Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03882 and RBAM_030880

See Amino acid alignment / Visit BSNT_03882 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:10
# Commandline: needle
#    -asequence dna-align/BSNT_03882___yrdF.1.9828.seq
#    -bsequence dna-align/RBAM_030880___yrdF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03882___yrdF-RBAM_030880___yrdF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03882___yrdF-RBAM_030880___yrdF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03882___yrdF
# 2: RBAM_030880___yrdF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 315
# Identity:     196/315 (62.2%)
# Similarity:   196/315 (62.2%)
# Gaps:          48/315 (15.2%)
# Score: 601.5
# 
#
#=======================================

BSNT_03882___      1 ATGAGAAA-AATAATGATAGATGGAAGAGACTTT----GAAAATATTGAA     45
                     ||| |||| ..|.||.|||||.||||.|||..||    |.|.|    |||
RBAM_030880__      1 ATG-GAAATCGTCATCATAGACGGAAAAGATGTTACCAGCACA----GAA     45

BSNT_03882___     46 GTTTTACA-TGATGTTTTAAAAGATAAATTAGACTTCCCAGACTACTATG     94
                     |.|||||| .|| .|.||.||||||.|||||||.|||||.||||..||||
RBAM_030880__     46 GCTTTACACCGA-ATCTTGAAAGATCAATTAGATTTCCCGGACTTTTATG     94

BSNT_03882___     95 GAGGAAATTTAGACGCTTTATGGGATTGCCTGACAGGGTGGGTGGATTTG    144
                     |.|.||||.|..|.||.|||||||||||.||||||||.|||.|.||.|..
RBAM_030880__     95 GTGAAAATCTGAATGCCTTATGGGATTGTCTGACAGGCTGGATCGAATAT    144

BSNT_03882___    145 CCGCTTACTTTAGTCTTGATAAATTTTGAGTTTAGTAAAAAGTTTTTAGG    194
                     |||||.|||||.||.|.||..|||||||||.|.|||.|.|||...||.||
RBAM_030880__    145 CCGCTGACTTTGGTGTGGAAGAATTTTGAGATCAGTCAGAAGGAATTGGG    194

BSNT_03882___    195 TTCATACGCTAATGATGTATTAGAAGTTTTACAAGAGGCTCAAGAGGAAT    244
                     ||...|.|||.|||||||.||.||..|.||.||||||||||||||.||.|
RBAM_030880__    195 TTTGGATGCTGATGATGTCTTGGAGCTGTTTCAAGAGGCTCAAGAAGAGT    244

BSNT_03882___    245 TAAAGG---ACGAGTTTAAAATAATAATAGAATAG---------------    276
                     |  |||   .|| ||||...||...|||.||..||               
RBAM_030880__    245 T--AGGTAATCG-GTTTGTCATTCAAATCGATCAGCCGTCAGCCGGGACA    291

BSNT_03882___    276 ---------------    276
                                    
RBAM_030880__    292 ACGGACAGGCACTAA    306


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