Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05174 and RBAM_031540
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:39
# Commandline: needle
# -asequence dna-align/BSNT_05174___yvfE.1.9828.seq
# -bsequence dna-align/RBAM_031540___epsN.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05174___yvfE-RBAM_031540___epsN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05174___yvfE-RBAM_031540___epsN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05174___yvfE
# 2: RBAM_031540___epsN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1232
# Identity: 853/1232 (69.2%)
# Similarity: 853/1232 (69.2%)
# Gaps: 124/1232 (10.1%)
# Score: 2841.0
#
#
#=======================================
BSNT_05174___ 1 ATGCATAAAAAA-------ATCTACTTATCTCCCCCTCATATGAGCGGCA 43
||||| ||.||| ||.||.||.|||||.||||||||||||||.|
RBAM_031540__ 1 ATGCA-AACAAACAAACGGATTTATTTGTCTCCGCCTCATATGAGCGGAA 49
BSNT_05174___ 44 GGGAGCAGCACTATATTTCAGAAGCCTTTCGCTCAAACTGGATCGCGCCG 93
..||.|||.|.||.||..||||||||||.||.||.||.|||||.||.|||
RBAM_031540__ 50 AAGAACAGGAATACATCGCAGAAGCCTTCCGTTCCAATTGGATTGCCCCG 99
BSNT_05174___ 94 CTTGGGCCGCTCGTGAATTCATTTGAAGAACAGCTGGCAGAA----CGAG 139
||.||.||||||||.|||||.|||||||..|.|||.||.||| ||
RBAM_031540__ 100 CTCGGTCCGCTCGTCAATTCGTTTGAAGCGCGGCTCGCGGAATATGCG-- 147
BSNT_05174___ 140 TCGGTGT-AAAAGCAGCCGCTGCGGTCGGCTCAGGAACGGCGGCGATTCA 188
||.|| |||||| ||.||.||.||..||||.||||||||.||.||.||
RBAM_031540__ 148 --GGAGTGAAAAGC-GCGGCGGCCGTAAGCTCGGGAACGGCCGCCATCCA 194
BSNT_05174___ 189 TCTCGCCCTGCGTTTGCTTGAG---GTAAAAGAAGGTGACAGCGTGTTTT 235
|||.|||||||| |||||.| ||.|||.||||.|||...||.||||
RBAM_031540__ 195 TCTTGCCCTGCG---GCTTGCGGGTGTGAAAAAAGGAGACGTTGTATTTT 241
BSNT_05174___ 236 GCCAGTCCTTCACATTTGTAGCAACCGCCAATCCGATTTTATATGAAAAA 285
|.|..|||||.||.|||||.||.||.||.|||||||||.|.|||||..|.
RBAM_031540__ 242 GTCCTTCCTTTACGTTTGTCGCCACGGCGAATCCGATTGTGTATGAGCAG 291
BSNT_05174___ 286 GCGGTGCCCGTCTTTATTGATTCTGAGCCTGATACGTGGAATATGTCG-C 334
||.|.||||||.|||||||||||.||....||.||||||||||||||| |
RBAM_031540__ 292 GCTGAGCCCGTTTTTATTGATTCGGAATGGGAGACGTGGAATATGTCGCC 341
BSNT_05174___ 335 CGACAGCCCTTGAAAGAGCATTGGAGGAAGCGAAAAGAAACGGAACACTG 384
||| .||.||.||..|.||..||..|||.||.||..|...|||.|.|||.
RBAM_031540__ 342 CGA-TGCGCTGGAGCGGGCGCTGCGGGATGCAAAGCGGCGCGGCAGACTC 390
BSNT_05174___ 385 CCAAAAGCGGTTATTGCCGTCAATCTATATGGGCAGAGCGCGAAAATGGA 434
||.||||||||.||.|||||||||||.||.||.||.||||||||||||||
RBAM_031540__ 391 CCGAAAGCGGTGATCGCCGTCAATCTCTACGGCCAAAGCGCGAAAATGGA 440
BSNT_05174___ 435 TGAAATCGTAAGCCTGTGCGATGCATACGGAGTTCCTGTC--ATTGAGGA 482
||||.|..|.|||||.||.||.||||||||.|| ||||| |||||.||
RBAM_031540__ 441 TGAATTAATGAGCCTTTGTGACGCATACGGCGT--CTGTCTGATTGAAGA 488
BSNT_05174___ 483 CGCAGCCGAATCTCTCGGAACAGTCTATAAAGGGAAGCAAAGCGGAACAT 532
|||.|||||.||..|.|||.||...||||||||.|.|||.|||||.||.|
RBAM_031540__ 489 CGCTGCCGAGTCCTTAGGATCAACATATAAAGGCAGGCAGAGCGGCACGT 538
BSNT_05174___ 533 TCGGGCGCTTCGGCATTTTTTCATTTAACGGGAACAAAATCATTACCACA 582
||||.||.||||||||||.|||.||||||||.||||||||||||||.|||
RBAM_031540__ 539 TCGGCCGTTTCGGCATTTATTCCTTTAACGGCAACAAAATCATTACAACA 588
BSNT_05174___ 583 TCAGGGGGAGGGATGCTCGTTTCAAATGATGAAGCCGCAATTGAAAAAGC 632
||.||.||.||.||||||||.||..|.|||||||||||.|||||||||||
RBAM_031540__ 589 TCGGGAGGCGGCATGCTCGTGTCTGACGATGAAGCCGCGATTGAAAAAGC 638
BSNT_05174___ 633 AAGATTTCTCGCTTCGCAGGCACGAGAACCGGCTGTTCATTATCAGCACA 682
.||.|||||.||.||.|||||..||||..|.||.||||||||.|||||||
RBAM_031540__ 639 GAGGTTTCTTGCGTCCCAGGCGAGAGATGCCGCCGTTCATTACCAGCACA 688
BSNT_05174___ 683 GTCAAATTGGACATAATTACAGGCTGAGCAATATCTTAGCCGGCGTCGGC 732
|..|..|.||..||||.||||||||.|||||.||..|.||.|||||.||.
RBAM_031540__ 689 GCGAGCTCGGGTATAACTACAGGCTCAGCAACATTCTCGCGGGCGTGGGG 738
BSNT_05174___ 733 ATTGCCCAGCTTGAGGTGCTGGATGAGCGAGT--------GGAGACAAGA 774
||..|.|||||.||.|||||.||.||.||.|| |||||.||
RBAM_031540__ 739 ATATCGCAGCTGGAAGTGCTCGAAGATCGCGTTCGGGCGAGGAGAGAA-- 786
BSNT_05174___ 775 AGGACCAT-TTTCACGAGATA-CAAAAATGCGCTCGGTCACATAGAC-GG 821
|| |||||| ||.|| |...|| ||||| ||..|||||..| ||
RBAM_031540__ 787 ------ATCTTTCAC-AGGTATCGGGAA-GCGCT-GGAAACATATCCGGG 827
BSNT_05174___ 822 CGTCCGCTTTATGCCGGAGTACGCAGCAGGCGTATCCAATCGCTGGCTCA 871
|.|||||.|.|||||||||...|.||.|...||.||.||.||||||||.|
RBAM_031540__ 828 CATCCGCATGATGCCGGAGCTTGAAGGAACGGTTTCAAACCGCTGGCTGA 877
BSNT_05174___ 872 CCACGCTCACACTTGATAACGGGCTCAGCCC---ATATGACGTAGTTCAA 918
|..|.||.||.|||||||||||..|.|..|| |.|.|.|||.|
RBAM_031540__ 878 CGGCTCTGACGCTTGATAACGGCGTGACGCCGGAAGAAGCCGTCG----- 922
BSNT_05174___ 919 C--GTCTTGCTGAAGAAAACATTGAAGCCCGTCCGCTGTGGAAGCCGCTC 966
| |||||||.|||.|.||||||||.|||||.|||||||||||.|||||.
RBAM_031540__ 923 CCTGTCTTGCGGAACAGAACATTGAGGCCCGGCCGCTGTGGAAACCGCTG 972
BSNT_05174___ 967 CATACCCAGCCGCTATTC----GATCCGGCTTTATTTTATTCTCA---TG 1009
|||||.||||||||.||| ..|||| |.||||||.|||| .|
RBAM_031540__ 973 CATACGCAGCCGCTTTTCTCATCTTCCG----TCTTTTATCCTCACAGCG 1018
BSNT_05174___ 1010 AAGATACAGGAAGCG----TATGCGAAGATTTGTTCAAGCGAGGAATCTG 1055
||.|| .|||| |.||.|||..|| ||||..||.||.|||||
RBAM_031540__ 1019 AACAT-----GAGCGGGTCTCTGAGAACCTT--TTCAGTCGGGGTATCTG 1061
BSNT_05174___ 1056 TCTCCCATCGGGGTCCAATATGAC----------AGAAGATGAGCAAGAC 1095
|||.||.||.||||| |||| || |||||..|.
RBAM_031540__ 1062 TCTGCCGTCCGGGTC-----TGACTTGTCTTCTGAG-----GAGCAGCAG 1101
BSNT_05174___ 1096 CGGGTCATTGAAGTGCTACTGCGCTTATTCCAAACTG------CCGA--- 1136
||.||||||||.|..|| ||||| ||||| .|||
RBAM_031540__ 1102 CGTGTCATTGACGCACT--TGCGC--------AACTGTTTGAAACGAAAG 1141
BSNT_05174___ 1137 -GGTGAAGAAATGGACAGCAAGCATTCGATGA 1167
||.|||.|.|||||||||...|||...||||
RBAM_031540__ 1142 GGGAGAAAACATGGACAGCCGCCATGTTATGA 1173
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