Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05117 and RBAM_031100
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:35
# Commandline: needle
# -asequence dna-align/BSNT_05117___opuCA.1.9828.seq
# -bsequence dna-align/RBAM_031100___opuCA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05117___opuCA-RBAM_031100___opuCA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05117___opuCA-RBAM_031100___opuCA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05117___opuCA
# 2: RBAM_031100___opuCA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1148
# Identity: 956/1148 (83.3%)
# Similarity: 956/1148 (83.3%)
# Gaps: 13/1148 ( 1.1%)
# Score: 3991.0
#
#
#=======================================
BSNT_05117___ 1 TTGCTGAAATTGGAACAAGTGTCAAAAGTATATAAAGGCGGCAAAAAAGC 50
|||||||.|||.|||.|.||.||||||||.|||||||||||.||||||||
RBAM_031100__ 1 TTGCTGAGATTAGAAAATGTATCAAAAGTCTATAAAGGCGGAAAAAAAGC 50
BSNT_05117___ 51 TGTGAACAGCATTGATTTAGATATTGCCAAAGGTGAATTTATCTGTTTTA 100
|||.|||||||||||||||.||||.|..|||||.||.|||||.|||||||
RBAM_031100__ 51 TGTCAACAGCATTGATTTAAATATCGAAAAAGGCGAGTTTATTTGTTTTA 100
BSNT_05117___ 101 TCGGCCCGAGCGGCTGCGGAAAAACGACGACGATGAAGATGATCAACAGA 150
||||.||||||||||||||||||||||||||||||||.|||||.||||||
RBAM_031100__ 101 TCGGGCCGAGCGGCTGCGGAAAAACGACGACGATGAAAATGATTAACAGA 150
BSNT_05117___ 151 CTGATAGAACCATCGTCTGGAAGGATCTTTATCGACGGAGAAAATATTAT 200
|||||.||.||.||.||.||||.|||.||||||||.||.|||||.|||||
RBAM_031100__ 151 CTGATTGAGCCGTCATCCGGAAAGATTTTTATCGATGGCGAAAACATTAT 200
BSNT_05117___ 201 GGAACAGGACCCGGTTGAGCTGAGGAGAAAAATCGGCTATGTGATTCAGC 250
|||.|||||||||||.||||||||..|.|||||||||||.||.|||||||
RBAM_031100__ 201 GGAGCAGGACCCGGTGGAGCTGAGACGGAAAATCGGCTACGTCATTCAGC 250
BSNT_05117___ 251 AGATTGGTTTGTTCCCCCATATGACCATCCAGCAGAACATCTCACTCGTA 300
||||.||..|.|||||.|||||||||||.|||||||||||.||.|||||.
RBAM_031100__ 251 AGATCGGACTTTTCCCTCATATGACCATTCAGCAGAACATTTCCCTCGTG 300
BSNT_05117___ 301 CCAAAGCTGCTGAAATGGCCTGAGGAAAAGCGGAAAGAACGGGCGCGCGA 350
||.||.||||||||||||||.||..||||||||||.|||||||||||.||
RBAM_031100__ 301 CCGAAACTGCTGAAATGGCCGGAACAAAAGCGGAAGGAACGGGCGCGGGA 350
BSNT_05117___ 351 GCTGTTAAAGCTTGTGGATATGGGCCCGGAGTATTTAGACCGTTATCCGT 400
|||.||.|||||.||.||||||||||||||.|||||||||||.|||||..
RBAM_031100__ 351 GCTTTTGAAGCTCGTCGATATGGGCCCGGAATATTTAGACCGCTATCCTC 400
BSNT_05117___ 401 ATGAGCTCAGCGGCGGACAGCAGCAGAGAATCGGCGTGCTGCGCGCCCTG 450
|.|||||.|||||.|||||||||||||||||||||||||||||||||||.
RBAM_031100__ 401 ACGAGCTGAGCGGGGGACAGCAGCAGAGAATCGGCGTGCTGCGCGCCCTT 450
BSNT_05117___ 451 GCAGCGGAACCCCCTCTCATTTTAATGGATGAACCGTTCGGAGCGCTTGA 500
|||||||||||.||.||.|||.|.||||||||||||||||||||||||||
RBAM_031100__ 451 GCAGCGGAACCTCCCCTTATTCTCATGGATGAACCGTTCGGAGCGCTTGA 500
BSNT_05117___ 501 TCCGATTACGCGTGATTCCCTTCAGGAAGAATTCAAAAAACTGCAGAGAA 550
||||||||||||.||||||||||||||||||||||||||||||||.||||
RBAM_031100__ 501 TCCGATTACGCGGGATTCCCTTCAGGAAGAATTCAAAAAACTGCAAAGAA 550
BSNT_05117___ 551 CCTTAAACAAAACGATTGTGTTTGTAACCCACGATATGGATGAAGCGATT 600
|.||.||.||||||||||||||||||||||||||||||||||||||.|||
RBAM_031100__ 551 CATTGAATAAAACGATTGTGTTTGTAACCCACGATATGGATGAAGCTATT 600
BSNT_05117___ 601 AAGCTTGCTGACAGGATTGTGATATTAAAAGCGGGAGAAATCGTTCAAGT 650
|||||.||||||.||||.||.||.||||||||||||||.||||||||.|.
RBAM_031100__ 601 AAGCTGGCTGACCGGATCGTCATTTTAAAAGCGGGAGAGATCGTTCAGGC 650
BSNT_05117___ 651 CGGCACACCTGATGAGATTCTTCGAAACCCGGCAAATGAGTTTGTTGAAG 700
||||||.||||||||.|||||.||.||.|||||.|||||||||||.||||
RBAM_031100__ 651 CGGCACTCCTGATGACATTCTCCGGAATCCGGCTAATGAGTTTGTCGAAG 700
BSNT_05117___ 701 AATTTATCGGGAAAGAGCGCCTGATT-CAGTCAAGACCGGATATCGAGCG 749
||||||||||.|||||.|| .|.||| ||.||||||||||||||.||.||
RBAM_031100__ 701 AATTTATCGGCAAAGAACG-GTTATTGCAATCAAGACCGGATATTGAACG 749
BSNT_05117___ 750 GGTAGAGCAAATGATGAACAGAACGCCGGTGACGGTATCTGCGGACAAAA 799
.||.|||||.||||||||.|.||.|||.||.||.||..|.||||||||||
RBAM_031100__ 750 CGTCGAGCAGATGATGAATAAAAAGCCTGTCACCGTTACGGCGGACAAAA 799
BSNT_05117___ 800 CGCTTTCTCAGGCGATTCAGCTGATGAGAGAAAAACGTGTTGACTCGCTG 849
|||||||.||||||||.|||.|||||.|.|||.|.|||||.||.||.|||
RBAM_031100__ 800 CGCTTTCGCAGGCGATACAGGTGATGCGGGAACACCGTGTCGATTCCCTG 849
BSNT_05117___ 850 C---TCGTTGTGGACCGGCAAAACGTGCTGAAGGGCTATGTTGATGTGGA 896
| ||||||..||||.| ||.||||||.|.||.|||||.|||||.||
RBAM_031100__ 850 CTTGTCGTTGATGACCTG---AATGTGCTGCAAGGATATGTGGATGTCGA 896
BSNT_05117___ 897 AATGATTGATCAAAACCGCAAAAAAGCGAGCATCGTTGGCGACGTATACC 946
|||.||||||||.|||||.||||||||||||.||||.||||||||...||
RBAM_031100__ 897 AATCATTGATCAGAACCGGAAAAAAGCGAGCCTCGTCGGCGACGTGCTCC 946
BSNT_05117___ 947 GTTCAGATATATATACCGTTCAAAAAGGGG-CGCTTCTTCGCGATACAGT 995
|.||.|||.|.|||||.| ||.|..||||| |.||.||.||||||||.||
RBAM_031100__ 947 GCTCTGATCTGTATACAG-TCGAGCAGGGGACACTGCTGCGCGATACCGT 995
BSNT_05117___ 996 CCGAAAAATTTTGAAGCAGGGGATCAAGTATGTTCCGGTGGTCGATGAAC 1045
.||.||||||||.||||..||.||.||.|||||.||.||.||.|||||||
RBAM_031100__ 996 ACGCAAAATTTTAAAGCGCGGAATGAAATATGTACCCGTCGTTGATGAAC 1045
BSNT_05117___ 1046 AGAACCATTTAGCAGGGATTGTGACAAGAGCGAGCCTCGTTGATATCGTA 1095
|.|..|||||||..||.|||||.||.|||||||||||.||.||.|||||.
RBAM_031100__ 1046 AAAGGCATTTAGTCGGAATTGTCACGAGAGCGAGCCTTGTCGACATCGTT 1095
BSNT_05117___ 1096 TACGATTCCATTTGGGGCGACGAGGAAAACCAGCTCATGACGATCTGA 1143
||||||||.||.||||| |||||||.|||||||..||||...||||
RBAM_031100__ 1096 TACGATTCAATCTGGGG---CGAGGAAGACCAGCTGGTGACAGGCTGA 1140
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