Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04977 and RBAM_030490

See Amino acid alignment / Visit BSNT_04977 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:31
# Commandline: needle
#    -asequence dna-align/BSNT_04977___yvgK.1.9828.seq
#    -bsequence dna-align/RBAM_030490___yvgK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04977___yvgK-RBAM_030490___yvgK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04977___yvgK-RBAM_030490___yvgK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04977___yvgK
# 2: RBAM_030490___yvgK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 963
# Identity:     680/963 (70.6%)
# Similarity:   680/963 (70.6%)
# Gaps:          69/963 ( 7.2%)
# Score: 2264.0
# 
#
#=======================================

BSNT_04977___      1 ATGATGAATGAAACCTCTTCCTATACGATAGAAGAAGTTGCAGGTCTGCT     50
                        ||||..|||.||.||||||||||.||||||||||||||.||.||..|
RBAM_030490__      1 ---ATGACAGAAGCCACTTCCTATACAATAGAAGAAGTTGCGGGCCTTTT     47

BSNT_04977___     51 GAAGGTATCAAAGCTGACCGTTTATGATTTGATTAAAAAAGGCGTGCTGC    100
                     ||||||.||.||.|||||.||.|||||||||||.||||||||..|..|.|
RBAM_030490__     48 GAAGGTCTCCAAACTGACAGTATATGATTTGATAAAAAAAGGACTCATTC     97

BSNT_04977___    101 CTGCTTATCGTGTCGGAAGGCAGATGCGTGTGGATGAAGAAGATTTAAAG    150
                     |.||.||..|.||||||||.||||||.|.||.||||||||.||.|||||.
RBAM_030490__     98 CGGCGTACAGGGTCGGAAGACAGATGAGGGTCGATGAAGAGGACTTAAAA    147

BSNT_04977___    151 CAATATAAAACGAATATGAGAATGTC---TCAGCCCATCGCTGCAACAGA    197
                     |||||||||.|.||.|||||||||||   ..|| ||||  |.|.|.||||
RBAM_030490__    148 CAATATAAAGCAAACATGAGAATGTCAAAAAAG-CCAT--CCGTATCAGA    194

BSNT_04977___    198 AGCGCC-GAAACAGGT---GCAGGAGGCTGAGCCGG----ACGGCAGACG    239
                     |||.|| |  ||..||   ||.||.||  |||||||    |.|||||.| 
RBAM_030490__    195 AGCACCTG--ACCCGTCCCGCGGGCGG--GAGCCGGAAAAAAGGCAGTC-    239

BSNT_04977___    240 GAATGTCATGATCAGCGGACAGGACATTTCGATGGATCTTCTCAGCAAGC    289
                        .||.||.||||||||.|||||..|.||||||||.|||||||||||.|
RBAM_030490__    240 ---CGTTATCATCAGCGGGCAGGATGTGTCGATGGACCTTCTCAGCAAAC    286

BSNT_04977___    290 ATTTGGAGAATGCCATTCAGGAGACGCCGCTCCGTAAATACAAAGGAAGC    339
                     |..||||..|..|.||.||||.|.|.||||||||.||.||||..||.||.
RBAM_030490__    287 AGCTGGAACAAACAATACAGGCGGCTCCGCTCCGCAAGTACAGCGGCAGT    336

BSNT_04977___    340 TTAAACAGCCTGATTGATATGTATCAAGGCAAG--TGTGACATTGTCAGC    387
                     ||.|||||||||||.||.|||||.|..||  ||  ||||||||.|||||.
RBAM_030490__    337 TTGAACAGCCTGATCGAGATGTACCGCGG--AGCTTGTGACATCGTCAGT    384

BSNT_04977___    388 CTCCATTTGTACGATGCTGAAACGGGCCAGTATAACGCTCCTTATGTAAA    437
                     ||.|||||||||||||..||.|||||.|||||||||...||.|||||.||
RBAM_030490__    385 CTGCATTTGTACGATGGGGAGACGGGGCAGTATAACATCCCGTATGTGAA    434

BSNT_04977___    438 ACGGAT--TTTGACAGGTGAACCGTTT----TGTCTCATCAATGTCGTTC    481
                     .||.||  |||  ||||.||.||||||    |.|.||    |||||||.|
RBAM_030490__    435 GCGCATCCTTT--CAGGGGAGCCGTTTGCGCTTTTTC----ATGTCGTGC    478

BSNT_04977___    482 TCCGCAAAGCAGGACTGTATGTGAAAAAAGGGAATCCGAAAAACATTCAA    531
                     |.||..|.||.|||.|.|||||||||||.||.||||||...||||||||.
RBAM_030490__    479 TTCGTCAGGCCGGATTATATGTGAAAAAGGGCAATCCGCTGAACATTCAG    528

BSNT_04977___    532 GGCTGGAAAGACTTGA----AAAGAGCCGATATCCGGATCATCAACAGGG    577
                     ||||...|.||.||||    ||||    |||.||||.|||.||||..|.|
RBAM_030490__    529 GGCTTTCAGGATTTGAGCCGAAAG----GATGTCCGCATCGTCAATCGCG    574

BSNT_04977___    578 AAAAGGGTTCTGGCGCAAGGGTGCTCCTTGATGAACAGCTTGGCTTGCTT    627
                     ||||.||.||.|||||.||||||||.||.|||||||||||..|.|...|.
RBAM_030490__    575 AAAAAGGATCAGGCGCGAGGGTGCTGCTGGATGAACAGCTCAGATCATTC    624

BSNT_04977___    628 GGTGTGAATCCGGCTGATGTAAAGGGATACGGCGATATCGTGACCGATCA    677
                     ||..|.|..|||.|||||||....||.||....||.||.||.||.|||||
RBAM_030490__    625 GGCATCACGCCGTCTGATGTCGCCGGCTATCATGACATTGTCACGGATCA    674

BSNT_04977___    678 TTACGCT----GCCGCTTCACAAGTTTCAAGCGGACAGGCTGACGCGGGA    723
                     |    ||    ||.|||||||||||.|||||||||.||||.||....|||
RBAM_030490__    675 T----CTGTCAGCGGCTTCACAAGTATCAAGCGGAAAGGCGGATATCGGA    720

BSNT_04977___    724 ATCGGGGCGCAGCACGCGGCACATAT---GGGCA-GTGTTGATTTTATCC    769
                     .|||||.|||||||.|||||.|||||   ||||| |    ||.|||||||
RBAM_030490__    721 GTCGGGTCGCAGCATGCGGCGCATATGGCGGGCACG----GACTTTATCC    766

BSNT_04977___    770 CGCTCATCGACGAACAATATGATATCGTTGTTTTGAAAAAACATGAGCAG    819
                     ||.|.|||...||.||.||.|||.|.||.||.||.|||.||.|...|.||
RBAM_030490__    767 CGGTGATCAGTGAGCAGTACGATGTGGTCGTCTTAAAACAAAACCGGGAG    816

BSNT_04977___    820 C-TGCTGAAAGCCGTGAAGGAGATTTTGAATTCTGAGGAATACAAGGCGA    868
                     | ||.|.|||| ||||.||||.|||.|.|||||||||||||.||||.|..
RBAM_030490__    817 CTTGTTCAAAG-CGTGCAGGACATTCTTAATTCTGAGGAATTCAAGTCCC    865

BSNT_04977___    869 ATTTGTCTCATTTAAACGGCTATGAAACGAAGCTGACTGGCAAGG-TGAT    917
                     |..|.|||||.|||..|||.|||||.|||||..||||.|| |.|| |.||
RBAM_030490__    866 AGCTTTCTCAATTATCCGGATATGATACGAAAATGACCGG-ACGGCTCAT    914

BSNT_04977___    918 GTTGGAAACGTAA    930
                     .|..|||||.|.|
RBAM_030490__    915 ATATGAAACATGA    927


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04977 and RBAM_030490

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
