Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05005 and RBAM_030710
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:33
# Commandline: needle
# -asequence dna-align/BSNT_05005___yvaA.1.9828.seq
# -bsequence dna-align/RBAM_030710___yvaA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05005___yvaA-RBAM_030710___yvaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05005___yvaA-RBAM_030710___yvaA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05005___yvaA
# 2: RBAM_030710___yvaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1125
# Identity: 748/1125 (66.5%)
# Similarity: 748/1125 (66.5%)
# Gaps: 132/1125 (11.7%)
# Score: 2409.0
#
#
#=======================================
BSNT_05005___ 1 TTGATAACGCTTTTAAAGGGGAGAAGAAAAGTGGATACGATCAAGGTTGG 50
||||.||| ||||| |.||.||
RBAM_030710__ 1 TTGAAAAC-------------------------GATAC-----AAGTCGG 20
BSNT_05005___ 51 AATATTAGGATACGGATTGTCCGGTTCTGTTTTTCACGGGCCGCTGCTGG 100
.|||||.|||||.||.|||||.|||...||||||||.|.||||||..|||
RBAM_030710__ 21 CATATTGGGATATGGTTTGTCGGGTAAAGTTTTTCATGCGCCGCTTTTGG 70
BSNT_05005___ 101 ATGTTCTGGATGAATATCAAATCAGCAAAATCATGACATCTCGGACAGAA 150
|.||.||.|||||.|||||.||||..|||.|||||||.||..|.||.||.
RBAM_030710__ 71 ACGTCCTTGATGATTATCAGATCAAAAAAGTCATGACGTCCAGAACGGAG 120
BSNT_05005___ 151 GAAGTGAAACGGGACTTTCCAGATGCTGAGGTTGTACATGAGCTTGAGGA 200
||.||.|||||.||..|.||.|..|||||.|..||.|..|.|.||||.||
RBAM_030710__ 121 GAGGTCAAACGTGATCTGCCGGGGGCTGAAGCCGTGCGCGCGATTGAAGA 170
BSNT_05005___ 201 AATCACAAATGACCCTGCCATTGAGCTTGTCATTGTCACCACCCCGAGCG 250
.||.||...|||.||||.||||||.||.||||||||.||.||.|||||||
RBAM_030710__ 171 CATTACCGGTGATCCTGACATTGATCTCGTCATTGTTACGACACCGAGCG 220
BSNT_05005___ 251 GCCTTCATTACGAGCAT--GCTATGGCATGCATACAGGCCGGAAAACATG 298
|..|.|||||.|| || ||.|||..|||..|.|.|||.||||||||..
RBAM_030710__ 221 GAATGCATTATGA--ATCAGCGATGAAATGTCTCCTGGCGGGAAAACACA 268
BSNT_05005___ 299 TTGTGATGGAAAAACCAATGACAGCAA---CAGCCGAAGAGGGGGA---- 341
..||..||||||||||.|||||.||.| ||||.||||.||.|||
RBAM_030710__ 269 CCGTCGTGGAAAAACCGATGACGGCGACTTCAGCAGAAGCGGAGGAGCTG 318
BSNT_05005___ 342 AACATTAAAAAGGGCTGCCGATGAAAAAGGCGTATTATTAAGCGTATATC 391
| .||.||.|||| ||.||.||||||||.||..|.|||||.||||
RBAM_030710__ 319 A----GAAGAACGGCT---GAAGATAAAGGCGTCTTGCTGAGCGTGTATC 361
BSNT_05005___ 392 ATAACCGACGCTGGGATAACGACTTTTTAACGATTAAAAAGCTGATCTC- 440
|.|||||.||||||||.||.||||||||||||||..|||||||||| ||
RBAM_030710__ 362 ACAACCGGCGCTGGGACAATGACTTTTTAACGATACAAAAGCTGAT-TCG 410
BSNT_05005___ 441 TGAGGGATCTCTTGAAGATATCAATACATATCAAGTTTCCTATGACCGCT 490
.||.||..|.|||.||||.||..|||||||||||||...|||.||.|..|
RBAM_030710__ 411 GGACGGGGCGCTTCAAGACATTCATACATATCAAGTCAGCTACGATCTAT 460
BSNT_05005___ 491 ACAGACCTGAAGTTCAAGCGCGG-----TGGCGGGAAAAAGAA-GGCATT 534
|||..||.|..||.|| || |||||.| ||||||| ||....
RBAM_030710__ 461 ACAACCCGGTTGTACA-----GGAAAAATGGCGCG-AAAAGAACGGACCC 504
BSNT_05005___ 535 GCCACTGGTACGCTGTATGATCTCGGCTCCCACATCATAGACCAAACCCT 584
|||||.||.|||||||||||||||||.||.||.||.||.|||||.||.||
RBAM_030710__ 505 GCCACGGGAACGCTGTATGATCTCGGTTCACATATTATTGACCAGACACT 554
BSNT_05005___ 585 GCATTTGTTTGGGATGCCTAAAGCCGTGACTGCAAACGTGATGGCCCAGC 634
.|...|.||.||.|||||..||.||||.||.|||.|.||||||...||||
RBAM_030710__ 555 TCTGCTTTTCGGAATGCCGGAATCCGTCACCGCACATGTGATGAAACAGC 604
BSNT_05005___ 635 GGGAAAATGCCGAAACGGTTGACTATTTTCATTTAACC---CTGGACTAT 681
||||.||....|||||.|||||..|||||| |..|| ||..|.||.
RBAM_030710__ 605 GGGACAACAGTGAAACCGTTGATAATTTTC---TGGCCGCGCTCCATTAC 651
BSNT_05005___ 682 GGCAAGCTTCAAGCCATTCTATACGGGGGATCAATC--GTTC-------- 721
|||||.|||||.|.|||||| |||||| |.||
RBAM_030710__ 652 GGCAAACTTCAGGTCATTCT----------TCAATCCGGCTCCATGAATG 691
BSNT_05005___ 722 CGGCAAACGGACCTCGTTATCAAATCCATGGAAAAGATTCCAGCTTTATC 771
||||||.|||.||.||.|||||.||.||.|||....||.|.|||||||||
RBAM_030710__ 692 CGGCAAGCGGCCCGCGCTATCAGATTCACGGACGGAATGCAAGCTTTATC 741
BSNT_05005___ 772 AAATACGGAATTGACGGACAGGAAGACGCACTCAGAGCGGGAAGAAAACC 821
|||||||||||.||.|||||||||||.||.||...||||||.| ||||.|
RBAM_030710__ 742 AAATACGGAATGGATGGACAGGAAGATGCGCTTTCAGCGGGCA-AAAAGC 790
BSNT_05005___ 822 AGA-GGATGACAGCTGGGGTGCAGATGATCCGGAGTTTTACGGACAGCTT 870
.|| .||.|||||||||||.||.||||||||.||....|.||||.||||.
RBAM_030710__ 791 CGATTGACGACAGCTGGGGCGCCGATGATCCTGACAACTTCGGAGAGCTG 840
BSNT_05005___ 871 ACAACCATTCGTGGCTCCGG----CAAAA---AAACAGAAACGATCCCAT 913
|||| |.||..||| .|||| |.||||||||.|||||.|
RBAM_030710__ 841 ACAA-------TCGCAGCGGATGAGAAAAGGCATACAGAAACAATCCCCT 883
BSNT_05005___ 914 CAGTAAATGGCTCCTACCTTACTTATTACCGCAAAA----TAGCGGAAAG 959
|.|..||.|||||.||||||||.||.||| ||| |.||.||.||
RBAM_030710__ 884 CTGAGAACGGCTCTTACCTTACGTACTAC----AAACTGCTGGCAGACAG 929
BSNT_05005___ 960 CAT-----ACGGGAAGGTGCTGCGCTGCCAGTCACTGCTGAGGAAGGTAT 1004
||| ||||.|| ..||||.||.||.||.||..|.|||||.||
RBAM_030710__ 930 CATCTTAAACGGAAA-----ACCGCTTCCCGTTACGGCAAAAGAAGGCAT 974
BSNT_05005___ 1005 TAATGTCATCCGCATCATTGAAGCCGCGATGAAAAGCAGTAAAGAGAAAC 1054
..||||||||||..||||||||||.||||||||||||||..||.|.||||
RBAM_030710__ 975 CGATGTCATCCGTGTCATTGAAGCGGCGATGAAAAGCAGCGAACAAAAAC 1024
BSNT_05005___ 1055 GAACCATTATGCTGGAGCAC--TAA 1077
|.||.||| ||.| |||
RBAM_030710__ 1025 GGACGATT--------GCCCTTTAA 1041
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