Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04971 and RBAM_030450
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:30
# Commandline: needle
# -asequence dna-align/BSNT_04971___yvsH.1.9828.seq
# -bsequence dna-align/RBAM_030450___yvsH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04971___yvsH-RBAM_030450___yvsH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04971___yvsH-RBAM_030450___yvsH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04971___yvsH
# 2: RBAM_030450___yvsH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1434
# Identity: 1119/1434 (78.0%)
# Similarity: 1119/1434 (78.0%)
# Gaps: 45/1434 ( 3.1%)
# Score: 4293.0
#
#
#=======================================
BSNT_04971___ 1 ATGGAACAGACAAAAAAATGGGGTTTTTGGTTATTAACGGCGTTTGTCGT 50
|||||||||||.||||||||||||||||||||||||||||||||||||||
RBAM_030450__ 1 ATGGAACAGACGAAAAAATGGGGTTTTTGGTTATTAACGGCGTTTGTCGT 50
BSNT_04971___ 51 TGGAAATATGGTTGGATCAGGAATTTTCTC-CTTGCCGAGCTCGCTTGCT 99
.|||||||||||.||.||.||.||.||.|| ||| |||||.|||||.||.
RBAM_030450__ 51 AGGAAATATGGTAGGCTCGGGCATCTTTTCGCTT-CCGAGTTCGCTCGCA 99
BSNT_04971___ 100 TCAATTGCGAGTCCGTTTGGAGCTACGTCCGCCTGGCTTTTGACAGGTGC 149
..|||.|||||.|||||.||.||.||.||.||.||||||||.||.||.||
RBAM_030450__ 100 AAAATCGCGAGCCCGTTCGGCGCCACATCGGCATGGCTTTTAACGGGAGC 149
BSNT_04971___ 150 CGGCGTGCTGATGATTGCACTTGTGTTCGGACATTTGTCCATTCGCAAGC 199
|||.|||.|.|||||.||.||.||.|||||.||.||.|||||.|||||||
RBAM_030450__ 150 CGGTGTGTTAATGATCGCGCTGGTCTTCGGCCACTTATCCATCCGCAAGC 199
BSNT_04971___ 200 CTGAACTGACAGCGGGACCGCAAAGTTATGCAAGAGCGCTGTTTTCTGAC 249
||||.|||||.|||||.||||||||.|||||..|.||||||||....||.
RBAM_030450__ 200 CTGAGCTGACGGCGGGGCCGCAAAGCTATGCGCGTGCGCTGTTCAGCGAT 249
BSNT_04971___ 250 CCGAAAAAAGGCAACGCTGCCGGTTTCACAATGGTGTGGGGCTACTGGGT 299
|.|||||||||.||.||.||.||.|||||.||||||||||||||||||||
RBAM_030450__ 250 CGGAAAAAAGGGAATGCAGCGGGCTTCACGATGGTGTGGGGCTACTGGGT 299
BSNT_04971___ 300 GGCGAGCTGGATCAGTAACGTGGCGATCATCACAAGTCTCGCCGGTTACT 349
|||||||||||||||.|||||||||||||||||.||.||.|||||.||.|
RBAM_030450__ 300 GGCGAGCTGGATCAGCAACGTGGCGATCATCACGAGCCTTGCCGGATATT 349
BSNT_04971___ 350 TGACTTCGTTCTTCCCGATCTTGGTTGATAAACGTGAGATGTTTTCGATC 399
|.||.||.||.||||||||.||....|||||.|||||.||||||||||||
RBAM_030450__ 350 TAACATCATTTTTCCCGATTTTAACGGATAAGCGTGAAATGTTTTCGATC 399
BSNT_04971___ 400 GGCGGGCAAGAGGTGACACTCGGCCAATTACTGACGTTTGCCGTATGTAC 449
|||||.||.|.|||.||.||||||||..|.||||||||||||||||||||
RBAM_030450__ 400 GGCGGTCAGGCGGTTACGCTCGGCCAGCTGCTGACGTTTGCCGTATGTAC 449
BSNT_04971___ 450 GATCTTGTTATGGGGAACGCACGCGATTCTTGTTGCCAGCATTAACGGCG 499
|.|.||.||||||||.||.|||.|||||||.||..|||||||||||||.|
RBAM_030450__ 450 GGTTTTATTATGGGGCACTCACACGATTCTCGTCACCAGCATTAACGGTG 499
BSNT_04971___ 500 CAAGTAAACTAAACTTTGTCACAACGCTTTCTAAAGTGTTAGGTTTTGTC 549
|.||||||.||||.||.|||||.|||.||||.|||||.|||||.|||.||
RBAM_030450__ 500 CGAGTAAATTAAATTTCGTCACGACGTTTTCAAAAGTATTAGGATTTATC 549
BSNT_04971___ 550 TTCTTTATCGTTGCCGGTTTATTTGTGTTTCAAACGGCATTATTCGGTCA 599
|||||||||.||||.|||||||||||||||||||||.|.||.||||.|||
RBAM_030450__ 550 TTCTTTATCATTGCAGGTTTATTTGTGTTTCAAACGTCGTTTTTCGATCA 599
BSNT_04971___ 600 TTTTTATTTCCCGGTTCAAGGAGAAAACGG-----CACAAGCATT----G 640
|||||||||.||||||| ||||.| |||| ||.| |
RBAM_030450__ 600 TTTTTATTTTCCGGTTC-------AAACAGGTCCTCACA--CAGTTGAGG 640
BSNT_04971___ 641 GAATTGGCGGCCAGGTTCATAACGCCGCGATTTCTACACTGTGGGCGTTT 690
||||.|||||.|||.|.||.||.||.||||||||.|||.|.||||||||.
RBAM_030450__ 641 GAATCGGCGGACAGATCCACAATGCGGCGATTTCAACATTATGGGCGTTC 690
BSNT_04971___ 691 GTCGGAATTGAATCCGCGGTGATCCTGTCCGGCCGTGCGCGCTCTCAGCG 740
||||||||||||||.||.||.||..|.|||||.||.||.||.||.|||||
RBAM_030450__ 691 GTCGGAATTGAATCGGCAGTCATTTTATCCGGGCGCGCCCGTTCGCAGCG 740
BSNT_04971___ 741 TGATGTGAAACGTGCGACAATTACCGGCTTGCTGATTGC-CTTGAGCATA 789
.||.||||||||.||.||.||||||||.||..||||.|| |||| ||||.
RBAM_030450__ 741 CGACGTGAAACGCGCCACCATTACCGGATTATTGATCGCGCTTG-GCATC 789
BSNT_04971___ 790 TATATTATTGTGACTTTAATTACGATGGGTGTTCTGCCGCATGATAAGCT 839
|||||.||.|||||.||.|||||||||||.||.||.|||||||.||||||
RBAM_030450__ 790 TATATCATCGTGACATTGATTACGATGGGCGTGCTTCCGCATGGTAAGCT 839
BSNT_04971___ 840 TGTCGGCTCTGAAAAACCATTTGTTGATGTACTCTATGCGATTGTTGGAA 889
|||||||||.||||||||.||||||||.|||.|.||.|||||.||.||.|
RBAM_030450__ 840 TGTCGGCTCGGAAAAACCGTTTGTTGACGTATTGTACGCGATCGTCGGCA 889
BSNT_04971___ 890 ACGCGGGAAGCGTGATTATGGCGCTTTTGGCTATCCTTTGTTTATTCGGA 939
|.||||||||.||.||.||||||.||.||||.||..|.|||.|.||||||
RBAM_030450__ 890 ATGCGGGAAGTGTCATCATGGCGATTCTGGCGATTTTGTGTCTGTTCGGA 939
BSNT_04971___ 940 ACGATGCTCGGCTGGATTTTGCTTGGCTCTGAGGTGCCATACCAAGCCGC 989
||||||||||||||||||.|.||.||||||||.||.||.||.|||||.||
RBAM_030450__ 940 ACGATGCTCGGCTGGATTCTTCTCGGCTCTGAAGTTCCGTATCAAGCGGC 989
BSNT_04971___ 990 TAAAGCAGGAGA-TTTCCCG--GCATTTTTTGCAAAAACGAATAAAAAGG 1036
.|||.||||||| ||||||| || |||||||||||||||||||.|||
RBAM_030450__ 990 GAAATCAGGAGACTTTCCCGCTGC---TTTTGCAAAAACGAATAAACAGG 1036
BSNT_04971___ 1037 GAAGTCCGGTCATTGCACTTATTATTACAAACGTCATGTCACAGGTCTTC 1086
||||.|||||..|..|..|.||..|.||.|||||.|||||||||.||||.
RBAM_030450__ 1037 GAAGCCCGGTTGTGTCGTTAATCGTAACGAACGTGATGTCACAGATCTTT 1086
BSNT_04971___ 1087 ATTTTCTCGGTTATTTCCCGGACAATAAGTGACGCATTTACATTTTTAAC 1136
||.||.||.||||||||||||||.||.||||||||.|||||.||||||||
RBAM_030450__ 1087 ATCTTTTCAGTTATTTCCCGGACGATCAGTGACGCGTTTACGTTTTTAAC 1136
BSNT_04971___ 1137 GACAGCGGCTACACTTGCATATTTAATTCCGTATCTGGTATCTGCAATCT 1186
|||||||||.||.||.||.|||.|.|||||||||||.||.||.||..|.|
RBAM_030450__ 1137 GACAGCGGCGACGCTCGCTTATCTGATTCCGTATCTCGTGTCAGCGTTTT 1186
BSNT_04971___ 1187 ACAGCTTGAAGGTAGTCATCAAAGGTGAAACGTATGACCAGCTGAAAGGC 1236
|||||.|||||.|..|..|.|..|||||||||||||||.||.|.||.||.
RBAM_030450__ 1187 ACAGCCTGAAGCTCATTTTTACGGGTGAAACGTATGACGAGATAAAGGGT 1236
BSNT_04971___ 1237 TCCCGTGTAAGAGACGGATTGATCGCGATACTGGCGTGTGCA--TACTCC 1284
||..|.|||||||||||..|.|||||.||.||.|| .|||| ||.||
RBAM_030450__ 1237 TCAAGAGTAAGAGACGGTATCATCGCCATCCTTGC--CTGCATTTATTC- 1283
BSNT_04971___ 1285 GTGTTT--GTTATCGTAACAGGCACAGCAGATTTAACGACATTTATCCTC 1332
|.||| ||.||..|.||.||.||.||.|||||||||||.|||||.|||
RBAM_030450__ 1284 -TTTTTACGTCATTATTACCGGAACGGCCGATTTAACGACCTTTATTCTC 1332
BSNT_04971___ 1333 GGCATCGGTTTATTCTTTGTCGGCTTAATCGTT-TATCCATTTGTGAGTA 1381
||.|||||..|.|||||.|||||.||..| ||| |||||.||.||....|
RBAM_030450__ 1333 GGTATCGGGCTGTTCTTCGTCGGTTTGCT-GTTATATCCTTTCGTCTCAA 1381
BSNT_04971___ 1382 A-AAAGTTCCAGAAAGAA-AAACAA---GCATAA 1410
| |||.||.| |||.|| |.|||| |.||.|
RBAM_030450__ 1382 AGAAATTTGC--AAACAACAGACAATCGGTATGA 1413
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