Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05107 and RBAM_031020
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:35
# Commandline: needle
# -asequence dna-align/BSNT_05107___opuBD.1.9828.seq
# -bsequence dna-align/RBAM_031020___opuBD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05107___opuBD-RBAM_031020___opuBD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05107___opuBD-RBAM_031020___opuBD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05107___opuBD
# 2: RBAM_031020___opuBD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 708
# Identity: 509/708 (71.9%)
# Similarity: 509/708 (71.9%)
# Gaps: 57/708 ( 8.1%)
# Score: 1858.5
#
#
#=======================================
BSNT_05107___ 1 ---------ATGAACGTGCTTGAACAGTTAATGACGTATTACGCGCAGAA 41
|||||.|.||| || |.||||||||.||.||.||
RBAM_031020__ 1 ATGGACACGATGAAGGAGCT------GT---TTACGTATTATGCTCAAAA 41
BSNT_05107___ 42 TGGCAGTTACGTCATGGATGAATTCGGCCGCCACTTTCTCATGTCGGCTT 91
.||||||||.||..||.||||.|.|.|.||.|||||||||||||||||.|
RBAM_031020__ 42 CGGCAGTTATGTTCTGTATGAGTGCTGGCGGCACTTTCTCATGTCGGCGT 91
BSNT_05107___ 92 ACGGCGTATTGTGTGCCGCTGTCGTCGGGGTTCCGGCCGGAATCCTCATC 141
|||||||..|.|..|||||.||..|||...|||||||||||||..|.|..
RBAM_031020__ 92 ACGGCGTCGTTTTCGCCGCCGTTTTCGCCATTCCGGCCGGAATTGTGACA 141
BSNT_05107___ 142 GC---GCA-----TTTTCGCCGTTTGTCAGCCTGGGTGTTTGCCGTAACA 183
|| ||| .|.||||| |.||||||||||||.||..|.
RBAM_031020__ 142 GCAAGGCACGGGCGTCTCGCC--------GGCTGGGTGTTTGCTGTGGCG 183
BSNT_05107___ 184 AACGTTATTCAAACAATCCCGGCGCTCGCTATGCTGGCCGTCTTAATGCT 233
|||||.||||||||..|.||||||||.||.|||||.||||||.|.|||||
RBAM_031020__ 184 AACGTGATTCAAACCGTTCCGGCGCTTGCGATGCTCGCCGTCCTGATGCT 233
BSNT_05107___ 234 TGTTATGGGGCTCGGCGCAAATACCGTGATTCTATCA-----TTATTTCT 278
.||.|||||.||||||||.|||||.|| .|||| ||.|||.|
RBAM_031020__ 234 CGTCATGGGACTCGGCGCCAATACGGT-----CATCACGGCTTTGTTTTT 278
BSNT_05107___ 279 GTATTCCCTGCTGCCGATTATTCGAAACACGTACACAGGCATTATCAGTA 328
||||||.||||||||||||.|..||||.|||.||||.||||||||||.||
RBAM_031020__ 279 GTATTCACTGCTGCCGATTCTCAGAAATACGCACACGGGCATTATCAATA 328
BSNT_05107___ 329 TTGAACATGCCTACTTAGAATCGGGAAAAGCAATGGGCATGACGAAATTC 378
|.||.||.||.||..|.||.||||||||.||.||||||||||||||||.|
RBAM_031020__ 329 TCGAGCACGCTTATCTCGAGTCGGGAAAGGCGATGGGCATGACGAAATAC 378
BSNT_05107___ 379 CAAGTGCTCAGAATGGTTGAGCTCCCGCTCGCACTTTCTGTCATTATGGC 428
|||.|.||..|.|||||.|||||.|||||.||.|||||.|||||||||||
RBAM_031020__ 379 CAAATCCTTCGTATGGTGGAGCTGCCGCTTGCGCTTTCCGTCATTATGGC 428
BSNT_05107___ 429 GGGCCTTCGCACGGCTCTCGTCATTGCCATTGGAATTACAGCGATCGGCA 478
|||.||.||.|||||.||||||||||||||.||.||.||.||||||||||
RBAM_031020__ 429 GGGTCTCCGAACGGCGCTCGTCATTGCCATCGGCATCACGGCGATCGGCA 478
BSNT_05107___ 479 CATTTGTCGGTGCCGGAGGCCTTGGGGACATGATTGTCCGCGGCTCAAAC 528
|.||.|||||.||.||.|||||.||.||.|||||.|||.|.||.||.|||
RBAM_031020__ 479 CCTTCGTCGGGGCGGGCGGCCTCGGCGATATGATCGTCAGAGGGTCGAAC 528
BSNT_05107___ 529 GCAACAAACGGAACTGCGATTATTCTAGCCGGAGCGATACCAACTGCGGT 578
||.|||||||||||.||.||||||.|.||.||.||.||.||.||.|||.|
RBAM_031020__ 529 GCGACAAACGGAACCGCCATTATTTTGGCGGGCGCCATCCCGACCGCGCT 578
BSNT_05107___ 579 GATGGCGGTAGGGGCGGATTTGCTCATGGCCTGGCTGGAGCGGGCATTAA 628
|||||||||||..||.||..||||.|||||.||||||||.||.||..|.|
RBAM_031020__ 579 GATGGCGGTAGCCGCAGACCTGCTGATGGCGTGGCTGGAACGAGCCCTCA 628
BSNT_05107___ 629 GTCCGGTGAAGAAAAAAAGAACCGGGGCGAAA----CACGTTCAATCAGC 674
|.||||||||.|||.|||.|| |||| ..|||.|..|||||
RBAM_031020__ 629 GCCCGGTGAAAAAACAAAAAA-------GAAAGCTGATCGTACGCTCAGC 671
BSNT_05107___ 675 TGCATAG- 681
..||| |
RBAM_031020__ 672 CTCAT-GA 678
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