Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04996 and RBAM_030660
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:32
# Commandline: needle
# -asequence dna-align/BSNT_04996___bdbD.1.9828.seq
# -bsequence dna-align/RBAM_030660___bdbD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04996___bdbD-RBAM_030660___bdbD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04996___bdbD-RBAM_030660___bdbD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04996___bdbD
# 2: RBAM_030660___bdbD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 707
# Identity: 502/707 (71.0%)
# Similarity: 502/707 (71.0%)
# Gaps: 73/707 (10.3%)
# Score: 1806.0
#
#
#=======================================
BSNT_04996___ 1 GTGAAAAAGAAACAGCAGTCTTCTGCGAAATTCGCGGTCATCCTTACGGT 50
|||||||||||| ||.||.|||||.|||||.|||||.||.||.|||.|
RBAM_030660__ 1 GTGAAAAAGAAA---CAATCGTCTGCAAAATTTGCGGTGATTCTGACGTT 47
BSNT_04996___ 51 TGTGGTTGTTGTATTGCTAGCAGCCATTGTCATCATTAATAACAAAACGG 100
..|.|||||.||.||..|.||.|||||.||.||.|||||.|||.||||||
RBAM_030660__ 48 AATCGTTGTCGTTTTATTTGCGGCCATCGTAATTATTAACAACCAAACGG 97
BSNT_04996___ 101 AACAAG-----GTAATGATGCGGTGTCCGGGCAGCCGTCTATCAAAGGGC 145
||.||| |.|| |.||..|||..|||||.||.||.|||||.|
RBAM_030660__ 98 AAAAAGCGGGCGAAA-----CAGTCGCCGAACAGCCTTCCATTAAAGGAC 142
BSNT_04996___ 146 AGCCTGTGCTTGGCAAGGACGATGCACCGGTAACTGTAGTAGAATTCGGA 195
||||.|||||.|||||.|||...||.||.||.||.|||||.|||||||||
RBAM_030660__ 143 AGCCCGTGCTCGGCAAAGACAGCGCCCCTGTTACGGTAGTTGAATTCGGA 192
BSNT_04996___ 196 GATTACAAATGTCCGTCTTGCAAGGTGTTTAACAGTGACATCTTTCCAAA 245
||||||||.||||||||.|||||.||.||||||||.||.||||||||.||
RBAM_030660__ 193 GATTACAAGTGTCCGTCATGCAAAGTATTTAACAGCGATATCTTTCCGAA 242
BSNT_04996___ 246 AATACAAAAAGACTTTATTGATAAGGGCGATGTGAAATTTTCTTTCGTGA 295
|||..|||||||.|||||.|||||.|||||.|||||||||||.||.||||
RBAM_030660__ 243 AATCAAAAAAGATTTTATCGATAAAGGCGACGTGAAATTTTCATTTGTGA 292
BSNT_04996___ 296 ACGTCATGTTCCATGGAAAAGGTTCAAGGTTAGCGGCTCTTGCATCTGAA 345
||||.||||.|||.||||..||.||..|..|.|||||||||||.||.|||
RBAM_030660__ 293 ACGTTATGTACCACGGAAGCGGCTCGCGTCTGGCGGCTCTTGCTTCAGAA 342
BSNT_04996___ 346 GAAGTATGGAAGGAAGACCCTGACTCTTTTTGGGATTTCCATGAAAAGCT 395
|||||.|||||.||||||||.|..||.||.||||..||||||||||||||
RBAM_030660__ 343 GAAGTGTGGAAAGAAGACCCGGCATCATTCTGGGCATTCCATGAAAAGCT 392
BSNT_04996___ 396 GTTCGAAAAACAGCCGGATACGGAACAGGAATGGGTAACCCCAGGCCT-C 444
|||.|||.|.||||||...|..|||||||||||||| ||.|||| |
RBAM_030660__ 393 GTTTGAACAGCAGCCGTCAAGCGAACAGGAATGGGT-----CACGCCTGC 437
BSNT_04996___ 445 CTTGGTGATCTTGCA---------AAAAGCACC---ACAAAGATAAAACC 482
.||| ||||.| ||||||||| |.||||.|..|.||
RBAM_030660__ 438 ATTG-----CTTGAAAAAACGGTCAAAAGCACCGCGAAAAAGGTTGATCC 482
BSNT_04996___ 483 TGAGACGCTCAAGGAAAATCTTGATAAGGAAACATTCGCTTCTCAAGTGG 532
|||.|.|||.||||||||.||||||||.||.||||| ||.
RBAM_030660__ 483 TGACAAGCTGAAGGAAAACCTTGATAAAGAGACATT-----------TGC 521
BSNT_04996___ 533 AAAAG-----------GATTCTGACCTTAATCAAAAAATGAACA-TACAG 570
||||| ||..|||||||.|||.|.|||.|.|||| ||| |
RBAM_030660__ 522 AAAAGAGCTGAAAGCTGACACTGACCTGAATGATAAATTAAACATTAC-G 570
BSNT_04996___ 571 GCAACACCGACGATTTACGTCAATGATAAAGTGATCAAAAATTTTGCGGA 620
||.||||||||||||||.||.|||||.||||||||.||..|.||..|..|
RBAM_030660__ 571 GCGACACCGACGATTTATGTAAATGACAAAGTGATTAATGACTTCTCTAA 620
BSNT_04996___ 621 TTATGATGAAA--TCAAAGAGACAATAGAAAAAGAGCTGAAAGGGAAGTA 668
.||||||||.| |||| |.||.||..|.|||||||||||| ||..|
RBAM_030660__ 621 ATATGATGAGATTTCAA--AAACGATTAAGAAAGAGCTGAAA---AATGA 665
BSNT_04996___ 669 A------ 669
|
RBAM_030660__ 666 AAAATAG 672
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