Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05110 and RBAM_031050
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:35
# Commandline: needle
# -asequence dna-align/BSNT_05110___opuBA.1.9828.seq
# -bsequence dna-align/RBAM_031050___opuBA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05110___opuBA-RBAM_031050___opuBA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05110___opuBA-RBAM_031050___opuBA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05110___opuBA
# 2: RBAM_031050___opuBA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1180
# Identity: 916/1180 (77.6%)
# Similarity: 916/1180 (77.6%)
# Gaps: 68/1180 ( 5.8%)
# Score: 3610.5
#
#
#=======================================
BSNT_05110___ 1 TTGCTGACATTAGAAAATGTCTCGAAAACATACAAGGGCGGCAAAAAAGC 50
||||||||||||||||||||||||||||..||.||.|||||.||||||||
RBAM_031050__ 1 TTGCTGACATTAGAAAATGTCTCGAAAATGTATAAAGGCGGGAAAAAAGC 50
BSNT_05110___ 51 TGTGAACAACGTAAATCTTAAGATTGCAAAAGGCGAATTTATCTGCTTTA 100
.||.||||.|.|.||.||.||.||.||.||||||||||||||.||.||||
RBAM_031050__ 51 CGTCAACAGCATCAACCTGAATATCGCCAAAGGCGAATTTATTTGTTTTA 100
BSNT_05110___ 101 TCGGGCCGAGCGGCTGCGGAAAAACGACAACAATGAAAATGATTAACCGA 150
|||||||||||||||||||.||||||||.||.|||||||||||.|||||.
RBAM_031050__ 101 TCGGGCCGAGCGGCTGCGGCAAAACGACGACGATGAAAATGATCAACCGC 150
BSNT_05110___ 151 TTAATTGAGCCTTCCGCCGGAAAG----ATTTTCATTGACGGCGAAAACA 196
|||||||| .|||.|.|||.| ||..|.||.||.|||..|||||
RBAM_031050__ 151 TTAATTGA----ACCGACAGAAGGCAGAATCCTGATAGAAGGCCGAAACA 196
BSNT_05110___ 197 TCATGGACCAGGATCCTGTAGAGCTCAGGCGCAAAATTGGCTATGTGATT 246
|.|||||.||.||.||.||.||.|||||..|.|..||.||||||||.||.
RBAM_031050__ 197 TTATGGAACAAGACCCGGTGGAACTCAGAAGAAGCATCGGCTATGTCATC 246
BSNT_05110___ 247 CAGCAGATCGGCCTGTTTCCCCATATGACCATTCAGCAGAATATCTCACT 296
|||||||||||.||||||||.||||||||||||||||||||.||..|.||
RBAM_031050__ 247 CAGCAGATCGGGCTGTTTCCGCATATGACCATTCAGCAGAACATTACGCT 296
BSNT_05110___ 297 CGTCCCAAA-------------ACTGCTGAAATGGCCGGAGCAGCAGCGG 333
|||.||.|| .||||.|||| |.|||
RBAM_031050__ 297 CGTTCCGAAGCTTTTAAAGCATCCTGCCGAAA-------------AACGG 333
BSNT_05110___ 334 AAAGAACGGGCGCGTGAGCTTTTAAAATTGGTCGATATGGGGCCTGAATA 383
||.|||||||||||.|||||||||||..|.||.|||||||||||||||||
RBAM_031050__ 334 AAGGAACGGGCGCGGGAGCTTTTAAAGCTCGTTGATATGGGGCCTGAATA 383
BSNT_05110___ 384 TGTAGACCGTTACCCTCATGAATTAAGCGGGGGGCAGCAGCAGCGTATTG 433
|.||||||||||||||||||||.|.|||||.||.|||||||||||.||.|
RBAM_031050__ 384 TTTAGACCGTTACCCTCATGAACTGAGCGGAGGACAGCAGCAGCGAATAG 433
BSNT_05110___ 434 GTGTATTACGGGCACTTGCCGCGGAGCCGCCGCTTATCTTAATGGATGAA 483
||||||||||||||||||||||.|||||||||||.|||||||||||||||
RBAM_031050__ 434 GTGTATTACGGGCACTTGCCGCAGAGCCGCCGCTCATCTTAATGGATGAA 483
BSNT_05110___ 484 CCGTTTGGGGCACTCGACCCGATTACGAGGGATTCCCTCCAGGAAGAATT 533
|||||.|||||.||.||||||||||||||.||||||||.|||||||||||
RBAM_031050__ 484 CCGTTCGGGGCGCTTGACCCGATTACGAGAGATTCCCTTCAGGAAGAATT 533
BSNT_05110___ 534 TAAAAAACTGCAAAAAACCTTACATAAAACCATCGTATTTGTTACCCACG 583
||||||||||||||||||||||||||||||||||||||||||||||||.|
RBAM_031050__ 534 TAAAAAACTGCAAAAAACCTTACATAAAACCATCGTATTTGTTACCCATG 583
BSNT_05110___ 584 ATATGGATGAAGCGATTAAGCTGGCAGACCGGATTGTGATTTTAAAAGCG 633
|||||||.|||||.||.|||||.||.|||.|.||.||.|||.|.||||||
RBAM_031050__ 584 ATATGGACGAAGCCATCAAGCTTGCGGACAGAATCGTCATTCTGAAAGCG 633
BSNT_05110___ 634 GGAGAAATCGTTCAAGTTGGAACGCCCGATGACATTTTAAGAAATCCGGC 683
|||||||||||.||.|..||||||||.|||||.|||.|.|||..||||||
RBAM_031050__ 634 GGAGAAATCGTCCAGGCCGGAACGCCTGATGAGATTCTCAGATTTCCGGC 683
BSNT_05110___ 684 AGACGAATTTGTTGAGGAATTTATCGGCAAGGAGCGGCTGATTCAGTCAT 733
..|.||||||||||||||.||||||||||||||.||||||||.||.||||
RBAM_031050__ 684 GAATGAATTTGTTGAGGAGTTTATCGGCAAGGAACGGCTGATCCAATCAT 733
BSNT_05110___ 734 CCAGCCCGGATGTTGAACGGGTTGACCAGATTATGAACACACAGCCTGTA 783
|||||||.|||.||||||||||.||.|||||.|||||..|..|.||.||.
RBAM_031050__ 734 CCAGCCCTGATATTGAACGGGTGGAGCAGATCATGAATCCCGATCCCGTG 783
BSNT_05110___ 784 ACGATCACCGCGGATAAAACGCTTTCTGAGGCCATTCAGCTGATGAG-GC 832
|||.|.||..|.||.|||||.||.||.|..|||||||||||||||.| ||
RBAM_031050__ 784 ACGGTAACACCTGAGAAAACACTGTCAGCCGCCATTCAGCTGATGCGTGC 833
BSNT_05110___ 833 AGGAACGGGTCGATTCATTGCTGGTCGTCGATGACGAGCACGTTCTGCAA 882
.||.|||||.|||||..||||.|||.|.|||||..||.|||||||.|||
RBAM_031050__ 834 -CGAGCGGGTGGATTCGCTGCTCGTCATTGATGAAAAGAACGTTCTCCAA 882
BSNT_05110___ 883 GGCTATGTCGATGTTGAAATCATTGATCAATGCCGGAAA--AAGGCCAAT 930
||.|||||||||||.||.||.||||| |||.||| || |.|||.
RBAM_031050__ 883 GGTTATGTCGATGTGGAGATGATTGA------CCGCAAACGAA-GACAAG 925
BSNT_05110___ 931 CTCATAGGT----------GAGGT--TTTACATGAAGATATATACACAGT 968
| ||| ||.|| |||||..| |||.|.|||||.||
RBAM_031050__ 926 C-----GGTAACCGTCGCGGAAGTGCTTTACCGG--GATCTGTACACGGT 968
BSNT_05110___ 969 ACTG-GGCGGCACACTGCTGCGCGACACGGTCCGCAAAATTTTAAAACGG 1017
|.| .|||||||.|||||.||||||.|.||||..||||||||||||.|.
RBAM_031050__ 969 -CAGAAGCGGCACTCTGCTCCGCGACGCCGTCCATAAAATTTTAAAAAGA 1017
BSNT_05110___ 1018 GGTGTCAAATATGTTCCCGTTGTGGATGAAGACCGACGCCTGATCGGAAT 1067
||..|.||||.|||.||.||..|.|||||||.|.|.||.||.|..|||||
RBAM_031050__ 1018 GGCATGAAATTTGTGCCGGTCCTTGATGAAGCCGGCCGGCTAACGGGAAT 1067
BSNT_05110___ 1068 TGTGACGAGGGCAAGTCTGGTCGACATCGTGTATGACTCCCTCTGGGGAG 1117
.|||||.||||||||.||.||.||||||||.|||||||||.|||||||||
RBAM_031050__ 1068 CGTGACAAGGGCAAGCCTCGTTGACATCGTCTATGACTCCATCTGGGGAG 1117
BSNT_05110___ 1118 AAGAAAAGCAGCTCGCAGCATTGTCATAG- 1146
||||.||.||||||||.|...|||||| |
RBAM_031050__ 1118 AAGAGAATCAGCTCGCGGTGATGTCAT-GA 1146
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