Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04883 and RBAM_030010
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:25
# Commandline: needle
# -asequence dna-align/BSNT_04883___yusT.1.9828.seq
# -bsequence dna-align/RBAM_030010___yusT.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04883___yusT-RBAM_030010___yusT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04883___yusT-RBAM_030010___yusT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04883___yusT
# 2: RBAM_030010___yusT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 933
# Identity: 625/933 (67.0%)
# Similarity: 625/933 (67.0%)
# Gaps: 102/933 (10.9%)
# Score: 1993.5
#
#
#=======================================
BSNT_04883___ 1 ATGGAAAGCGGAGATTTACGTGTGTTTCAAATGGTAGCTCGTGAAGGAAC 50
|||||||||||||||||.||..|.|||||.|||||.||.||||||||..|
RBAM_030010__ 1 ATGGAAAGCGGAGATTTGCGAATTTTTCAGATGGTGGCCCGTGAAGGTTC 50
BSNT_04883___ 51 CATTACGAAAGCAGCCCTGCAGCTTGGCTATGTACAATCGAATGTCACGG 100
||||||.||.||.||...||..||.||||||||.||.||.||.||.||||
RBAM_030010__ 51 CATTACAAAGGCGGCTGCGCGTCTCGGCTATGTGCAGTCAAACGTGACGG 100
BSNT_04883___ 101 CCAGAATTCAGCAATTGGAAG------------CTGAGCTGGGTACCACA 138
|||||||.|..||..|||||| |||||
RBAM_030010__ 101 CCAGAATCCGCCAGCTGGAAGAAGATTTGAAAACTGAG------------ 138
BSNT_04883___ 139 CTGTTTTTGCGCCATAATCGGGGCATGACACTTTCTGCAAGCGGAAAATT 188
||||||||.||||||||.||.||.|||||.||.|||.|||||||.|...|
RBAM_030010__ 139 CTGTTTTTCCGCCATAACCGCGGGATGACGCTGTCTTCAAGCGGCACGGT 188
BSNT_04883___ 189 GCTGCTGGACTACGCAAATAAAATTATCGGCCTGCTTGATGAAGCGTCTA 238
|||.||..|.||.||..||.|..|..||||.|||.|.||.||||| |.|
RBAM_030010__ 189 GCTCCTCCATTATGCGGATCAGGTCGTCGGTCTGATAGAAGAAGC--CAA 236
BSNT_04883___ 239 AA--GCGCTCTCATCCTCCG-CAGAACCAAGCGGGTCGCTTATGATCGGC 285
|| ||||||.|.||..|.| || |.||||||||..||||||||||||||
RBAM_030010__ 237 AATGGCGCTCGCTTCAACAGACA-AGCCAAGCGGACCGCTTATGATCGGC 285
BSNT_04883___ 286 TCCACTCAGACTACCGCCGCGGTAAGGCTTCCAAAGCTCCTGGCATCTTA 335
|||||.|||||.||.|||||.||.|||||.||.||.||..|.||.|||||
RBAM_030010__ 286 TCCACCCAGACAACAGCCGCCGTCAGGCTGCCGAAACTTTTAGCCTCTTA 335
BSNT_04883___ 336 TTATGAAGAACATCCAAACGTCCAGCTATCTTTAACAACAGGACATACGC 385
.|||||.....||||..|.||..||||.||..|.||.|||||||||||.|
RBAM_030010__ 336 CTATGAGCGGTATCCTGATGTGGAGCTGTCCCTTACGACAGGACATACAC 385
BSNT_04883___ 386 AATTTCT--CCTTGATAAAGTTCTTCGTTATGAATTGGATGGCGCGTTTA 433
|||.|.| || ||||||||||||||.|||||||||||.|||||.||||
RBAM_030010__ 386 AATATGTAACC--GATAAAGTTCTTCGCTATGAATTGGACGGCGCATTTA 433
BSNT_04883___ 434 TCGGATGCGAATGCCATCATCCTGAGCTCGAATCCTAT-CCTGCGTTTGA 482
||||.||..|.|..||||||||.||..|..|.||| || ||.||.|||||
RBAM_030010__ 434 TCGGCTGTCACTTTCATCATCCGGATTTGCACTCC-ATCCCGGCCTTTGA 482
BSNT_04883___ 483 GGAAGAACCAGTAGTTGT---TTCGGCTGCCTCCGTGCCCGATGTTGAGG 529
.||||||.|.||.||.|| |.|.|||| ||||..|||.|.|.||.|
RBAM_030010__ 483 AGAAGAAGCCGTTGTCGTGACTCCCGCTG---CCGTCACCGCTATAGAAG 529
BSNT_04883___ 530 AAGCCATCACAAAGCCGATTCTCGTTTACAGCACAGGCTGTTCGTATCGA 579
||||..|.|.|||||||.||||.||.||||||||.|||||..|||||||.
RBAM_030010__ 530 AAGCGGTAAAAAAGCCGCTTCTTGTGTACAGCACGGGCTGCACGTATCGT 579
BSNT_04883___ 580 GAAACACTTGAAAAATGGCTGCGTTCCGT-----CGGTGTCACACAGCCG 624
||.|||.|.||....|||||.|.||||.| ||| |.||.|||
RBAM_030010__ 580 GACACATTAGAGCGGTGGCTTCATTCCATTGGAACGG-----CGCATCCG 624
BSNT_04883___ 625 GTCATTATGGAATTTGGGACGCTTGAAGCAATTATCGGCGGGGTTACAGC 674
|.||||||||||||.||.||.||||||||.||||||||.||.||.|||||
RBAM_030010__ 625 GCCATTATGGAATTCGGCACCCTTGAAGCGATTATCGGGGGAGTGACAGC 674
BSNT_04883___ 675 AGGTCTTGGCATCTCGTTGCTGCCAAGAACGG---TTGTGCAGAAACATG 721
.||.||.|||||..||.||||.||..|||..| ||...||| ||.|
RBAM_030010__ 675 GGGGCTCGGCATTACGCTGCTCCCGCGAAGCGTAATTACTCAG---CACG 721
BSNT_04883___ 722 AAGCAGAAGGATCAATTC-GAT-TGTACCCGCTGCCTGAAGCGCTCAGCC 769
..|||..|||..|..||| ||| ||.||| .|.||.|||.|..|||||.
RBAM_030010__ 722 CCGCACTAGGCGCGGTTCGGATATGGACC--ATTCCCGAATCTTTCAGCA 769
BSNT_04883___ 770 AGATGAAAACAGAGTTTATT-GTT---CGAAAAGATTCGTTTATCAGCAG 815
.|||||||||.|| ||| ||| ||.||.|||||.|.|||.|||.|
RBAM_030010__ 770 TGATGAAAACGGA----ATTCGTTACGCGGAAGGATTCATATATGAGCTG 815
BSNT_04883___ 816 CGCGCTGAGAACCTTTATGGATTCCTTTACGCCAGATAAAACGGCTGAAT 865
.||..|..|..|||||||.||||||||| |
RBAM_030010__ 816 TGCATTACGGGCCTTTATTGATTCCTTT---------------------T 844
BSNT_04883___ 866 CA-CAAAAAA--------GCA-GTCTGCTATAA 888
|| ||||||| ||| .||| ||.|.|
RBAM_030010__ 845 CAGCAAAAAAAGCTTCCGGCACCTCT-CTTTGA 876
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