Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05117 and RBAM_031100

See Amino acid alignment / Visit BSNT_05117 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:35
# Commandline: needle
#    -asequence dna-align/BSNT_05117___opuCA.1.9828.seq
#    -bsequence dna-align/RBAM_031100___opuCA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05117___opuCA-RBAM_031100___opuCA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05117___opuCA-RBAM_031100___opuCA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05117___opuCA
# 2: RBAM_031100___opuCA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1148
# Identity:     956/1148 (83.3%)
# Similarity:   956/1148 (83.3%)
# Gaps:          13/1148 ( 1.1%)
# Score: 3991.0
# 
#
#=======================================

BSNT_05117___      1 TTGCTGAAATTGGAACAAGTGTCAAAAGTATATAAAGGCGGCAAAAAAGC     50
                     |||||||.|||.|||.|.||.||||||||.|||||||||||.||||||||
RBAM_031100__      1 TTGCTGAGATTAGAAAATGTATCAAAAGTCTATAAAGGCGGAAAAAAAGC     50

BSNT_05117___     51 TGTGAACAGCATTGATTTAGATATTGCCAAAGGTGAATTTATCTGTTTTA    100
                     |||.|||||||||||||||.||||.|..|||||.||.|||||.|||||||
RBAM_031100__     51 TGTCAACAGCATTGATTTAAATATCGAAAAAGGCGAGTTTATTTGTTTTA    100

BSNT_05117___    101 TCGGCCCGAGCGGCTGCGGAAAAACGACGACGATGAAGATGATCAACAGA    150
                     ||||.||||||||||||||||||||||||||||||||.|||||.||||||
RBAM_031100__    101 TCGGGCCGAGCGGCTGCGGAAAAACGACGACGATGAAAATGATTAACAGA    150

BSNT_05117___    151 CTGATAGAACCATCGTCTGGAAGGATCTTTATCGACGGAGAAAATATTAT    200
                     |||||.||.||.||.||.||||.|||.||||||||.||.|||||.|||||
RBAM_031100__    151 CTGATTGAGCCGTCATCCGGAAAGATTTTTATCGATGGCGAAAACATTAT    200

BSNT_05117___    201 GGAACAGGACCCGGTTGAGCTGAGGAGAAAAATCGGCTATGTGATTCAGC    250
                     |||.|||||||||||.||||||||..|.|||||||||||.||.|||||||
RBAM_031100__    201 GGAGCAGGACCCGGTGGAGCTGAGACGGAAAATCGGCTACGTCATTCAGC    250

BSNT_05117___    251 AGATTGGTTTGTTCCCCCATATGACCATCCAGCAGAACATCTCACTCGTA    300
                     ||||.||..|.|||||.|||||||||||.|||||||||||.||.|||||.
RBAM_031100__    251 AGATCGGACTTTTCCCTCATATGACCATTCAGCAGAACATTTCCCTCGTG    300

BSNT_05117___    301 CCAAAGCTGCTGAAATGGCCTGAGGAAAAGCGGAAAGAACGGGCGCGCGA    350
                     ||.||.||||||||||||||.||..||||||||||.|||||||||||.||
RBAM_031100__    301 CCGAAACTGCTGAAATGGCCGGAACAAAAGCGGAAGGAACGGGCGCGGGA    350

BSNT_05117___    351 GCTGTTAAAGCTTGTGGATATGGGCCCGGAGTATTTAGACCGTTATCCGT    400
                     |||.||.|||||.||.||||||||||||||.|||||||||||.|||||..
RBAM_031100__    351 GCTTTTGAAGCTCGTCGATATGGGCCCGGAATATTTAGACCGCTATCCTC    400

BSNT_05117___    401 ATGAGCTCAGCGGCGGACAGCAGCAGAGAATCGGCGTGCTGCGCGCCCTG    450
                     |.|||||.|||||.|||||||||||||||||||||||||||||||||||.
RBAM_031100__    401 ACGAGCTGAGCGGGGGACAGCAGCAGAGAATCGGCGTGCTGCGCGCCCTT    450

BSNT_05117___    451 GCAGCGGAACCCCCTCTCATTTTAATGGATGAACCGTTCGGAGCGCTTGA    500
                     |||||||||||.||.||.|||.|.||||||||||||||||||||||||||
RBAM_031100__    451 GCAGCGGAACCTCCCCTTATTCTCATGGATGAACCGTTCGGAGCGCTTGA    500

BSNT_05117___    501 TCCGATTACGCGTGATTCCCTTCAGGAAGAATTCAAAAAACTGCAGAGAA    550
                     ||||||||||||.||||||||||||||||||||||||||||||||.||||
RBAM_031100__    501 TCCGATTACGCGGGATTCCCTTCAGGAAGAATTCAAAAAACTGCAAAGAA    550

BSNT_05117___    551 CCTTAAACAAAACGATTGTGTTTGTAACCCACGATATGGATGAAGCGATT    600
                     |.||.||.||||||||||||||||||||||||||||||||||||||.|||
RBAM_031100__    551 CATTGAATAAAACGATTGTGTTTGTAACCCACGATATGGATGAAGCTATT    600

BSNT_05117___    601 AAGCTTGCTGACAGGATTGTGATATTAAAAGCGGGAGAAATCGTTCAAGT    650
                     |||||.||||||.||||.||.||.||||||||||||||.||||||||.|.
RBAM_031100__    601 AAGCTGGCTGACCGGATCGTCATTTTAAAAGCGGGAGAGATCGTTCAGGC    650

BSNT_05117___    651 CGGCACACCTGATGAGATTCTTCGAAACCCGGCAAATGAGTTTGTTGAAG    700
                     ||||||.||||||||.|||||.||.||.|||||.|||||||||||.||||
RBAM_031100__    651 CGGCACTCCTGATGACATTCTCCGGAATCCGGCTAATGAGTTTGTCGAAG    700

BSNT_05117___    701 AATTTATCGGGAAAGAGCGCCTGATT-CAGTCAAGACCGGATATCGAGCG    749
                     ||||||||||.|||||.|| .|.||| ||.||||||||||||||.||.||
RBAM_031100__    701 AATTTATCGGCAAAGAACG-GTTATTGCAATCAAGACCGGATATTGAACG    749

BSNT_05117___    750 GGTAGAGCAAATGATGAACAGAACGCCGGTGACGGTATCTGCGGACAAAA    799
                     .||.|||||.||||||||.|.||.|||.||.||.||..|.||||||||||
RBAM_031100__    750 CGTCGAGCAGATGATGAATAAAAAGCCTGTCACCGTTACGGCGGACAAAA    799

BSNT_05117___    800 CGCTTTCTCAGGCGATTCAGCTGATGAGAGAAAAACGTGTTGACTCGCTG    849
                     |||||||.||||||||.|||.|||||.|.|||.|.|||||.||.||.|||
RBAM_031100__    800 CGCTTTCGCAGGCGATACAGGTGATGCGGGAACACCGTGTCGATTCCCTG    849

BSNT_05117___    850 C---TCGTTGTGGACCGGCAAAACGTGCTGAAGGGCTATGTTGATGTGGA    896
                     |   ||||||..||||.|   ||.||||||.|.||.|||||.|||||.||
RBAM_031100__    850 CTTGTCGTTGATGACCTG---AATGTGCTGCAAGGATATGTGGATGTCGA    896

BSNT_05117___    897 AATGATTGATCAAAACCGCAAAAAAGCGAGCATCGTTGGCGACGTATACC    946
                     |||.||||||||.|||||.||||||||||||.||||.||||||||...||
RBAM_031100__    897 AATCATTGATCAGAACCGGAAAAAAGCGAGCCTCGTCGGCGACGTGCTCC    946

BSNT_05117___    947 GTTCAGATATATATACCGTTCAAAAAGGGG-CGCTTCTTCGCGATACAGT    995
                     |.||.|||.|.|||||.| ||.|..||||| |.||.||.||||||||.||
RBAM_031100__    947 GCTCTGATCTGTATACAG-TCGAGCAGGGGACACTGCTGCGCGATACCGT    995

BSNT_05117___    996 CCGAAAAATTTTGAAGCAGGGGATCAAGTATGTTCCGGTGGTCGATGAAC   1045
                     .||.||||||||.||||..||.||.||.|||||.||.||.||.|||||||
RBAM_031100__    996 ACGCAAAATTTTAAAGCGCGGAATGAAATATGTACCCGTCGTTGATGAAC   1045

BSNT_05117___   1046 AGAACCATTTAGCAGGGATTGTGACAAGAGCGAGCCTCGTTGATATCGTA   1095
                     |.|..|||||||..||.|||||.||.|||||||||||.||.||.|||||.
RBAM_031100__   1046 AAAGGCATTTAGTCGGAATTGTCACGAGAGCGAGCCTTGTCGACATCGTT   1095

BSNT_05117___   1096 TACGATTCCATTTGGGGCGACGAGGAAAACCAGCTCATGACGATCTGA   1143
                     ||||||||.||.|||||   |||||||.|||||||..||||...||||
RBAM_031100__   1096 TACGATTCAATCTGGGG---CGAGGAAGACCAGCTGGTGACAGGCTGA   1140


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