Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05169 and RBAM_031500
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:39
# Commandline: needle
# -asequence dna-align/BSNT_05169___yvfH.1.9828.seq
# -bsequence dna-align/RBAM_031500___yvfH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05169___yvfH-RBAM_031500___yvfH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05169___yvfH-RBAM_031500___yvfH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05169___yvfH
# 2: RBAM_031500___yvfH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1723
# Identity: 1305/1723 (75.7%)
# Similarity: 1305/1723 (75.7%)
# Gaps: 77/1723 ( 4.5%)
# Score: 4866.0
#
#
#=======================================
BSNT_05169___ 1 ATGCAATGGACACAGGCATATACGCCTATAGGGGGAAATTTGCTATTATC 50
||||||||||||||||..||..|.|||.||||||||||||||||.|||||
RBAM_031500__ 1 ATGCAATGGACACAGGGGTACGCTCCTTTAGGGGGAAATTTGCTTTTATC 50
BSNT_05169___ 51 AGC-GCTTGCCGCACTTGTACCGATTATTTTCTTTTTTTGGGCACTCGCG 99
.|| ||||| |||.||.||.||||||||.||||||||||||||.||.|||
RBAM_031500__ 51 GGCAGCTTG-CGCGCTCGTGCCGATTATCTTCTTTTTTTGGGCGCTTGCG 99
BSNT_05169___ 100 ATTAAACGGATGAAGGGGTATACAGC-TGGCTTGGCCACATTGGGGATCG 148
.|.|||||||||||||||||.|..|| .||||| ||...|.|.|
RBAM_031500__ 100 GTGAAACGGATGAAGGGGTACATCGCGGGGCTT-------TTAACGTTAG 142
BSNT_05169___ 149 CC------CTTATCATTGCTGTATTGGTTTATCGG-ATGCCGGCGGAAAA 191
|| |||.|.||.||||||||.||||| ||| ||||||||||||||
RBAM_031500__ 143 CCGTTTCACTTTTAATCGCTGTATTTGTTTA-CGGCATGCCGGCGGAAAA 191
BSNT_05169___ 192 AGCGCTGATGTCCGCGACACAAGGAGCCGTATACGGATTGTTGCCGATCG 241
||||.||||||||||..|.||.|||||.||.|||||..||.|.|||||||
RBAM_031500__ 192 AGCGGTGATGTCCGCTTCTCAGGGAGCGGTGTACGGGCTGCTTCCGATCG 241
BSNT_05169___ 242 GCTGGATCATTGTGACGTCTGTTTTTTTGTATAAAATCACTGTGAAAACG 291
|||||||.||.||.||.||.||.|||.|||||||||||||.|||||||||
RBAM_031500__ 242 GCTGGATTATCGTCACATCGGTCTTTCTGTATAAAATCACCGTGAAAACG 291
BSNT_05169___ 292 GGACAGTTTGATATCATTCGCAGCTCTGTTCTCTCGATTACTGATGACCG 341
|||||||||||.||.||.||.||.||.||.|||||.|||||.||||||||
RBAM_031500__ 292 GGACAGTTTGAGATTATCCGGAGTTCGGTGCTCTCAATTACAGATGACCG 341
BSNT_05169___ 342 ACGGCTTCAAGCTCTCTTGATCGCTTTTTCATTCGGGGCTTTTTTAGAAG 391
.||..|.||.||.||..|.|||||.||||||||||||||.||||||||||
RBAM_031500__ 342 GCGTTTGCAGGCGCTGCTCATCGCCTTTTCATTCGGGGCGTTTTTAGAAG 391
BSNT_05169___ 392 GGGCAGCAGGCTTCGGAGCGCCGGTCGCCATTTCTGCCGCGCTGCTGGTC 441
|.||.||.||.|||||.||.||.|||||.||.||.|||||..||||.|||
RBAM_031500__ 392 GCGCCGCCGGTTTCGGCGCTCCCGTCGCGATCTCGGCCGCTTTGCTCGTC 441
BSNT_05169___ 442 GGTCTCGGCTTTAATCCTCTTTATGCTGCGGGGATCTGTTTGATCGCCAA 491
||.||.||.|||.|.||.||.|||||.|||||.||.||..||||.|||||
RBAM_031500__ 442 GGACTTGGTTTTCAGCCGCTGTATGCGGCGGGAATTTGCCTGATTGCCAA 491
BSNT_05169___ 492 TACGGCGCCGGTTGCCTTTGGGGCGATTGGGATTCCAATTACAGCCGTAG 541
|||||||||.||||||||.||.|||||.||.|||||.|||||.|||||.|
RBAM_031500__ 492 TACGGCGCCCGTTGCCTTCGGCGCGATCGGCATTCCGATTACCGCCGTCG 541
BSNT_05169___ 542 AAGGGCCGACAGGGATTCCGGCGATGGAGATTTCGCAAATGGTCGGGCGG 591
||||.|||||.|||||.|||||.|||||.|||||.|||||||||||.|||
RBAM_031500__ 542 AAGGTCCGACCGGGATACCGGCAATGGAAATTTCTCAAATGGTCGGCCGG 591
BSNT_05169___ 592 CAGCTGCCGTTTTTATCCGTATTTATTCCTCTTTATTTAATCATCATCAT 641
|||||.||||||||||||||.||||||||.||.||.||||||||..|.||
RBAM_031500__ 592 CAGCTTCCGTTTTTATCCGTCTTTATTCCGCTGTACTTAATCATTTTGAT 641
BSNT_05169___ 642 GAGCGGGTTCAGGAAAGCCTTGGAAATCTGGCCGGCGATTCTCGTATCCG 691
|||||||||.|..|||||.||.||..|.||||||||.|||||.||.||||
RBAM_031500__ 642 GAGCGGGTTTAAAAAAGCTTTTGAGGTATGGCCGGCCATTCTTGTTTCCG 691
BSNT_05169___ 692 GTGTTTCCTTTGCTGTTGTTCAATATCTC-AGTTCCAATTTTTTAGGGCC 740
|.||.||||||||.|..||.||.|| |.| ||.||.||||||||||||||
RBAM_031500__ 692 GCGTCTCCTTTGCGGCCGTGCAGTA-CGCAAGCTCGAATTTTTTAGGGCC 740
BSNT_05169___ 741 TGAGCTGCCCGATGTTTTGTCAGCTCTTGTTTCAATGGCTGCGCTTGCTG 790
||||||.||.|||||..||||.||.||||||||.|||||.|||||.||||
RBAM_031500__ 741 TGAGCTTCCGGATGTGCTGTCGGCGCTTGTTTCCATGGCCGCGCTCGCTG 790
BSNT_05169___ 791 TGTTTTTGAAATGGTGGAAGCCGAAAACAGCATTCCGGTTTGCCGGTGAA 840
||||||||||||..|||||.||||||||.||.||.||.||.||.|..|||
RBAM_031500__ 791 TGTTTTTGAAATTTTGGAAACCGAAAACGGCCTTTCGTTTCGCGGCAGAA 840
BSNT_05169___ 841 CAAGAGT------CGGCCGCCTCAATTGAAACGGCG-CGCACAAGTCCGG 883
|..||.| ||||||| |||...||.| ||..|||||.|||
RBAM_031500__ 841 CGGGAATCAGCAGCGGCCGC------TGACCGGGTGCCGATCAAGTACGG 884
BSNT_05169___ 884 CGGCGCCTGCATACAGCGGCGGACAGATTTTTAAGGCTTGGTCGCCATTT 933
.|||||| |||| |.|||||.||.|||||.||.||.
RBAM_031500__ 885 GGGCGCC-----------GCGG-----TGTTTAAAGCGTGGTCTCCTTTC 918
BSNT_05169___ 934 CTGCTGCTGACGGCGATGATTTCCGTATGGGGCATTCCATCTGTCAAATC 983
||.||.||||||||.|||||.|||||.|||||.|||||....||.||..|
RBAM_031500__ 919 CTTCTTCTGACGGCCATGATATCCGTCTGGGGGATTCCCGGCGTGAAGGC 968
BSNT_05169___ 984 TGCACTGACCGGGCATTATGAAGG-----CTCTGCGGCGTTCTTGAAGTG 1028
|||..|.|||||.|||||.||||| |..||.|||.||| .||
RBAM_031500__ 969 TGCCTTAACCGGTCATTACGAAGGAACGTCAATGTGGCTTTC-----CTG 1013
BSNT_05169___ 1029 GCTGAATGCTGTTGGAGAAAAACTGACTTT--TGCC-CCCGGTGTGCCTT 1075
|||||||||.|..||......|.||||.|| .||| ||| ||.||.|
RBAM_031500__ 1014 GCTGAATGCAGCCGGGCGTGCATTGACCTTCACGCCTCCC---GTCCCAT 1060
BSNT_05169___ 1076 TTTTGAACAATCAGATTGTCAATGCTGACGGTACGCCGATTGAGGCGGTT 1125
||.|.||..|.||||||.|..|.||.|||||.|||||||||||.||.||.
RBAM_031500__ 1061 TTGTAAATCAGCAGATTCTTCAGGCGGACGGCACGCCGATTGAAGCCGTG 1110
BSNT_05169___ 1126 TACAAGCTTGAGGTGCTTGGTTCGGCCGGCACCGCGATATTGATTGCCGC 1175
|||||.||||||.|..|.|||||.||.||.||.|||||..||||||||||
RBAM_031500__ 1111 TACAAACTTGAGCTTTTCGGTTCAGCGGGGACGGCGATTCTGATTGCCGC 1160
BSNT_05169___ 1176 AGTGCTGTCAAAGTTC-ATCACGGCGATTTCGTGGAAAGAC-TGGG--GA 1221
.||..|.||.|||||| ..|.|||| ||.|||||| ||||| |||| ||
RBAM_031500__ 1161 CGTCATCTCCAAGTTCGCCCTCGGC-ATGTCGTGG-AAGACATGGGGCGA 1208
BSNT_05169___ 1222 ACCGTTTTTAAAGAAACAGTCCAGGAATTGAAGCTTCCGATTTTGACCAT 1271
|.|| ||||.||||||.||..|||||||.|.|||||||.|..|||||||
RBAM_031500__ 1209 AGCG--TTTATAGAAACGGTGAAGGAATTAACGCTTCCGGTCGTGACCAT 1256
BSNT_05169___ 1272 CGCTTCTGTCGTTGGTTTTGCCTATGTCACCAACTCCTCGGGAATGAGCA 1321
.|.||||||.||.||.|||||.|||||.||.||..|.||.||.|||||||
RBAM_031500__ 1257 TGTTTCTGTTGTCGGCTTTGCTTATGTGACGAATGCTTCCGGCATGAGCA 1306
BSNT_05169___ 1322 CGACACTCGGGATGACACTCGCGCTGACAGGTTCGATGTTTACCTTCTTT 1371
||||||||||..|..|.||.||..||||.||..|||||||||||||.|||
RBAM_031500__ 1307 CGACACTCGGTCTTGCGCTTGCCATGACGGGCGCGATGTTTACCTTTTTT 1356
BSNT_05169___ 1372 TCGCCCGTCCTCGGCTGGCTCGGCGTCTTCATTACCGGCTCGGATACTTC 1421
|||||.||.|||||||||||||||||.||.|||||||||||.|||||.||
RBAM_031500__ 1357 TCGCCGGTGCTCGGCTGGCTCGGCGTATTTATTACCGGCTCTGATACGTC 1406
BSNT_05169___ 1422 CGCCAACCTGCTGTTCGGCAACCTGCAGAAAGTCACCGCATTATCAGTCG 1471
.||||||||..||||||||....||||.||.||.||.||..|.||.||||
RBAM_031500__ 1407 GGCCAACCTATTGTTCGGCGGATTGCAAAAGGTGACGGCGCTCTCTGTCG 1456
BSNT_05169___ 1472 GCATGGACCCCGTTCTGTCTGTGGCCGCCAATTCTTCAGGCGGTGTCACA 1521
|.||||||||.|||||.||.||.|||||||||||.||||||||||||||.
RBAM_031500__ 1457 GGATGGACCCGGTTCTCTCCGTTGCCGCCAATTCATCAGGCGGTGTCACC 1506
BSNT_05169___ 1522 GGAAAAATGATTTCGCCGCAGTCGATAGCGGTGGCGTGCGCTGCCGTAGG 1571
||||||||||||||.|||||.||.||.|||||.||.||.||.||.||.||
RBAM_031500__ 1507 GGAAAAATGATTTCTCCGCAATCCATTGCGGTTGCCTGTGCCGCTGTCGG 1556
BSNT_05169___ 1572 ACTCGCCGGAAAGGAGTCAGATCTTTTCCGCTTTACCATTAAACACAGTC 1621
.||.||.||.|||||..|.||.||||||||||||||.|||||.|||||||
RBAM_031500__ 1557 TCTGGCGGGCAAGGAAGCCGACCTTTTCCGCTTTACGATTAAGCACAGTC 1606
BSNT_05169___ 1622 TGTTTTTGCTGCTGCTCGTTTGTATCATCACCTTTTTGCAGCATCA--CA 1669
||||||||||.||||||||.|||.|.||.||.|||||.|||||||| ..
RBAM_031500__ 1607 TGTTTTTGCTTCTGCTCGTCTGTCTTATTACATTTTTACAGCATCATCTG 1656
BSNT_05169___ 1670 TATTCAGCTGGATGATTCCTTAA 1692
|.|||| ||||||||.||.|||
RBAM_031500__ 1657 TTTTCA--TGGATGATCCCGTAA 1677
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Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.