||.||
RBAM_031640__ 101 ACGTCGCGGCAGGCGG-CAATATGAATCTTCCGTTCGTTGATGAAAAGTT 149
BSNT_05190___ 150 CTCCATCCCGATTCGCAGGTCACCTTTTGCCCCTCAGAACCTGGCCGTTT 199
.|||||.|||||.||..|.||.||.|||...||..|.||.||..|.||||
RBAM_031640__ 150 TTCCATTCCGATCCGGCGCTCGCCGTTTCATCCCGAAAATCTTTCTGTTT 199
BSNT_05190___ 200 ATAGGCAGCTGAAGAAAGTGATC------GACACCTATGAATACGACATT 243
|.||||.||| ||||..|||| |||| |.|..||||||||.
RBAM_031640__ 200 ACAGGCGGCT---GAAACGGATCATTCAGGACA---ACGGCTACGACATG 243
BSNT_05190___ 244 GTCCATTGCCATACACCGGTCGGCGGCGTTCTCGCCAGACTGGCGGCGAG 293
.|.||.||.|||||.||||||||||||||.||.||..|.||.||||||||
RBAM_031640__ 244 ATTCACTGTCATACGCCGGTCGGCGGCGTGCTTGCACGCCTTGCGGCGAG 293
BSNT_05190___ 294 GCAGGCACGGCGGCACGGAACAAAGGTGCTGTATACAGCGCACGGATTTC 343
.||.||.||.|...|.||.||||||||||||||.||.||||||||.||||
RBAM_031640__ 294 ACAAGCGCGCCAAAAAGGGACAAAGGTGCTGTACACCGCGCACGGCTTTC 343
BSNT_05190___ 344 ACTTCTGCAAAGGAGCACCAATGAAAAATTGGCTTCTTTACTATCCGGTC 393
||||||||.|.|||||.||..|||||||.|||||||||||.||.|||.||
RBAM_031640__ 344 ACTTCTGCGACGGAGCGCCCCTGAAAAACTGGCTTCTTTATTACCCGATC 393
BSNT_05190___ 394 GAGAAATGGCTTTCAGCATATACGGACTGCCTGATTACGATTAATGAAGA 443
||.||||..|||||..|.||||||||.||..|.|||||||||||||||||
RBAM_031640__ 394 GAAAAATTTCTTTCTTCTTATACGGATTGTTTAATTACGATTAATGAAGA 443
BSNT_05190___ 444 GGATTATAAACGGGC----GAAAGGACTTCAAAGGCCG-----GGCGGAA 484
||||||..||||||| .|||.|| .|||..|.| ||||
RBAM_031640__ 444 GGATTACGAACGGGCCAAGCAAATGA---AAAAAACAGATTACGGCG--- 487
BSNT_05190___ 485 GGACGCAGAAAATTCACGGCATTGGCGTCAACACCGAGCGTTTCCGGCCT 534
||.|||||||.||||||||.|||||.||.||.||..|.||.||.|||
RBAM_031640__ 488 ---CGAAGAAAATACACGGCATCGGCGTGAATACAGACAGGTTTCGCCCT 534
BSNT_05190___ 535 GTCAGTCCGATAGAGCAG-CAAAAACTCAGAGAAAAACACGGGTTCCGTA 583
||.||.|.|..|||| || .||...||.||||||||||||||.|||.|..
RBAM_031640__ 535 GTGAGCCGGGAAGAG-AGTGAACGTCTGAGAGAAAAACACGGCTTCAGCG 583
BSNT_05190___ 584 AAGATGATTTTATATTGGTTTATCCGGCTGAGCTCAATCTG-AACAAAAA 632
..|..||.|||||..|.||.|||||.||||| .|.||.|.| ||.|||||
RBAM_031640__ 584 CCGGGGAATTTATTCTCGTATATCCCGCTGA-ATTAAACGGCAATAAAAA 632
BSNT_05190___ 633 CCAGAAGCAGT--TAATAGAAGCCGCAGCCTTGCTAAAAGAAAAA----A 676
|||| |.|.| |.||.||..|.||.||..|||| |||.|| |
RBAM_031640__ 633 CCAG--GGACTTCTCATTGAGACTGCGGCACTGCT----GAAGAACCGCA 676
BSNT_05190___ 677 TTCCTTCGCTCCGCCTTGTGTTTGCCGGGGAAGGGGCAATGGAACAAACG 726
|.||...|||....||.||.||||||||.|||||.||.||||||.|..||
RBAM_031640__ 677 TCCCGGAGCTGAAACTCGTATTTGCCGGAGAAGGCGCGATGGAAGAGCCG 726
BSNT_05190___ 727 TATC----AAACGTTAGCTGAAAAGCTTGGTGCCTCCGCCAATGTCTGTT 772
|| | |||.| ||||||...||.||||..||.|.||.|||..|.|
RBAM_031640__ 727 TA-CAGAAAAAAG---GCTGAATCACTCGGTGTATCTGACATTGTGCGGT 772
BSNT_05190___ 773 TTTACGGCTTTTGCAGCGACATACATAAGCTGATTCAGCTTGCGGATGTA 822
|||||||.||||||.||||.||.|||.|.||||||||||||||.|||.|.
RBAM_031640__ 773 TTTACGGTTTTTGCCGCGATATTCATGAACTGATTCAGCTTGCTGATCTG 822
BSNT_05190___ 823 TCTGTCGCATCCAGCATTAGAGAGGGCCTCGGCATGAATGTGCTTGAGGG 872
||||||||.||.|||||..|.||.||.||||||||||||.|||||||.||
RBAM_031640__ 823 TCTGTCGCCTCAAGCATCCGCGAAGGGCTCGGCATGAATCTGCTTGAAGG 872
BSNT_05190___ 873 AATGGCGGCAGAAAAACCGGCGATCGCCACAGATAATCGCGGGCATCGGG 922
||||||.||.|||||.|||||..|.|||.|.||.||..|.|||||.||.|
RBAM_031640__ 873 AATGGCTGCCGAAAAGCCGGCCGTTGCCGCGGACAACAGGGGGCACCGTG 922
BSNT_05190___ 923 AAATCATTCG-CGACGGAGAAAACGGTTTTCTGAT-----CAAAATCGGT 966
|.|||| ||| .|||||.|..|||||||||||..| | |||.
RBAM_031640__ 923 AGATCA-TCGAAGACGGCGTGAACGGTTTTCTCGTGCCGGC-----CGGG 966
BSNT_05190___ 967 GACAGTGCTGCTTTTGCCCGCCGGATTGAACAGCTTTACCATAAG----C 1012
|||||.||.||.||||||...|||||||||.||||.|||| | |
RBAM_031640__ 967 GACAGCGCGGCGTTTGCCGATCGGATTGAAAAGCTGTACC----GCTCCC 1012
BSNT_05190___ 1013 CGGAGCTCTGCCGAAAGC--TGGGACAGGAAGGCCGAAAAACAGCCTTGC 1060
|| |.|||||..||||| ||||.||..||||.||.|..||.||.....
RBAM_031640__ 1013 CG--GGTCTGCGAAAAGCAATGGGGCAAAAAGGGCGCAGGACGGCGGAAT 1060
BSNT_05190___ 1061 GCTTCTCGGAGGCGCGAACGGTGGAAGAAATGGCAGATATTTATTCCGCG 1110
|.||.|||||..|.||.|||||..|.||||||||..|.|||||..|||..
RBAM_031640__ 1061 GTTTTTCGGAAACACGTACGGTAAAGGAAATGGCGCACATTTACGCCGGT 1110
BSNT_05190___ 1111 TACATGGATATGGATATAAAGGAGAAAAGCGTATGA 1146
| |||||||||.|||||||||||||||||||
RBAM_031640__ 1111 T------ATATGGATAAAAAGGAGAAAAGCGTATGA 1140
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