Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05182 and RBAM_031590

See Amino acid alignment / Visit BSNT_05182 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:40
# Commandline: needle
#    -asequence dna-align/BSNT_05182___yveS.1.9828.seq
#    -bsequence dna-align/RBAM_031590___epsI.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05182___yveS-RBAM_031590___epsI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05182___yveS-RBAM_031590___epsI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05182___yveS
# 2: RBAM_031590___epsI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1114
# Identity:     826/1114 (74.1%)
# Similarity:   826/1114 (74.1%)
# Gaps:          74/1114 ( 6.6%)
# Score: 2961.5
# 
#
#=======================================

BSNT_05182___      1 ATGTCGTTACAATCGTTGAAAATCAATTTTGCAGAATGGCTGCTGCTAAA     50
                     ||||||.|||||||.||.|||||||||.|.||.|||||||||.||||.||
RBAM_031590__      1 ATGTCGATACAATCTTTAAAAATCAATCTCGCGGAATGGCTGTTGCTTAA     50

BSNT_05182___     51 GGTCAAATACCCGTCCCAAT---ATTGGCTGGGAGCGGCAGATCAGCCGG     97
                     ||||||||||||||||||||   |||   |.|||.||||||      |||
RBAM_031590__     51 GGTCAAATACCCGTCCCAATTTCATT---TCGGAACGGCAG------CGG     91

BSNT_05182___     98 TAAAGGCCGCAGC--ACATC----AGAAAAAA-ATCATACTGACCCTGCT    140
                      |..||.||.|||  |||.|    |||||||| |||||.|||||.|||||
RBAM_031590__     92 -ATGGGGCGGAGCTTACAGCGGCAAGAAAAAAGATCATTCTGACGCTGCT    140

BSNT_05182___    141 GCCGTCCCATGACAATTTGGGAGATCACGCAATTGCTTATGCCAGCAAGG    190
                     .||||||||.||.|||.|.||.||||||||.||.||.||.||.|||||..
RBAM_031590__    141 CCCGTCCCACGATAATCTCGGCGATCACGCCATCGCCTACGCAAGCAAAA    190

BSNT_05182___    191 CATTTCTTGAGCAAGAATACCCGGACTTTGACATCGTCGAGGTTGATATG    240
                     |.||||||||.|..||.||.||.||.||||||||.||||||||.||||||
RBAM_031590__    191 CGTTTCTTGAACGGGAGTATCCCGATTTTGACATTGTCGAGGTGGATATG    240

BSNT_05182___    241 AAGGACATTTACAAATCAGCAAAAAGC-CTGATCCGCTCGCGCCATCCGG    289
                     |||||.||.||||.|||.|| |||||| ||||||.....||||||.||.|
RBAM_031590__    241 AAGGATATATACAGATCCGC-AAAAGCACTGATCAAAAAGCGCCACCCCG    289

BSNT_05182___    290 AGGATATGGTCTTTATCATCGGCGGCGGAAACATGGGGGATATATACCGT    339
                     |.||||||||.||.||||||||||||||.||||||||||||.|.|||||.
RBAM_031590__    290 ATGATATGGTATTCATCATCGGCGGCGGGAACATGGGGGATTTGTACCGG    339

BSNT_05182___    340 TATGAGGAGTGGACGCGCCGCTTCATCATTAAAACATTCCATGACTATCG    389
                     ||||||||.|||||.||||||||..||||.||||||||||...|.|||||
RBAM_031590__    340 TATGAGGAATGGACACGCCGCTTTGTCATAAAAACATTCCGGCAATATCG    389

BSNT_05182___    390 GGTTGTCCAGCTTCCGGCAACGGCTCATTTTTCTGACACGAAAAAAGGG-    438
                     |.|.||.|||||||||||.||||||||.|||||||| |..||||||||| 
RBAM_031590__    390 GATCGTTCAGCTTCCGGCGACGGCTCACTTTTCTGA-ATCAAAAAAGGGA    438

BSNT_05182___    439 CGCAAAGAGCTGAAACGGGCACAGAAAA-TTTATAATGCGCACCCCGGCC    487
                     ||.||.||.|||||.||.|| |.||||| |.||.||||||||.||||.||
RBAM_031590__    439 CGGAAGGAACTGAAGCGCGC-CCGAAAAGTGTACAATGCGCATCCCGACC    487

BSNT_05182___    488 TGTTGCTGATGGCGCGGGATGAAACAACGTATCAATTTATGAAACAGCAT    537
                     |.|||.|.||||||.|.|||||.||.||||||||||..|||||.|..|||
RBAM_031590__    488 TTTTGTTAATGGCGAGAGATGAGACGACGTATCAATGGATGAAGCGCCAT    537

BSNT_05182___    538 TTTCAAGAAAAAACAATTTTGAAGCAGCCGGACATGGTGCTGTATTTAGA    587
                     ||||..|.|||||||.|..|.||.|||||.||||||||..|.|||||.||
RBAM_031590__    538 TTTCCCGGAAAAACAGTGCTCAAACAGCCTGACATGGTCTTATATTTGGA    587

BSNT_05182___    588 TAGAAGCAAGACCCCCGCAGAACGC--GAAGGGGTTTATATGTGTTTGCG    635
                     ||.||||  ||.|...|||.|.|||  ||||||.|.||..|.|||||.||
RBAM_031590__    588 TAAAAGC--GAGCGGGGCATACCGCGGGAAGGGATCTACCTCTGTTTACG    635

BSNT_05182___    636 CGAGGATCAGGAAAGCGTGCTTCAGGAGGAGCAGAGGA---ACCGA--GT    680
                     .||||||.||||.||.|.|||    ||.| ||.|||||   |.|||  ||
RBAM_031590__    636 GGAGGATAAGGAGAGTGCGCT----GACG-GCTGAGGACAGAACGATGGT    680

BSNT_05182___    681 CAAAGCTGCGTTATTTG----AGGAATTCAGCGAGATCAAACCCTTTACG    726
                     .||||..||    ||||    |.||.|.|.|.|||.|..|..||||||||
RBAM_031590__    681 AAAAGAAGC----TTTGGCAAAAGAGTACGGAGAGCTGTATTCCTTTACG    726

BSNT_05182___    727 ACAACGATCGGGCGCCGGGTCAGCCGCGATACACGCGAACAAGAACTTGA    776
                     ||.|||.||||.||..|||||||||||.||||.||.|||.|.||.||.||
RBAM_031590__    727 ACGACGGTCGGCCGGAGGGTCAGCCGCCATACGCGTGAAAAGGAGCTGGA    776

BSNT_05182___    777 AGCGCTGTGGTCTAAGCTGCAAAGCGCAGAAGCCGTCGTCACTGACAGGC    826
                     .|||||.|||..||.||||.||.||||.||||||||||||||||||||||
RBAM_031590__    777 GGCGCTTTGGAATACGCTGAAAGGCGCGGAAGCCGTCGTCACTGACAGGC    826

BSNT_05182___    827 TTCATGGCATGATTTTTTGCGCGCTGACAGGAACGCCGTGTGTTGTCATT    876
                     ||||.||.|||||||||||.||||||||...||||||.|||||.||||||
RBAM_031590__    827 TTCACGGGATGATTTTTTGTGCGCTGACGAAAACGCCTTGTGTCGTCATT    876

BSNT_05182___    877 CGCTCCTTTGACCATAAGGTGATGGAGGGCTATCAATGGCTTAAAGACAT    926
                     ||.||.|||||.||||||||||||||.||||||||||||||.|||.||||
RBAM_031590__    877 CGTTCGTTTGATCATAAGGTGATGGAAGGCTATCAATGGCTGAAAAACAT    926

BSNT_05182___    927 CCCGTTCATGAAGCTGATAGAACATCCGGAGCCAG-AGCGCGTAACAGCC    975
                     .|||..|||||...||.|.||||.|||.||.||.| ||| .|||||.|||
RBAM_031590__    927 ACCGAACATGACATTGCTTGAACGTCCAGACCCTGAAGC-TGTAACGGCC    975

BSNT_05182___    976 GCAGTCAATGAGCTTTTAA----CAA-----AAGAAACACCCCGTGCAGG   1016
                     ||.||.||...|||..|.|    |||     |.|||         |..||
RBAM_031590__    976 GCCGTAAACCGGCTGCTCAGCGGCAAGCATGAGGAA---------GGCGG   1016

BSNT_05182___   1017 --CTTTCCG-AGAGATGTGTATTTTAAAGGTCTGCGTGACAAAATCAGCG   1063
                       ||||.|| ||   |||.||||||...||.|||||....||||||||||
RBAM_031590__   1017 TTCTTTGCGCAG---TGTTTATTTTGCCGGGCTGCGCTCGAAAATCAGCG   1063

BSNT_05182___   1064 GTGAAGCGCAATGA   1077
                     ||||.||.||||||
RBAM_031590__   1064 GTGATGCCCAATGA   1077


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