Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05174 and RBAM_031540

See Amino acid alignment / Visit BSNT_05174 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:39
# Commandline: needle
#    -asequence dna-align/BSNT_05174___yvfE.1.9828.seq
#    -bsequence dna-align/RBAM_031540___epsN.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05174___yvfE-RBAM_031540___epsN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05174___yvfE-RBAM_031540___epsN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05174___yvfE
# 2: RBAM_031540___epsN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1232
# Identity:     853/1232 (69.2%)
# Similarity:   853/1232 (69.2%)
# Gaps:         124/1232 (10.1%)
# Score: 2841.0
# 
#
#=======================================

BSNT_05174___      1 ATGCATAAAAAA-------ATCTACTTATCTCCCCCTCATATGAGCGGCA     43
                     ||||| ||.|||       ||.||.||.|||||.||||||||||||||.|
RBAM_031540__      1 ATGCA-AACAAACAAACGGATTTATTTGTCTCCGCCTCATATGAGCGGAA     49

BSNT_05174___     44 GGGAGCAGCACTATATTTCAGAAGCCTTTCGCTCAAACTGGATCGCGCCG     93
                     ..||.|||.|.||.||..||||||||||.||.||.||.|||||.||.|||
RBAM_031540__     50 AAGAACAGGAATACATCGCAGAAGCCTTCCGTTCCAATTGGATTGCCCCG     99

BSNT_05174___     94 CTTGGGCCGCTCGTGAATTCATTTGAAGAACAGCTGGCAGAA----CGAG    139
                     ||.||.||||||||.|||||.|||||||..|.|||.||.|||    ||  
RBAM_031540__    100 CTCGGTCCGCTCGTCAATTCGTTTGAAGCGCGGCTCGCGGAATATGCG--    147

BSNT_05174___    140 TCGGTGT-AAAAGCAGCCGCTGCGGTCGGCTCAGGAACGGCGGCGATTCA    188
                       ||.|| |||||| ||.||.||.||..||||.||||||||.||.||.||
RBAM_031540__    148 --GGAGTGAAAAGC-GCGGCGGCCGTAAGCTCGGGAACGGCCGCCATCCA    194

BSNT_05174___    189 TCTCGCCCTGCGTTTGCTTGAG---GTAAAAGAAGGTGACAGCGTGTTTT    235
                     |||.||||||||   |||||.|   ||.|||.||||.|||...||.||||
RBAM_031540__    195 TCTTGCCCTGCG---GCTTGCGGGTGTGAAAAAAGGAGACGTTGTATTTT    241

BSNT_05174___    236 GCCAGTCCTTCACATTTGTAGCAACCGCCAATCCGATTTTATATGAAAAA    285
                     |.|..|||||.||.|||||.||.||.||.|||||||||.|.|||||..|.
RBAM_031540__    242 GTCCTTCCTTTACGTTTGTCGCCACGGCGAATCCGATTGTGTATGAGCAG    291

BSNT_05174___    286 GCGGTGCCCGTCTTTATTGATTCTGAGCCTGATACGTGGAATATGTCG-C    334
                     ||.|.||||||.|||||||||||.||....||.||||||||||||||| |
RBAM_031540__    292 GCTGAGCCCGTTTTTATTGATTCGGAATGGGAGACGTGGAATATGTCGCC    341

BSNT_05174___    335 CGACAGCCCTTGAAAGAGCATTGGAGGAAGCGAAAAGAAACGGAACACTG    384
                     ||| .||.||.||..|.||..||..|||.||.||..|...|||.|.|||.
RBAM_031540__    342 CGA-TGCGCTGGAGCGGGCGCTGCGGGATGCAAAGCGGCGCGGCAGACTC    390

BSNT_05174___    385 CCAAAAGCGGTTATTGCCGTCAATCTATATGGGCAGAGCGCGAAAATGGA    434
                     ||.||||||||.||.|||||||||||.||.||.||.||||||||||||||
RBAM_031540__    391 CCGAAAGCGGTGATCGCCGTCAATCTCTACGGCCAAAGCGCGAAAATGGA    440

BSNT_05174___    435 TGAAATCGTAAGCCTGTGCGATGCATACGGAGTTCCTGTC--ATTGAGGA    482
                     ||||.|..|.|||||.||.||.||||||||.||  |||||  |||||.||
RBAM_031540__    441 TGAATTAATGAGCCTTTGTGACGCATACGGCGT--CTGTCTGATTGAAGA    488

BSNT_05174___    483 CGCAGCCGAATCTCTCGGAACAGTCTATAAAGGGAAGCAAAGCGGAACAT    532
                     |||.|||||.||..|.|||.||...||||||||.|.|||.|||||.||.|
RBAM_031540__    489 CGCTGCCGAGTCCTTAGGATCAACATATAAAGGCAGGCAGAGCGGCACGT    538

BSNT_05174___    533 TCGGGCGCTTCGGCATTTTTTCATTTAACGGGAACAAAATCATTACCACA    582
                     ||||.||.||||||||||.|||.||||||||.||||||||||||||.|||
RBAM_031540__    539 TCGGCCGTTTCGGCATTTATTCCTTTAACGGCAACAAAATCATTACAACA    588

BSNT_05174___    583 TCAGGGGGAGGGATGCTCGTTTCAAATGATGAAGCCGCAATTGAAAAAGC    632
                     ||.||.||.||.||||||||.||..|.|||||||||||.|||||||||||
RBAM_031540__    589 TCGGGAGGCGGCATGCTCGTGTCTGACGATGAAGCCGCGATTGAAAAAGC    638

BSNT_05174___    633 AAGATTTCTCGCTTCGCAGGCACGAGAACCGGCTGTTCATTATCAGCACA    682
                     .||.|||||.||.||.|||||..||||..|.||.||||||||.|||||||
RBAM_031540__    639 GAGGTTTCTTGCGTCCCAGGCGAGAGATGCCGCCGTTCATTACCAGCACA    688

BSNT_05174___    683 GTCAAATTGGACATAATTACAGGCTGAGCAATATCTTAGCCGGCGTCGGC    732
                     |..|..|.||..||||.||||||||.|||||.||..|.||.|||||.||.
RBAM_031540__    689 GCGAGCTCGGGTATAACTACAGGCTCAGCAACATTCTCGCGGGCGTGGGG    738

BSNT_05174___    733 ATTGCCCAGCTTGAGGTGCTGGATGAGCGAGT--------GGAGACAAGA    774
                     ||..|.|||||.||.|||||.||.||.||.||        |||||.||  
RBAM_031540__    739 ATATCGCAGCTGGAAGTGCTCGAAGATCGCGTTCGGGCGAGGAGAGAA--    786

BSNT_05174___    775 AGGACCAT-TTTCACGAGATA-CAAAAATGCGCTCGGTCACATAGAC-GG    821
                           || |||||| ||.|| |...|| ||||| ||..|||||..| ||
RBAM_031540__    787 ------ATCTTTCAC-AGGTATCGGGAA-GCGCT-GGAAACATATCCGGG    827

BSNT_05174___    822 CGTCCGCTTTATGCCGGAGTACGCAGCAGGCGTATCCAATCGCTGGCTCA    871
                     |.|||||.|.|||||||||...|.||.|...||.||.||.||||||||.|
RBAM_031540__    828 CATCCGCATGATGCCGGAGCTTGAAGGAACGGTTTCAAACCGCTGGCTGA    877

BSNT_05174___    872 CCACGCTCACACTTGATAACGGGCTCAGCCC---ATATGACGTAGTTCAA    918
                     |..|.||.||.|||||||||||..|.|..||   |.|.|.|||.|     
RBAM_031540__    878 CGGCTCTGACGCTTGATAACGGCGTGACGCCGGAAGAAGCCGTCG-----    922

BSNT_05174___    919 C--GTCTTGCTGAAGAAAACATTGAAGCCCGTCCGCTGTGGAAGCCGCTC    966
                     |  |||||||.|||.|.||||||||.|||||.|||||||||||.|||||.
RBAM_031540__    923 CCTGTCTTGCGGAACAGAACATTGAGGCCCGGCCGCTGTGGAAACCGCTG    972

BSNT_05174___    967 CATACCCAGCCGCTATTC----GATCCGGCTTTATTTTATTCTCA---TG   1009
                     |||||.||||||||.|||    ..||||    |.||||||.||||   .|
RBAM_031540__    973 CATACGCAGCCGCTTTTCTCATCTTCCG----TCTTTTATCCTCACAGCG   1018

BSNT_05174___   1010 AAGATACAGGAAGCG----TATGCGAAGATTTGTTCAAGCGAGGAATCTG   1055
                     ||.||     .||||    |.||.|||..||  ||||..||.||.|||||
RBAM_031540__   1019 AACAT-----GAGCGGGTCTCTGAGAACCTT--TTCAGTCGGGGTATCTG   1061

BSNT_05174___   1056 TCTCCCATCGGGGTCCAATATGAC----------AGAAGATGAGCAAGAC   1095
                     |||.||.||.|||||     ||||          ||     |||||..|.
RBAM_031540__   1062 TCTGCCGTCCGGGTC-----TGACTTGTCTTCTGAG-----GAGCAGCAG   1101

BSNT_05174___   1096 CGGGTCATTGAAGTGCTACTGCGCTTATTCCAAACTG------CCGA---   1136
                     ||.||||||||.|..||  |||||        |||||      .|||   
RBAM_031540__   1102 CGTGTCATTGACGCACT--TGCGC--------AACTGTTTGAAACGAAAG   1141

BSNT_05174___   1137 -GGTGAAGAAATGGACAGCAAGCATTCGATGA   1167
                      ||.|||.|.|||||||||...|||...||||
RBAM_031540__   1142 GGGAGAAAACATGGACAGCCGCCATGTTATGA   1173


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