Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04926 and RBAM_030220
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:28
# Commandline: needle
# -asequence dna-align/BSNT_04926___yvqE.1.9828.seq
# -bsequence dna-align/RBAM_030220___yvqE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04926___yvqE-RBAM_030220___yvqE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04926___yvqE-RBAM_030220___yvqE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04926___yvqE
# 2: RBAM_030220___yvqE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1121
# Identity: 825/1121 (73.6%)
# Similarity: 825/1121 (73.6%)
# Gaps: 76/1121 ( 6.8%)
# Score: 3074.0
#
#
#=======================================
BSNT_04926___ 1 ATGAGAAAAAAAATGCTTGCCAGCCTCCAATGGCGCGCCATCCGCATGAC 50
|||||.||||||.|.||.||||...|.||.|||||||||||.||.|||||
RBAM_030220__ 1 ATGAGGAAAAAATTACTCGCCAATATTCAGTGGCGCGCCATGCGGATGAC 50
BSNT_04926___ 51 AACGGGAATCAGCCTGCTCCTTTTTGC-CTGCCTGATTTCCTTTATGATG 99
..|||||.||||.||||||||||..|| .|| .|.|||.|..|.|||.||
RBAM_030220__ 51 CGCGGGACTCAGTCTGCTCCTTTGCGCGGTG-TTTATTACGCTGATGCTG 99
BSNT_04926___ 100 TTTTACTATCGGCTCGATCCGCT-----TGTTTTGCTGTCATCTAGCTGG 144
.|.||.||..||||.||.|||.| ||||| ||.||..|||||
RBAM_030220__ 100 CTGTATTACGGGCTTGACCCGATGCTGCTGTTT-----TCTTCCGGCTGG 144
BSNT_04926___ 145 TTCGGAATTCCGTTTATCCTGATTTTGCTTCTGATCAGCGTGACCGTCGG 194
|||||.|||||||||.|..||||..|.|||||| .||||..
RBAM_030220__ 145 TTCGGTATTCCGTTTGTGGTGATCCTTCTTCTG----------GCGTCTC 184
BSNT_04926___ 195 TTTCGCC----------TCAGGGTATATGTACGGCAACCGGTTGAAGACA 234
|||||.| ||.||.|||.|.||||||..|||..||||.|||
RBAM_030220__ 185 TTTCGGCGGGATTGATTTCCGGTTATGTATACGGCGGCCGCCTGAAAACA 234
BSNT_04926___ 235 AGGATTGATACATTAATTGAATCCATTTTAACCTTTGAAAACGGCAATTT 284
||.||.||||||.|.||||||.|..||||.|..|||||||||||||||||
RBAM_030220__ 235 AGAATGGATACACTGATTGAAGCGGTTTTGAAATTTGAAAACGGCAATTT 284
BSNT_04926___ 285 CGCTTATCGGATACCGCCGCTCGGTGATGATGAAATCGGCCTGGCTGCTG 334
.|||||||||.|.|||||||||||.||||||||||||||.|||||.||.|
RBAM_030220__ 285 TGCTTATCGGGTGCCGCCGCTCGGCGATGATGAAATCGGTCTGGCGGCAG 334
BSNT_04926___ 335 ATCAGCTGAACGAAATGGCGAAGCGCGTGGAACTTCAAGTCGCATCCCTC 384
|.|||||.|||||||||||.|||||.||.||.||.||.||..||||.||.
RBAM_030220__ 335 ACCAGCTCAACGAAATGGCCAAGCGGGTCGAGCTCCAGGTTACATCGCTG 384
BSNT_04926___ 385 CAGAAACTTTCCAATGAACGTGCGGAATGGCAGGCTCAAATGAAGAAGTC 434
||.||.||.|||||.||.||.|||||||||||||.|||||||||.||.||
RBAM_030220__ 385 CAAAAGCTCTCCAACGAGCGGGCGGAATGGCAGGATCAAATGAAAAAATC 434
BSNT_04926___ 435 GGTTATCTCAGAAGAACGCCAGCGATTGGCCAGAGATCTTCATGATGCGG 484
.||.|||.|.||||||||||||||..||||..|.|||||.||.|||||.|
RBAM_030220__ 435 AGTCATCACTGAAGAACGCCAGCGGCTGGCGCGCGATCTGCACGATGCCG 484
BSNT_04926___ 485 TCAGCCAGCAGCTCTTTGCCATATCGATGATGACATCAGCCGTGCTGGAA 534
||||||||||||||||||||||.||.|||||||||||.|||||..|.||.
RBAM_030220__ 485 TCAGCCAGCAGCTCTTTGCCATTTCTATGATGACATCCGCCGTCTTAGAG 534
BSNT_04926___ 535 CATGTCAAGGATGCTGATGACAAAACAGTCAAGCGGATCAGGATGGTCGA 584
||.||.||.|||||.||||||||||..|||||.||.||..|.|||||.||
RBAM_030220__ 535 CAGGTGAAAGATGCGGATGACAAAATCGTCAAACGAATTCGCATGGTTGA 584
BSNT_04926___ 585 GCATATGGCAGGCGAAGCCCAAAATGAGATGAGGGCGCTGCTGCTCCATT 634
.||||||||.||.|||||.|||||.||||||||.|||||||||.|.||||
RBAM_030220__ 585 ACATATGGCGGGGGAAGCGCAAAACGAGATGAGAGCGCTGCTGTTGCATT 634
BSNT_04926___ 635 TACGGCCTGTTACCCTTGAAGGAAAAGGGCTGAAGGAGGGCCTTACGGAG 684
|.|||||.||.||..|.|||||||||||..|.||.||.||.||.|..|||
RBAM_030220__ 635 TGCGGCCCGTCACTTTAGAAGGAAAAGGCTTAAAAGAAGGGCTGATTGAG 684
BSNT_04926___ 685 CTTTTGGACGAGTTCCGAAAA---AAGCAGCCGATTGATATTGAGTGGGA 731
||.||..|.|||||| ||| |||||||||.|.||||||||||||||
RBAM_030220__ 685 CTGTTAAAAGAGTTC---AAAGCGAAGCAGCCGCTGGATATTGAGTGGGA 731
BSNT_04926___ 732 TATACAGGACACAGCGATA--------TCCAAGGGTGTTGAAGACCACTT 773
.|| |||||||| ||.||.||.|||||||||||..|
RBAM_030220__ 732 CAT--------CAGCGATACGGGTGTGTCAAAAGGCGTTGAAGACCATCT 773
BSNT_04926___ 774 GTTCAGAATCGTGCAGGAGGCCCTTTCAAACGTATTTAGACATTCAAAAG 823
||||.|.||||||||||||||.|||||.|||||.||.|||||||||||.|
RBAM_030220__ 774 GTTCCGCATCGTGCAGGAGGCGCTTTCCAACGTTTTCAGACATTCAAAGG 823
BSNT_04926___ 824 CGTCAAAAGTAACCGTGATTCTAGG-------CATAAAGAACAGCCAGCT 866
||.|.||.||.|||||.|..||.|| |||.||.|| ||
RBAM_030220__ 824 CGACCAAGGTCACCGTCAGGCTCGGCGCGAAACATCAAAAA-------CT 866
BSNT_04926___ 867 CCGTCTGAAGGTGATTGATAATGGAAAAGGC----TTTAAAATGGACCAG 912
.|..||.||.||.||||||||.|| ||| ||||..|||||.||.
RBAM_030220__ 867 TCAGCTTAAAGTCATTGATAACGG----GGCGGGTTTTACGATGGATCAA 912
BSNT_04926___ 913 GTGAAAGCATCCTCATACGGATTGAATTCTATGAAAGAACGTGCAAGTGA 962
||||||||||||||||||||..||.||||.||.||.|||.|.||.|||||
RBAM_030220__ 913 GTGAAAGCATCCTCATACGGCCTGCATTCCATCAAGGAAAGAGCGAGTGA 962
BSNT_04926___ 963 AATCGGCGGGGTCGCCGAAGTGATTTCAGTAGAAGGAAAAGGCACCCAAA 1012
|||||||||..|.||.|||.|.||.||.|||.|.|||||||||||.||.|
RBAM_030220__ 963 AATCGGCGGCATAGCGGAAATTATCTCCGTAAAGGGAAAAGGCACGCAGA 1012
BSNT_04926___ 1013 TCGAAGTGAAGGTCCCGATTTTCCCGGAAGAAAAAGGAGAGAACGAACGT 1062
||||.|||||.||||||||||..|.|.||..||||||||||||||||.||
RBAM_030220__ 1013 TCGACGTGAAAGTCCCGATTTATCAGAAAACAAAAGGAGAGAACGAAAGT 1062
BSNT_04926___ 1063 GATTCGAGTATTATTGATTGA 1083
|||||||||.|||.|||||||
RBAM_030220__ 1063 GATTCGAGTGTTACTGATTGA 1083
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