Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05112 and RBAM_031060
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:35
# Commandline: needle
# -asequence dna-align/BSNT_05112___yvaV.1.9828.seq
# -bsequence dna-align/RBAM_031060___yvaV.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05112___yvaV-RBAM_031060___yvaV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05112___yvaV-RBAM_031060___yvaV.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05112___yvaV
# 2: RBAM_031060___yvaV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 551
# Identity: 429/551 (77.9%)
# Similarity: 429/551 (77.9%)
# Gaps: 34/551 ( 6.2%)
# Score: 1709.5
#
#
#=======================================
BSNT_05112___ 1 TTGGAGAAAGATCCGTTA-ACGATCATTGAACAAGCCGAGGACCATTTTA 49
|||||||||||||||||| ||| |.||.||||||||.||.||.|||||.|
RBAM_031060__ 1 TTGGAGAAAGATCCGTTACACG-TAATCGAACAAGCTGAAGATCATTTGA 49
BSNT_05112___ 50 TAGAAAAAATCGCGGAAAACATGCATGCATTTGGAATGCCCTCTACCGTC 99
|||||..||||||.|||||.||||||.||||.|||||||||.|.||.||.
RBAM_031060__ 50 TAGAACGAATCGCTGAAAATATGCATACATTCGGAATGCCCGCGACGGTG 99
BSNT_05112___ 100 GGACGTGTGCTGGGCATTATTTATATGAATCGAAAACCGATGACGCTT-A 148
||.||..|..|.|||||||||||||||||.||.||.|||||||| ||| |
RBAM_031060__ 100 GGGCGCATTTTAGGCATTATTTATATGAACCGCAAGCCGATGAC-CTTAA 148
BSNT_05112___ 149 CGGAATTATCTGAGGCCACCGGCATGAGCAAAACACGCATGAGCCAGGTA 198
|.||||||||.||.||.|||||||||||||||||..|.||||||||||..
RBAM_031060__ 149 CTGAATTATCAGAAGCGACCGGCATGAGCAAAACGAGAATGAGCCAGGCG 198
BSNT_05112___ 199 GTGCGGGAAATGCTTGATGCCAACATTGCCGAGAAGGTGTTCGAAAAAGG 248
||.||.|||||||||||.|.|||..|.||.||.||.|||||.||||||||
RBAM_031060__ 199 GTCCGTGAAATGCTTGACGTCAATCTGGCGGAAAAAGTGTTTGAAAAAGG 248
BSNT_05112___ 249 CGTGCGAAAAGATTTATATGAGGTTGAGCAGGACTACTATCAAACATTTA 298
|||.||.|||||||||||.||.||.||||||||.||.||.|||||.||||
RBAM_031060__ 249 CGTCCGCAAAGATTTATACGACGTCGAGCAGGATTATTACCAAACCTTTA 298
BSNT_05112___ 299 TCACGCTGTTTTCTGCCACCTGGAGCAAAGTCGTCAGCAAAAACAAAATG 348
|.|||||||||.|.|||||.||||||||.||||||||||||||.||||||
RBAM_031060__ 299 TTACGCTGTTTACGGCCACATGGAGCAAGGTCGTCAGCAAAAATAAAATG 348
BSNT_05112___ 349 ATGCATAAAAAACTCAATCGGGAGCTG---------CTT------AGCGT 383
|||||||||||.||.||.||.||.||| ||| .||||
RBAM_031060__ 349 ATGCATAAAAAGCTGAACCGCGAACTGACAGCCGTCCTTGAAAACGGCGT 398
BSNT_05112___ 384 GTTGGATGAAGAGCTTACTCCTGAAGCGGAAGAAAAAGTGAATGAACTGC 433
|..||| .|||||.||.||||||.|.||.|||||||
RBAM_031060__ 399 GCCGGA---------------AGAAGCTGAGGAAAAAATCAACGAACTGC 433
BSNT_05112___ 434 TGAAAGAATTAAAGGAATGGCTTGATTATTATAATTGGCTCAGCCGTTTG 483
||||||||||||||||.|||||||||||.||.||.|||.|||||||..||
RBAM_031060__ 434 TGAAAGAATTAAAGGATTGGCTTGATTACTACAACTGGATCAGCCGCCTG 483
BSNT_05112___ 484 ATTGAGTTTTTTGAGAGCGAAGAAATTTTTAAATATGTGCCGAAGCCGTA 533
||.|||||||||||.||||||||||||||.||..||||.||||||||.||
RBAM_031060__ 484 ATCGAGTTTTTTGAAAGCGAAGAAATTTTCAAGCATGTTCCGAAGCCATA 533
BSNT_05112___ 534 A 534
|
RBAM_031060__ 534 A 534
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