Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06144 and RBAM_031440
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:37
# Commandline: needle
# -asequence dna-align/BSNT_06144___gntP.1.9828.seq
# -bsequence dna-align/RBAM_031440___gntP.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06144___gntP-RBAM_031440___gntP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06144___gntP-RBAM_031440___gntP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06144___gntP
# 2: RBAM_031440___gntP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1550
# Identity: 851/1550 (54.9%)
# Similarity: 851/1550 (54.9%)
# Gaps: 424/1550 (27.4%)
# Score: 1907.5
#
#
#=======================================
BSNT_06144___ 1 ATG---CCGTTAATCATCGTTGCACTTGGGATCTTA--GCATTACTATTT 45
||| |.|||.||..||.|||| .|.|.||| |..|||||.||.
RBAM_031440__ 1 ATGTTACTGTTTATTGTCATTGC-----CGCTATTATCGTTTTACTCTTA 45
BSNT_06144___ 46 CTGATTATGG--GCTTAAAATTAAACACATTTAT---------------T 78
.||||||.|| ||| ||||||||..|.||||| .
RBAM_031440__ 46 TTGATTACGGTCGCT--AAATTAAATCCGTTTATCAGTCTTTTGATTACA 93
BSNT_06144___ 79 TCCCTGCTGGTCGTATCGTTCGGCGTGGC-ACTGGCACTCGGGA---TGC 124
|||.|.||.|||| ||| |.|| ||.|||| .|| |||
RBAM_031440__ 94 TCCATCCTTGTCG----GTT-----TCGCAACGGGCA----TGAATCTGC 130
BSNT_06144___ 125 CGTTCGATAAAGTTGTCAGCTCCATCGAAGCAGGAATAGGGGGGACTCTT 174
|| ||.| ||.|| ||| ||| |.|||.|..||| ||.
RBAM_031440__ 131 CG---GACA---TTATC-GCT---TCG----ATGAAAACCGGG----CTC 162
BSNT_06144___ 175 GGCCACA------------TCGCGCTCATCTTCGGACTCGGTGCGATGCT 212
|||.|.| |.|||.||.|..|.|..||||||.|||||||
RBAM_031440__ 163 GGCAATACGCTGTCGCTGCTTGCGATCGTGCTGGCCCTCGGTACGATGCT 212
BSNT_06144___ 213 GGGCAAGCTGATCGCGGATTCAGGAGGCGCACAGCGCATTGC-------- 254
.||.||..||||.||.||.|||||.||.||..||||.||.||
RBAM_031440__ 213 CGGAAAAATGATGGCTGAATCAGGCGGTGCGGAGCGTATCGCCCACACCC 262
BSNT_06144___ 255 -GAT--GACGC-TCGTCAACAAATTCGGTGAGAAAAATATTCAATGGGCC 300
||| |.||| |||.|||.| ||||| .|.||.|||| |
RBAM_031440__ 263 TGATCGGCCGCTTCGGCAAAA---------AGAAA---GTGCATTGGG-C 299
BSNT_06144___ 301 GTTGTCATTGC---CTCATTTATTATTGGGATTGCGTTATTTTTTGAAGT 347
|.|| ||.|| |.|.||||||.|.||.||..||.|.|||||..|.||
RBAM_031440__ 300 GATG--ATGGCCGTCGCTTTTATTGTCGGCATCCCGGTCTTTTTCCAGGT 347
BSNT_06144___ 348 AGGACTGGTTCTATTAATTCCGATTGTCTTTGCGATTTCAAGAGAATTGA 397
.||..|.||.||..|..|.|||.||.|.|||.|||||.| .|||||
RBAM_031440__ 348 CGGCTTCGTCCTGCTCGTGCCGCTTTTGTTTACGATTGC-----GATTGA 392
BSNT_06144___ 398 A-----GATTTCTATT--TTATTTC--TCGGAATCCCGATGGTCGCGGCA 438
| |.|||| ||| |.| | |||||||.|||.|..|.||||.|
RBAM_031440__ 393 AACCGGGGTTTC-ATTAGTGA---CGATCGGAATTCCGCTCCTTGCGGGA 438
BSNT_06144___ 439 CTATCCGTCACACACGGTTTCCTGCCGCCGCACCCGGGACCTACGGCGAT 488
||.||||||...|||||.||..|.|||||.||||||| |||||||
RBAM_031440__ 439 CTTTCCGTCGTGCACGGATTGGTTCCGCCCCACCCGG------CGGCGAT 482
BSNT_06144___ 489 CGC------CGGTGAGTATGGCGCAAACATTGGAGAAGTGCTGCTGTACG 532
.|| |||....|||..|||.||..|.|||.||..|.|..|||
RBAM_031440__ 483 GGCGGCTGTCGGCATTTATCACGCCAATGTCGGAAAAACGATTTTGT--- 529
BSNT_06144___ 533 GCTTT-----ATCGTTGCTGTTCCGACAGTGC--TCATTGCAGGGCCGTT 575
||| |||||||...||||||| ||| ||||.||.||||||
RBAM_031440__ 530 --TTTCTTTAATCGTTGGGATTCCGAC--TGCCATCATCGCGGGGCCG-- 573
BSNT_06144___ 576 ATTTAC---AAA-------GTTCGCG----AAAAAAATCGTTCCTGCATC 611
.||||| ||| ||..||| .|.|||..||||||.|.|..
RBAM_031440__ 574 CTTTACGGAAAATGGATTGGTAAGCGCATTCACAAACCCGTTCCCGAACT 623
BSNT_06144___ 612 ATTTGCGAAAAACGGCAA--TATTGCATCACTCGGCACACAAAAAACGTT 659
.|| |||||| .||| |||||.| ||| .|..|||||||
RBAM_031440__ 624 GTT---GAAAAA--ACAATTTATTGAA-----CGG--AATGAAAAACG-- 659
BSNT_06144___ 660 TAACCTTGAAGAAACACCCGGCTTTGG--AAT-CAGTGTCTTTACCGCAA 706
.||.||| ||||..||.| ||| ||.|| |||||...|.
RBAM_031440__ 660 CAAGCTT----------CCGGGATTCGCAAATACATTG--TTTACGATAT 697
BSNT_06144___ 707 TGCTCCCGATTATCATCATGTCGGTCGCGACCATTATCGACCT---GCTT 753
||.|.|||.|.|.|.|.|||....|.||.||..||..|||..| ||||
RBAM_031440__ 698 TGGTACCGGTGACCCTGATGCTTATGGCAACGCTTGCCGAAATTGCGCTT 747
BSNT_06144___ 754 CAAGAAACAATCGGGTTTGCA--------GATAACGGAGTTTTAGCTTTT 795
|..||||.|| ||| || ||| ||||| ..|||
RBAM_031440__ 748 CCGGAAAAAA--------GCACGCTCTATGA-AAC----TTTTA-AATTT 783
BSNT_06144___ 796 ATCAG------------------ATTGATTGGAAACGCATCG----ACTG 823
|||.| .||||| |||..|| |||.
RBAM_031440__ 784 ATCGGCGACCCTGTCACGGCGCTTTTGAT------CGCCACGGTTTACTC 827
BSNT_06144___ 824 CTATGATTATTTCGTTATTGGTCGCAGTCTATACAATGGGCAT---CAAG 870
| |.||||....||||| .|.||| || ||||.| | ||
RBAM_031440__ 828 C------TTTTTCAGCCTTGGT----TTTTAT-CA--GGGCTTTGAC-AG 863
BSNT_06144___ 871 CGCAA-CATTCCAGTCAAAACCGTGATGGATTCTTGTTCA------ACTG 913
.|.|| |||| |.|||| |||| ||||
RBAM_031440__ 864 AGAAAGCATT----TTAAAA----------------TTCAGCAATGACTG 893
BSNT_06144___ 914 --------CCATTTCACAAATCGGCATGATGCTTTTGATCATCGGAGGAG 955
|.|||.| .|| |||..|||||.|| |||||||..|
RBAM_031440__ 894 TCTGGGACCGATTGC----TTC--CATTCTGCTTGTG---ATCGGAGCCG 934
BSNT_06144___ 956 GCGGCGCCTTCAAACAA-GTGCTGA-----TCAACGGCGGTGTCGGCGAT 999
|||||| |||..||||| ||.|||| ||| ||.||||||
RBAM_031440__ 935 GCGGCG-CTTTTAACAACGTCCTGATTGATTCA-----GGCGTCGGC--- 975
BSNT_06144___ 1000 TACGTA----GCAGACTT--------ATTCAAAGGAACGGCATTATCGCC 1037
||||| ||.|||.| |.|||| || ||.||.||
RBAM_031440__ 976 -ACGTATATCGCTGACATGGCGAAGCACTCAA-------GC-TTCTCTCC 1016
BSNT_06144___ 1038 AATCATTCT----GGCATGGCTCATCGCGGCGATCCTGCGCATTTCTC-- 1081
|.|||| .|| |||...|||||||||.||.|.|| |.||.|
RBAM_031440__ 1017 ---CGTTCTTTTAAGC-TGGACGATCGCGGCGGTCATCCG--TGTCGCCA 1060
BSNT_06144___ 1082 TAGGATCAGCGACTGTTGCCGCACTAAGCACAACAG-GTCTGGTCATCCC 1130
.|||.|||||||||||.||| |..|..||.| |.|.|| ||| .
RBAM_031440__ 1061 CAGGTTCAGCGACTGTCGCC------ATGATGACGGCGGCCGG-CAT--T 1101
BSNT_06144___ 1131 GTT------ATTGGGCCATTCTG--ATGTTAACCTGGCGTTAG------- 1165
||| |||| || |||| ||| ||.|||||.||
RBAM_031440__ 1102 GTTGCACCGATTG---CA-TCTGTCATG----CCGGGCGTCAGCAGTGAG 1143
BSNT_06144___ 1166 ----TCGTGCTCGCAACAGGCGCCGGAAGTGTCATCGCT-TCACACGTCA 1210
||||..|.|||||.||.||.||...|.|.|| .|| |||||.||||
RBAM_031440__ 1144 CTTCTCGTATTGGCAACGGGAGCGGGCTCTTTGAT-TCTGTCACATGTCA 1192
BSNT_06144___ 1211 ATGACGCCGGCTTCTGGATGTTCAAGGAATACTTCGGATTAAGCATGAAA 1260
|||||.||||.||||||.|..|.||.||.||.||||||.|.|...|.|||
RBAM_031440__ 1193 ATGACTCCGGTTTCTGGCTCATTAAAGAGTATTTCGGAATGACGGTCAAA 1242
BSNT_06144___ 1261 GAAACATTCGCCACATGGACATTGCTGGAAACCATTATTTCCGT---TGC 1307
|||||||||...||||||||...|.|||||||.||||||||.|| |||
RBAM_031440__ 1243 GAAACATTCCTGACATGGACGGCGATGGAAACGATTATTTCTGTCAGTGC 1292
BSNT_06144___ 1308 TGGA-CTGGGATTCATTTTAT--TG----TTAA---GTTTAGTTGTATGA 1347
|| ||| |||||| || |||| ||||| |||.|
RBAM_031440__ 1293 --GATCTG-------TTTTATCATGATCATTAACGCGTTTA----TATAA 1329
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