Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05134 and RBAM_031300

See Amino acid alignment / Visit BSNT_05134 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:37
# Commandline: needle
#    -asequence dna-align/BSNT_05134___gapA.1.9828.seq
#    -bsequence dna-align/RBAM_031300___gapA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05134___gapA-RBAM_031300___gapA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05134___gapA-RBAM_031300___gapA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05134___gapA
# 2: RBAM_031300___gapA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1008
# Identity:     960/1008 (95.2%)
# Similarity:   960/1008 (95.2%)
# Gaps:           0/1008 ( 0.0%)
# Score: 4608.0
# 
#
#=======================================

BSNT_05134___      1 ATGGCAGTAAAAGTCGGTATTAACGGTTTTGGTCGTATTGGACGTAACGT     50
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_031300__      1 ATGGCAGTAAAAGTCGGTATTAACGGTTTTGGTCGTATTGGACGTAACGT     50

BSNT_05134___     51 ATTCCGCGCAGCATTAAACAATCCTGAAGTTGAGGTAGTAGCGGTTAACG    100
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_031300__     51 ATTCCGCGCAGCATTAAACAATCCTGAAGTTGAGGTAGTAGCGGTTAACG    100

BSNT_05134___    101 ATTTAACAGATGCTAACATGCTGGCTCACCTTTTACAATATGATTCTGTA    150
                     ||||||||||.|||||||||||.|||||.|||||||||||||||||.|||
RBAM_031300__    101 ATTTAACAGACGCTAACATGCTTGCTCATCTTTTACAATATGATTCCGTA    150

BSNT_05134___    151 CACGGAAAATTAGACGCTGAAGTTTCAGTTGACGGTAACAACCTTGTTGT    200
                     ||||||||||||||.||.||||||..|||||||||.|.||||||||||||
RBAM_031300__    151 CACGGAAAATTAGATGCAGAAGTTAAAGTTGACGGCAGCAACCTTGTTGT    200

BSNT_05134___    201 TAACGGCAAAACAATTGAAGTTTCTGCAGAACGCGATCCTGCTAAACTTA    250
                     |||||||||||||||.|||||||||||.||.|||||||||||.|||||.|
RBAM_031300__    201 TAACGGCAAAACAATCGAAGTTTCTGCTGAGCGCGATCCTGCGAAACTCA    250

BSNT_05134___    251 GCTGGGGCAAACAAGGCGTTGAAATCGTAGTTGAATCTACTGGTTTCTTC    300
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_031300__    251 GCTGGGGCAAACAAGGCGTTGAAATCGTAGTTGAATCTACTGGTTTCTTC    300

BSNT_05134___    301 ACAAAACGCGCAGACGCTGCGAAACACTTAGAAGCTGGCGCGAAAAAAGT    350
                     |||||||||||||||||||||||||||||||||||.||||||||||||||
RBAM_031300__    301 ACAAAACGCGCAGACGCTGCGAAACACTTAGAAGCAGGCGCGAAAAAAGT    350

BSNT_05134___    351 AATCATCTCTGCTCCTGCTAACGAAGAAGATATCACAATCGTTATGGGTG    400
                     .|||||||||||.|||||||||||||||||||||||||||||||||||||
RBAM_031300__    351 TATCATCTCTGCACCTGCTAACGAAGAAGATATCACAATCGTTATGGGTG    400

BSNT_05134___    401 TTAACGAAGATAAATACGATGCGGCTAACCACGATGTTATCTCTAACGCA    450
                     ||||||||||.|||||||||||.|||||||||.|||||||||||||||||
RBAM_031300__    401 TTAACGAAGACAAATACGATGCAGCTAACCACCATGTTATCTCTAACGCA    450

BSNT_05134___    451 TCTTGCACAACAAACTGCCTTGCGCCGTTTGCAAAAGTACTTAACGATAA    500
                     |||||||||||||||||||||||||||||||||||||||||||||||.||
RBAM_031300__    451 TCTTGCACAACAAACTGCCTTGCGCCGTTTGCAAAAGTACTTAACGACAA    500

BSNT_05134___    501 ATTCGGCATCAAACGCGGTATGATGACAACTGTTCACTCTTACACAAACG    550
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_031300__    501 ATTCGGCATCAAACGCGGTATGATGACAACTGTTCACTCTTACACAAACG    550

BSNT_05134___    551 ATCAGCAAATCCTTGATCTTCCGCACAAAGACTACCGTCGTGCGCGTGCA    600
                     ||||||||||.|||||||||||||||||||||||||||||||||||||||
RBAM_031300__    551 ATCAGCAAATTCTTGATCTTCCGCACAAAGACTACCGTCGTGCGCGTGCA    600

BSNT_05134___    601 GCAGCTGAAAACATCATCCCTACATCAACTGGTGCTGCTAAAGCAGTTTC    650
                     |||||||||||||||||.||||||||||||||||||||||||||||||||
RBAM_031300__    601 GCAGCTGAAAACATCATTCCTACATCAACTGGTGCTGCTAAAGCAGTTTC    650

BSNT_05134___    651 TCTAGTTCTTCCTGAACTAAAAGGCAAACTGAACGGTGGAGCAATGCGTG    700
                     .||.||||||||||||||.|||||||||||||||||.|||||.|||||||
RBAM_031300__    651 CCTTGTTCTTCCTGAACTGAAAGGCAAACTGAACGGCGGAGCTATGCGTG    700

BSNT_05134___    701 TTCCAACTCCAAACGTTTCTCTAGTTGACTTGGTTGCTGAACTGAACCAA    750
                     |.||.|||||||||||||||||.||||||.|.|||||||||||||||.||
RBAM_031300__    701 TGCCGACTCCAAACGTTTCTCTTGTTGACCTAGTTGCTGAACTGAACAAA    750

BSNT_05134___    751 GAAGTAACAGCTGAAGAAGTAAACGCAGCTCTTAAAGAAGCGGCTGAAGG    800
                     ||.|||||.||||||||.||||||||||||||||||||||||||||||||
RBAM_031300__    751 GACGTAACGGCTGAAGACGTAAACGCAGCTCTTAAAGAAGCGGCTGAAGG    800

BSNT_05134___    801 CGACCTTAAAGGAATCCTTGGCTACAGCGAAGAGCCATTAGTTTCTGGCG    850
                     |||.||||||||||||||||||||||||||||||||||||||.||.||.|
RBAM_031300__    801 CGATCTTAAAGGAATCCTTGGCTACAGCGAAGAGCCATTAGTATCCGGAG    850

BSNT_05134___    851 ACTACAACGGAAACAAAAACTCTTCTACAATCGATGCTCTTTCTACAATG    900
                     ||||||||||.||....|||||||||||||||||||||||||||||||||
RBAM_031300__    851 ACTACAACGGCAATGCTAACTCTTCTACAATCGATGCTCTTTCTACAATG    900

BSNT_05134___    901 GTTATGGAAGGCAGCATGGTAAAAGTAATCTCTTGGTACGATAACGAAAG    950
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_031300__    901 GTTATGGAAGGCAGCATGGTAAAAGTAATCTCTTGGTACGATAACGAAAG    950

BSNT_05134___    951 CGGCTACTCTAACCGCGTTGTTGACCTTGCAGCTTACATCGCAAAAAAAG   1000
                     ||||||||||||||||||||||||||||||||||||||||||||||.|||
RBAM_031300__    951 CGGCTACTCTAACCGCGTTGTTGACCTTGCAGCTTACATCGCAAAACAAG   1000

BSNT_05134___   1001 GTCTTTAA   1008
                     ||||||||
RBAM_031300__   1001 GTCTTTAA   1008


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05134 and RBAM_031300

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
