Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04932 and RBAM_030250
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:28
# Commandline: needle
# -asequence dna-align/BSNT_04932___yvqH.1.9828.seq
# -bsequence dna-align/RBAM_030250___yvqH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04932___yvqH-RBAM_030250___yvqH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04932___yvqH-RBAM_030250___yvqH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04932___yvqH
# 2: RBAM_030250___yvqH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 705
# Identity: 535/705 (75.9%)
# Similarity: 535/705 (75.9%)
# Gaps: 54/705 ( 7.7%)
# Score: 2013.0
#
#
#=======================================
BSNT_04932___ 1 ATGGTATTAAAAAGAATCAGAGATATGTTTGTTGCGTCAGTTCATGAAGG 50
|||||.|||||||||||.|||.|||||||.||.||.||.|||.|.|||||
RBAM_030250__ 1 ATGGTCTTAAAAAGAATAAGAAATATGTTCGTCGCATCTGTTAACGAAGG 50
BSNT_04932___ 51 ACTTGATAAAATGGAGAATCCAAAGGTGATGCTGAATCAATATGTACGCG 100
.|||||||||.|.||.|||||.||.||.|||||||||||||||||.||.|
RBAM_030250__ 51 GCTTGATAAATTAGAAAATCCGAAAGTCATGCTGAATCAATATGTGCGTG 100
BSNT_04932___ 101 ATATGGAAAGCGACATCGCAAAAGCAAAGCAAACAATTGTGAAACAGCAC 150
||||||||||.||||||||.||.||.||.|||||||||||.|||||||||
RBAM_030250__ 101 ATATGGAAAGTGACATCGCTAAGGCGAAACAAACAATTGTCAAACAGCAC 150
BSNT_04932___ 151 ACGATTGCCTATCAATTTAAGAAAAAATATGAAGAAGCCGCTGAAGTGGC 200
|||||.|.|.||||.||||||||||||.|.|||||.|||.|.|||..|||
RBAM_030250__ 151 ACGATCGTCCATCAGTTTAAGAAAAAACAGGAAGACGCCTCCGAAACGGC 200
BSNT_04932___ 201 TGGC-AAACGGAAAAATCAGGCACAGCTCGCATTTGACGCGGGTGAAGAA 249
||| |||||||||||.|||||.|||||.||.||.|||||.||.|||||.
RBAM_030250__ 201 -GGCAAAACGGAAAAACCAGGCTCAGCTTGCTTTCGACGCCGGGGAAGAG 249
BSNT_04932___ 250 GAACTGGCGAAAAAGGCGCTGACTGAAATGAAGTATTTAGAAGGGAAGGC 299
||.|||||||||||||||||||||||||||||.||..|.||.||.||.||
RBAM_030250__ 250 GAGCTGGCGAAAAAGGCGCTGACTGAAATGAAATACCTTGAGGGAAAAGC 299
BSNT_04932___ 300 GGCTGAGCAT---AAAGCTTCCTATGAACAGGC--AAACAGTCAGCTGGC 344
|||.||.||| |||| |.|||||.||||| ||||| ||||||||
RBAM_030250__ 300 GGCCGAACATGAAAAAG---CGTATGAGCAGGCGAAAACA--CAGCTGGC 344
BSNT_04932___ 345 TGATCTGAAAGAGCAGCTGGCTGCACTT--GAAACAAAGCTTCAGGACGT 392
.||.|||||||||||||||| ..|||| |||||....||||..|||||
RBAM_030250__ 345 AGAGCTGAAAGAGCAGCTGG--AAACTTTAGAAACGCGCCTTCGCGACGT 392
BSNT_04932___ 393 AAAGGATAAAAAACAGGCGCTGATTGCGCGGGCAAATGCGGCGAAAGCTA 442
|||||||||||||||||||||.||.||.||.||.||.|||||.||.||.|
RBAM_030250__ 393 AAAGGATAAAAAACAGGCGCTCATCGCCCGCGCGAACGCGGCAAATGCGA 442
BSNT_04932___ 443 AAGAGCATATGAATACGACATTTGACAAAATTGACAGTGAAAGCGCGTAT 492
|.||.||||||||..|..|.||.||||||||||||||.||||||||.||.
RBAM_030250__ 443 AGGAACATATGAACGCTTCTTTCGACAAAATTGACAGCGAAAGCGCCTAC 492
BSNT_04932___ 493 CGTGAATTTTTACGTGTTGAAAATCGTATTGAAGAAATGGAAATCCGCGC 542
.|.||.||..|.||..|.||||..||.|||||||||||||||.||||||
RBAM_030250__ 493 AGAGAGTTCCTTCGAATGGAAAGCCGCATTGAAGAAATGGAAGTCCGCG- 541
BSNT_04932___ 543 GAATTATTCAAA--------GTCAGCGGAAGCCGGCG----CAGAACTTA 580
||||| .|||||.|| |||| ||||| ||
RBAM_030250__ 542 -------TCAAATACGGCACTTCAGCTGA----GGCGAACACAGAA--TA 578
BSNT_04932___ 581 CA------CGTAAAGAATTCGCAGACGATGTGGAAGCAGAGATTGAAAAA 624
|| |..|| .||| |||||||.||||||||.||||||||||||
RBAM_030250__ 579 CAGCCGCTCCCAA--TATT--CAGACGAGGTGGAAGCTGAGATTGAAAAA 624
BSNT_04932___ 625 ATGCGGACACTTTCACTGCAAAAATCAGACCAGAC-ACAAGCGGCAAATG 673
|||||..|.|||||.|||.|||||.||||.| |.| |.|||||||..|||
RBAM_030250__ 625 ATGCGCTCGCTTTCTCTGGAAAAAACAGAGC-GTCAAAAAGCGGCTCATG 673
BSNT_04932___ 674 AATAA 678
|||||
RBAM_030250__ 674 AATAA 678
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