Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04915 and RBAM_030130
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:26
# Commandline: needle
# -asequence dna-align/BSNT_04915___cssS.1.9828.seq
# -bsequence dna-align/RBAM_030130___cssS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04915___cssS-RBAM_030130___cssS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04915___cssS-RBAM_030130___cssS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04915___cssS
# 2: RBAM_030130___cssS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1372
# Identity: 1080/1372 (78.7%)
# Similarity: 1080/1372 (78.7%)
# Gaps: 32/1372 ( 2.3%)
# Score: 4154.0
#
#
#=======================================
BSNT_04915___ 1 ATGAAAAACAAGCCGCTCGCGTTTCAGATATGGGTTGTCATATCCGGCAT 50
||||||||.||||||||.||.|||||.||||||||.|||||.||.|||||
RBAM_030130__ 1 ATGAAAAATAAGCCGCTTGCTTTTCAAATATGGGTGGTCATCTCAGGCAT 50
BSNT_04915___ 51 CCTGTTAGCGATATCGATTTTACTGCTTGTGTTATTTTCAAACACGCTGC 100
|||.|||||.||.||||||.|.||.||.|||.|.||.|||||.|||||||
RBAM_030130__ 51 CCTCTTAGCCATTTCGATTCTGCTTCTCGTGCTGTTCTCAAATACGCTGC 100
BSNT_04915___ 101 GAGATTTTTTCACTAATGAAACGTATACGACGATTGAAAATGAGCAGCAT 150
|..||||||||||..||||||||||||||||.|||||||||||.||||||
RBAM_030130__ 101 GTAATTTTTTCACGGATGAAACGTATACGACCATTGAAAATGAACAGCAT 150
BSNT_04915___ 151 GTTCTGACAGAGTACCGCCTGCCAGGTTCGATTGAAAGGCGCTATTACAG 200
||.|||||.||||||||.|||||.||.|||||.||..||.|.||||||||
RBAM_030130__ 151 GTACTGACGGAGTACCGGCTGCCCGGGTCGATCGAGCGGGGATATTACAG 200
BSNT_04915___ 201 CGAGGAAGCGACGGCGCCGACAACTGTCCGCTCCGTACAGCACGTGCTCC 250
||||||.|||||.||.|||||.|||.||||.|||||.||||||||.||.|
RBAM_030130__ 201 CGAGGATGCGACCGCTCCGACGACTTTCCGATCCGTTCAGCACGTTCTTC 250
BSNT_04915___ 251 TTCCTGAAA----ATGAAGAGGCTTCTTCA--GACAAGGATTTAAGCATT 294
|.|| |.|| |.|||..||| || |||||.||.||.|.| |.
RBAM_030130__ 251 TGCC-GCAACGGGAGGAATCGGC-----CAGTGACAAAGACTTGAAC-TA 293
BSNT_04915___ 295 C-TGTCATCTTCATTTATCCACAAGGTGTACAAGCTGGCTGATCAGCAGG 343
| |.||.|||||.||||||||.||||||||||||||.||.|..|..|||.
RBAM_030130__ 294 CTTTTCTTCTTCCTTTATCCATAAGGTGTACAAGCTCGCGGGCCGCCAGC 343
BSNT_04915___ 344 A-AGC-TAAAAAGAAACGTTACAGCGCCGACGTCAATGGAGAGAAAGTGT 391
| ||| | .|.||||||.||||||||.|||.|||..||.||.|||||.|
RBAM_030130__ 344 ACAGCGT--CACGAAACGATACAGCGCGGACATCAGCGGTGAAAAAGTAT 391
BSNT_04915___ 392 TTTTTGTCATTAAAAAGGGACTTTCCGTCAATGGACA--ATCAGCGATGA 439
||||.|||||||||||.||.||..||.|.||.||.|| || |||||||
RBAM_030130__ 392 TTTTCGTCATTAAAAAAGGCCTCACCATTAACGGCCAGGAT--GCGATGA 439
BSNT_04915___ 440 TGCTCTCTTACGCGCTTGATTCTTATCGGGACGATTTGGCCTATACCTTA 489
||||.||||||||.||||||||||||||.||.|||.||||.||.|||.|.
RBAM_030130__ 440 TGCTGTCTTACGCCCTTGATTCTTATCGTGATGATCTGGCATACACCCTG 489
BSNT_04915___ 490 TTCAAACAGCTTCTGTTTATTATAGCTGTCGTCATTTTATTAAGCTGGAT 539
|||||.|||||.||.|||||.||.||.|.|||.|||||.|||||||||||
RBAM_030130__ 490 TTCAAGCAGCTGCTCTTTATCATTGCCGGCGTGATTTTGTTAAGCTGGAT 539
BSNT_04915___ 540 TCCGGCTATTTGGCTTGCAAAGTATTTATCAAGGCCTCTTGTATCATTTG 589
||||||.|||||||||||.||.|||.|.||..|.||.||.||.||.||.|
RBAM_030130__ 540 TCCGGCGATTTGGCTTGCCAAATATCTCTCGCGCCCGCTCGTTTCCTTAG 589
BSNT_04915___ 590 AAAAACACGTCAAACGGATTTCTGAACAGGATTGGGATGACCCAGTAAAA 639
|.||.||.||||||||||||||..||||||||||||||||.||.||.|..
RBAM_030130__ 590 AGAAGCATGTCAAACGGATTTCAAAACAGGATTGGGATGATCCGGTCATC 639
BSNT_04915___ 640 GTGGACCGGAAAGATGAAATCGGAAAATTGGGCCATACCATCGAAGAGAT 689
||.|||.|.|||||.||||||||||||||.|||||||||||.|||||.||
RBAM_030130__ 640 GTCGACAGAAAAGACGAAATCGGAAAATTAGGCCATACCATTGAAGACAT 689
BSNT_04915___ 690 GCGCCAAAAGCTTGTGCAAAAGGATGAAACAGAAAGAACTCTATTGCAAA 739
|||....|||||.||||||||.||.|||||.||||||||.||..||||||
RBAM_030130__ 690 GCGGAGCAAGCTGGTGCAAAAAGACGAAACGGAAAGAACGCTCCTGCAAA 739
BSNT_04915___ 740 ATATCTCTCATGATTTAAAAACGCCGGTCATGGTCATCAGAGGCTATACA 789
|||||||||||||||||||||||||.||||||||.||.||.||||||||.
RBAM_030130__ 740 ATATCTCTCATGATTTAAAAACGCCTGTCATGGTGATAAGGGGCTATACT 789
BSNT_04915___ 790 CAATCAATTAAAGACGGGATTTTTCCTAAAGGAGACCTTGAAAACACTGT 839
||||||||.||.|||||||||||||||||.||.||.||.||||.|||..|
RBAM_030130__ 790 CAATCAATAAAGGACGGGATTTTTCCTAAGGGGGATCTGGAAACCACAAT 839
BSNT_04915___ 840 AGATGTTATTGAATGCGAAGCTCTTAAGCTGGAGAAAAAAATAAAGGATT 889
.|||||.||||||.|||||||....||.||.|||||.|||||.|||||||
RBAM_030130__ 840 TGATGTCATTGAAGGCGAAGCAGAAAAACTTGAGAAGAAAATTAAGGATT 889
BSNT_04915___ 890 TATTATATTTAACGAAGCTGGATTATTTAGCGAAGCAAAAAGTGCAGCA- 938
|||||||||||||||||||.|||||||||..||||||....|||||.||
RBAM_030130__ 890 TATTATATTTAACGAAGCTTGATTATTTAATGAAGCAGCGGGTGCACCAT 939
BSNT_04915___ 939 -CGACATGTTCAGTATTGTAGAA-GTGACAGAAGAAGTCATCGAACGATT 986
.||||| ||.| .||||| ||| ||.||.|||||||||||.|||||..|
RBAM_030130__ 940 GAGACAT-TTGA-CATTGT-GAAGGTCACGGAAGAAGTCATTGAACGGCT 986
BSNT_04915___ 987 GAAGTGGGCGCGGAAAGAACTATCGTGGGAAATTGATGTAGAAGA-GGAT 1035
.||.|||||.|||||.|||.||||||||....||||...|||||| |.||
RBAM_030130__ 987 CAAATGGGCCCGGAAGGAATTATCGTGGACCGTTGAAACAGAAGATGCAT 1036
BSNT_04915___ 1036 ATTTTGATGCCGGGCGATCCGGAGCAATGGAACAAACTCCTCGAAAACAT 1085
|..|||||||.||.||||||||.|||||||.||||||.||.||||||||
RBAM_030130__ 1037 -TAATGATGCCCGGTGATCCGGAACAATGGAGCAAACTTCTTGAAAACAT 1085
BSNT_04915___ 1086 TCTGGAAAATCAAATCCGCTATGCTGAGACAAAAATAGAAATCAGCATGA 1135
|||.||||||||||||||||||||.||.||....||..|.||..|.||.|
RBAM_030130__ 1086 TCTCGAAAATCAAATCCGCTATGCAGAAACGGCGATTCACATTCGGATCA 1135
BSNT_04915___ 1136 AACAAGATGATCGAAATATCGTGATCACCATTAAAAATGACGGTCCGCAT 1185
..|||.||.|.|...|.||.||.||.||..||.||||||||||.||.|..
RBAM_030130__ 1136 GGCAAAATCAGCAGCAGATTGTCATGACGGTTGAAAATGACGGGCCTCCG 1185
BSNT_04915___ 1186 ATTGAAGATGAGATGCTCTCCAGCCTCTATGAGCCTTTTAATAAAGGGAA 1235
|||||.|||||||||||.||||||.|.||.||||||||||||||||||||
RBAM_030130__ 1186 ATTGAGGATGAGATGCTATCCAGCTTGTACGAGCCTTTTAATAAAGGGAA 1235
BSNT_04915___ 1236 GAAAGGCGAATTCGGCATTGGTCTAAGCATCGTAAAACGAATTTTAACTC 1285
|||||||||.||||||||.||.||.||||||||||||||.||||||||.|
RBAM_030130__ 1236 GAAAGGCGAGTTCGGCATAGGACTCAGCATCGTAAAACGGATTTTAACCC 1285
BSNT_04915___ 1286 TTCATAAGGCATCTATCTCAATTGAAAATGACAAAACGGGTGTAACATAC 1335
|.|||||.|||||.||.|||||||||||||||.||.|||||||||..|||
RBAM_030130__ 1286 TGCATAAAGCATCAATTTCAATTGAAAATGACCAATCGGGTGTAATCTAC 1335
BSNT_04915___ 1336 CGCA-TAGCAGTGCCAAAATAG 1356
||.| ||.|| |.|||||.|||
RBAM_030130__ 1336 CGAATTATCA-TACCAAAGTAG 1356
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