Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05138 and RBAM_031330
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:37
# Commandline: needle
# -asequence dna-align/BSNT_05138___araR.1.9828.seq
# -bsequence dna-align/RBAM_031330___araR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05138___araR-RBAM_031330___araR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05138___araR-RBAM_031330___araR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05138___araR
# 2: RBAM_031330___araR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1125
# Identity: 859/1125 (76.4%)
# Similarity: 859/1125 (76.4%)
# Gaps: 72/1125 ( 6.4%)
# Score: 3274.0
#
#
#=======================================
BSNT_05138___ 1 ATGTTACCAAAATACGCGCAAGTAAAAGAAGAAATCAGTTCATGGATTAA 50
|||.||||.|||||.||.|||||||||||||||||..||||||||.|.||
RBAM_031330__ 1 ATGCTACCGAAATATGCTCAAGTAAAAGAAGAAATTTGTTCATGGCTGAA 50
BSNT_05138___ 51 TCAAGGCAAAATACTGCCCGATCAAAAAATCCCTACCGAAAACGAATTAA 100
||||||.|||||||.|||.||..||||..|.|||||.|||||.||..|.|
RBAM_031330__ 51 TCAAGGAAAAATACAGCCGGACGAAAAGCTGCCTACGGAAAATGAGCTGA 100
BSNT_05138___ 101 TGCAGCAATTCGGCGTCAGCCGGCATACCATCCGCAAAGCGATCGGAGAC 150
|||||||.|||||.||||||||.|||||||||.|.||.|||||||||||.
RBAM_031330__ 101 TGCAGCAGTTCGGTGTCAGCCGCCATACCATCAGAAAGGCGATCGGAGAT 150
BSNT_05138___ 151 CTCGTATCACAAGGTCTGCTGTACAGCGTGCAAGGCGGAGGCACCTTTGT 200
.|.||.||.|||||.||||||||||||||.||.|||||.|||||||||||
RBAM_031330__ 151 TTGGTCTCGCAAGGGCTGCTGTACAGCGTTCAGGGCGGGGGCACCTTTGT 200
BSNT_05138___ 201 CGCTTCACGCTCTGCTAAGTCAGCGCTGCATTCCAATAAAACGATCGGTG 250
||||||||||.|.||.||.|||||..|||||||.||.|||||||||||.|
RBAM_031330__ 201 CGCTTCACGCACGGCGAAATCAGCCATGCATTCAAACAAAACGATCGGCG 250
BSNT_05138___ 251 TTTTGACAACCTACATATCAGACTATATTTTCCCGAGCATCATCAGAGGA 300
|..|.|||||.|||||||||||||||||||||||||||||||||||.|||
RBAM_031330__ 251 TCATTACAACGTACATATCAGACTATATTTTCCCGAGCATCATCAGGGGA 300
BSNT_05138___ 301 ATCGAGTCCTATTTAAGCGAGCAGGGGTATTCTATGCTTTTGACAAGCAC 350
|||||.||.|||||||||||.|||||.|||||.|||||..||||.|||||
RBAM_031330__ 301 ATCGAATCTTATTTAAGCGAACAGGGCTATTCCATGCTGCTGACGAGCAC 350
BSNT_05138___ 351 AAACAACAACCCGGACAACGAAAGAAGA-------GGCTTAGAAAACCTG 393
.|||||||| .||| ||||| .|| |||.|.|||||||||
RBAM_031330__ 351 CAACAACAA----TACA--GAAAG-TGAGCGGCGCGGCCTTGAAAACCTG 393
BSNT_05138___ 394 CTGTCCCAGCATATTGACGGACTCATCGTAGAACCGACAAAAAGCGCCCT 443
||||||.|..||||.|||||.||.||.||.||.||.||.||||||||.||
RBAM_031330__ 394 CTGTCCAAAAATATAGACGGGCTGATTGTCGAGCCTACGAAAAGCGCGCT 443
BSNT_05138___ 444 TCAAACCCCAAACATCGGCTATTATCTGAACTTGGAAAAAAACGGCATTC 493
.||.||.||.|||||||||||.|||||.||..||||.|||||||||||||
RBAM_031330__ 444 GCAGACGCCCAACATCGGCTACTATCTCAATCTGGAGAAAAACGGCATTC 493
BSNT_05138___ 494 CTTTTGCGATGATTAACGCGTCATATGCCGAGCTTGCCGCGCCGAGTTTT 543
|.|||||.|||||||||||.||.|||||.|||||.|||||.||.||.|||
RBAM_031330__ 494 CGTTTGCCATGATTAACGCCTCTTATGCGGAGCTGGCCGCACCAAGCTTT 543
BSNT_05138___ 544 ACCTTGGATGATGTGAAAGGCGGGATGATGGCGGCGGAGCATTTGC---- 589
.||.|..|||||||.||||||||.|||||||| ||||
RBAM_031330__ 544 TCCGTCAATGATGTCAAAGGCGGCATGATGGC----------TTGCGAAT 583
BSNT_05138___ 590 ------TTTCTCTCGGCCACACGCATATGATGGGTATTTTTAAAGCTGAT 633
|.||.||||||||||||||.||.|||||.||.||||||||.|||
RBAM_031330__ 584 ACGTCATGTCCCTCGGCCACACGCACATTATGGGAATCTTTAAAGCGGAT 633
BSNT_05138___ 634 GACACACAAGGCGTGAAACGGATGAACGGATTTATACAGGCGCACCGGGA 683
|||||.||.|||||.||||||||||||||.|.|.|.||||||||.|||||
RBAM_031330__ 634 GACACGCAGGGCGTCAAACGGATGAACGGCTATCTGCAGGCGCATCGGGA 683
BSNT_05138___ 684 GCGTGAGTTGTTTCCTTCTCCGGATATGATCGTGACATTTACAACGGAAG 733
|||.|.|.|.||.||.||||||||.||||||||.||.|..|||||.||||
RBAM_031330__ 684 GCGCGGGATTTTCCCGTCTCCGGACATGATCGTCACCTACACAACTGAAG 733
BSNT_05138___ 734 AAAAAGAATCAAAACTTCTGGAGAAAGTAAAAGC-CACACTGGAGAAAAA 782
||||||||.|....|||||..|.|||.| .|||| .||.||.|||.||||
RBAM_031330__ 734 AAAAAGAAACCGTGCTTCTCCAAAAAAT-TAAGCATACCCTTGAGCAAAA 782
BSNT_05138___ 783 CAGC-AAGCACATGCCGACAGCCATTCTTTGTTATAACGATGAAATTGCG 831
|||| ||.|||| .|||||.|||||||||||.||.||.||.|||||||||
RBAM_031330__ 783 CAGCGAATCACA-CCCGACGGCCATTCTTTGCTACAATGACGAAATTGCG 831
BSNT_05138___ 832 CTGAAGGTGATTGATATGCTGAGGGAGATGGATC---TTAAA-GTGCCGG 877
||||||..||||.||.|.||.||||| || || ||||| |||||.|
RBAM_031330__ 832 CTGAAGACGATTAATCTTCTCAGGGA-AT---TCGGGTTAAAGGTGCCTG 877
BSNT_05138___ 878 AGGA--TAT--GTCTATTGTCGGG-TACGATGATTCACATTTCGCCCAAA 922
|.|| ||| ||| || ||| ||.||.|||||||||||||||||.|
RBAM_031330__ 878 ATGACGTATCGGTC-AT----GGGCTATGACGATTCACATTTCGCCCAGA 922
BSNT_05138___ 923 TCTCAGAAGTGAAACTAACCTCTGTCAAACATCCGAAATCAGTGCTTGGA 972
|.||.||.|||||.||.|||||||||||.|||||||||||..|..|.||.
RBAM_031330__ 923 TTTCCGAGGTGAAGCTCACCTCTGTCAAGCATCCGAAATCCATTATGGGG 972
BSNT_05138___ 973 AAAGCAGCCGCCAAATATGTCATTGACTGCTTAGAGCATAAAAAGCCGAA 1022
|||||.||.||.|||||.|||||.||||||||||||||||||||.|||||
RBAM_031330__ 973 AAAGCGGCGGCAAAATACGTCATCGACTGCTTAGAGCATAAAAAACCGAA 1022
BSNT_05138___ 1023 GCAAGAGGATGTCATATTTGAGCCTGAGTTGATCATTCG----CCAGTCC 1068
|.|.||.||.|||.|.|.|||.||.||..|..||||.|| .|||||
RBAM_031330__ 1023 GAAGGATGACGTCGTGTATGAACCGGAACTCGTCATCCGGAATTCAGTC- 1071
BSNT_05138___ 1069 GCACGAAAACTGAAT----GAATAA 1089
||..|.|| ||||||
RBAM_031330__ 1072 -------AAGCGGATCGGCGAATAA 1089
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