Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04932 and RBAM_030250

See Amino acid alignment / Visit BSNT_04932 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:28
# Commandline: needle
#    -asequence dna-align/BSNT_04932___yvqH.1.9828.seq
#    -bsequence dna-align/RBAM_030250___yvqH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04932___yvqH-RBAM_030250___yvqH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04932___yvqH-RBAM_030250___yvqH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04932___yvqH
# 2: RBAM_030250___yvqH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 705
# Identity:     535/705 (75.9%)
# Similarity:   535/705 (75.9%)
# Gaps:          54/705 ( 7.7%)
# Score: 2013.0
# 
#
#=======================================

BSNT_04932___      1 ATGGTATTAAAAAGAATCAGAGATATGTTTGTTGCGTCAGTTCATGAAGG     50
                     |||||.|||||||||||.|||.|||||||.||.||.||.|||.|.|||||
RBAM_030250__      1 ATGGTCTTAAAAAGAATAAGAAATATGTTCGTCGCATCTGTTAACGAAGG     50

BSNT_04932___     51 ACTTGATAAAATGGAGAATCCAAAGGTGATGCTGAATCAATATGTACGCG    100
                     .|||||||||.|.||.|||||.||.||.|||||||||||||||||.||.|
RBAM_030250__     51 GCTTGATAAATTAGAAAATCCGAAAGTCATGCTGAATCAATATGTGCGTG    100

BSNT_04932___    101 ATATGGAAAGCGACATCGCAAAAGCAAAGCAAACAATTGTGAAACAGCAC    150
                     ||||||||||.||||||||.||.||.||.|||||||||||.|||||||||
RBAM_030250__    101 ATATGGAAAGTGACATCGCTAAGGCGAAACAAACAATTGTCAAACAGCAC    150

BSNT_04932___    151 ACGATTGCCTATCAATTTAAGAAAAAATATGAAGAAGCCGCTGAAGTGGC    200
                     |||||.|.|.||||.||||||||||||.|.|||||.|||.|.|||..|||
RBAM_030250__    151 ACGATCGTCCATCAGTTTAAGAAAAAACAGGAAGACGCCTCCGAAACGGC    200

BSNT_04932___    201 TGGC-AAACGGAAAAATCAGGCACAGCTCGCATTTGACGCGGGTGAAGAA    249
                      ||| |||||||||||.|||||.|||||.||.||.|||||.||.|||||.
RBAM_030250__    201 -GGCAAAACGGAAAAACCAGGCTCAGCTTGCTTTCGACGCCGGGGAAGAG    249

BSNT_04932___    250 GAACTGGCGAAAAAGGCGCTGACTGAAATGAAGTATTTAGAAGGGAAGGC    299
                     ||.|||||||||||||||||||||||||||||.||..|.||.||.||.||
RBAM_030250__    250 GAGCTGGCGAAAAAGGCGCTGACTGAAATGAAATACCTTGAGGGAAAAGC    299

BSNT_04932___    300 GGCTGAGCAT---AAAGCTTCCTATGAACAGGC--AAACAGTCAGCTGGC    344
                     |||.||.|||   ||||   |.|||||.|||||  |||||  ||||||||
RBAM_030250__    300 GGCCGAACATGAAAAAG---CGTATGAGCAGGCGAAAACA--CAGCTGGC    344

BSNT_04932___    345 TGATCTGAAAGAGCAGCTGGCTGCACTT--GAAACAAAGCTTCAGGACGT    392
                     .||.||||||||||||||||  ..||||  |||||....||||..|||||
RBAM_030250__    345 AGAGCTGAAAGAGCAGCTGG--AAACTTTAGAAACGCGCCTTCGCGACGT    392

BSNT_04932___    393 AAAGGATAAAAAACAGGCGCTGATTGCGCGGGCAAATGCGGCGAAAGCTA    442
                     |||||||||||||||||||||.||.||.||.||.||.|||||.||.||.|
RBAM_030250__    393 AAAGGATAAAAAACAGGCGCTCATCGCCCGCGCGAACGCGGCAAATGCGA    442

BSNT_04932___    443 AAGAGCATATGAATACGACATTTGACAAAATTGACAGTGAAAGCGCGTAT    492
                     |.||.||||||||..|..|.||.||||||||||||||.||||||||.||.
RBAM_030250__    443 AGGAACATATGAACGCTTCTTTCGACAAAATTGACAGCGAAAGCGCCTAC    492

BSNT_04932___    493 CGTGAATTTTTACGTGTTGAAAATCGTATTGAAGAAATGGAAATCCGCGC    542
                     .|.||.||..|.||..|.||||..||.|||||||||||||||.|||||| 
RBAM_030250__    493 AGAGAGTTCCTTCGAATGGAAAGCCGCATTGAAGAAATGGAAGTCCGCG-    541

BSNT_04932___    543 GAATTATTCAAA--------GTCAGCGGAAGCCGGCG----CAGAACTTA    580
                            |||||        .|||||.||    ||||    |||||  ||
RBAM_030250__    542 -------TCAAATACGGCACTTCAGCTGA----GGCGAACACAGAA--TA    578

BSNT_04932___    581 CA------CGTAAAGAATTCGCAGACGATGTGGAAGCAGAGATTGAAAAA    624
                     ||      |..||  .|||  |||||||.||||||||.||||||||||||
RBAM_030250__    579 CAGCCGCTCCCAA--TATT--CAGACGAGGTGGAAGCTGAGATTGAAAAA    624

BSNT_04932___    625 ATGCGGACACTTTCACTGCAAAAATCAGACCAGAC-ACAAGCGGCAAATG    673
                     |||||..|.|||||.|||.|||||.||||.| |.| |.|||||||..|||
RBAM_030250__    625 ATGCGCTCGCTTTCTCTGGAAAAAACAGAGC-GTCAAAAAGCGGCTCATG    673

BSNT_04932___    674 AATAA    678
                     |||||
RBAM_030250__    674 AATAA    678


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