Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04879 and RBAM_029980

See Amino acid alignment / Visit BSNT_04879 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:25
# Commandline: needle
#    -asequence dna-align/BSNT_04879___yusP.1.9828.seq
#    -bsequence dna-align/RBAM_029980___yusP.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04879___yusP-RBAM_029980___yusP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04879___yusP-RBAM_029980___yusP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04879___yusP
# 2: RBAM_029980___yusP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1638
# Identity:    1271/1638 (77.6%)
# Similarity:  1271/1638 (77.6%)
# Gaps:          54/1638 ( 3.3%)
# Score: 4950.5
# 
#
#=======================================

BSNT_04879___      1 ATGA-AAATGAGTAAAGAAGGCAAACAAT-CAAAACGAACGTTATTAATA     48
                     |||| .|.|||  ||||||.|      || |||||||.||.|||||||||
RBAM_029980__      1 ATGAGCATTGA--AAAGAAAG------ATCCAAAACGCACATTATTAATA     42

BSNT_04879___     49 ACAGGCTTAATTATTGCCATGTTTTTTTCAGCCCTTGACGGTACCATTGT     98
                     ||.||||||||.||.|||||||||||.||||||||||||||.|||||.||
RBAM_029980__     43 ACCGGCTTAATCATCGCCATGTTTTTCTCAGCCCTTGACGGCACCATCGT     92

BSNT_04879___     99 CGGAACGGCCATGCCGAAAATTGTCGGTGATCTGGGCGGTTTGAGCATGA    148
                     .|||||.||.||.||.|||||.||.|||||.||.||.||.||.|||||||
RBAM_029980__     93 AGGAACAGCGATTCCTAAAATCGTGGGTGACCTCGGGGGATTAAGCATGA    142

BSNT_04879___    149 TGACCTGGCTGACAACTGCATATTTGTTAACATCAACAACCATTGTTCCA    198
                     ||||.||||||||.||.||||||.|.|||||.||.||.||.||.|||||.
RBAM_029980__    143 TGACGTGGCTGACCACGGCATATCTTTTAACTTCGACGACGATCGTTCCG    192

BSNT_04879___    199 ATTGCCGGTAAACTGGCTGATTTATTGGGACGCCGCATTGTCTATGTATC    248
                     |||||.||.|||||.||.|||||||||||.||||||.|.|||||||||||
RBAM_029980__    193 ATTGCGGGGAAACTTGCAGATTTATTGGGGCGCCGCGTCGTCTATGTATC    242

BSNT_04879___    249 AGGTTTGATT-ATTTTCATGGCCGCTTCTGCTTTGTGCGGAATGGCCAAC    297
                     |||||| ||| |||||.||||..|||||.||..|||||||||||||||.|
RBAM_029980__    243 AGGTTT-ATTGATTTTTATGGGAGCTTCCGCACTGTGCGGAATGGCCAGC    291

BSNT_04879___    298 AACATGACGGAATTGATTATCTTCCGTGGACTGCAGGGAATCGGCGGAGG    347
                     ||||||||||||.|||||||.|||||.|||||.||||||||||||||.||
RBAM_029980__    292 AACATGACGGAACTGATTATTTTCCGCGGACTTCAGGGAATCGGCGGCGG    341

BSNT_04879___    348 CATCATGATGCCGATGGCGATGATTGTCATCGGTGACTTGTTCACAGGAA    397
                     ..||||||||||||||||.|||||.||||||||.||.|||||||||||.|
RBAM_029980__    342 TGTCATGATGCCGATGGCTATGATCGTCATCGGGGATTTGTTCACAGGGA    391

BSNT_04879___    398 AACAGCGTGCTAAATTCCAAGGTGTCTTTGGCGCAATTTACGGGCTGGCT    447
                     ||||||||||.||.||||||||..|.||.||.||.|||||||||||.|||
RBAM_029980__    392 AACAGCGTGCCAAGTTCCAAGGGCTTTTCGGGGCGATTTACGGGCTTGCT    441

BSNT_04879___    448 TCAGTGATTGGGCCGCAAATCGGCGGCTGGATTGTAGACTCGTTAAACTG    497
                     ||.|||||.||.|||||||||||.|||||||||||.|||||.|||||.||
RBAM_029980__    442 TCCGTGATCGGCCCGCAAATCGGGGGCTGGATTGTTGACTCATTAAATTG    491

BSNT_04879___    498 GAAATGGGTTTTCTATATTAATCTGCCAGTCGGAATTATTGCGGTTATTT    547
                     ||||||||||||||||||.||.|||||.|||||||||.|.||.||.||.|
RBAM_029980__    492 GAAATGGGTTTTCTATATCAACCTGCCTGTCGGAATTTTAGCCGTGATCT    541

BSNT_04879___    548 TTATTGCCAGGGGATTACAGGGACGCCAG----CAGACTGGGCCGATCAA    593
                     ||||.||.||.|||.|.||.||    |||    |||||.||||||||.||
RBAM_029980__    542 TTATCGCAAGAGGACTTCAAGG----CAGAAAACAGACCGGGCCGATTAA    587

BSNT_04879___    594 CTTCGATATCGCTGGTATTTTCACAATGATTGTGGGTGTGGTCAGCCTCC    643
                     |||.||.|||||.||.||||||||||||||.||.||..|.||||||||||
RBAM_029980__    588 CTTTGACATCGCCGGCATTTTCACAATGATCGTCGGAATCGTCAGCCTCC    637

BSNT_04879___    644 TGCTCGCCTTAAGCTTTGGCGGAAAAGATTATGCATGGGATTCATGGCAG    693
                     |.|||||..|.|||||.||.|||||.|||||.|||||||..||.||||||
RBAM_029980__    638 TCCTCGCGCTCAGCTTCGGAGGAAAGGATTACGCATGGGGCTCTTGGCAG    687

BSNT_04879___    694 ATTCTTGGGTTGTTCGCTCTCGCACTGATCGGCATTGTCAGCTTTATCAT    743
                     |||||.||..|.||.||.||.|||||...|||.||||||.|.||.||..|
RBAM_029980__    688 ATTCTCGGTCTCTTTGCGCTTGCACTTGCCGGGATTGTCGGATTCATTTT    737

BSNT_04879___    744 CG-TAGAATCAAAAGCAAAAGAGCCAATCCTGCCAATGTATTTATTTAAA    792
                     || |..|||| |||||||||||.||.||.|||||.|||||..|.||||||
RBAM_029980__    738 CGCTGAAATC-AAAGCAAAAGAACCGATTCTGCCGATGTACCTGTTTAAA    786

BSNT_04879___    793 AACAGAACATTTACATTTCTAAACTTGATCGGCTTCTTTATGAGTATCGG    842
                     ||||||||.|||||..|.||.||..||||||||||.||.|||||||||||
RBAM_029980__    787 AACAGAACGTTTACCGTACTGAATCTGATCGGCTTTTTCATGAGTATCGG    836

BSNT_04879___    843 TATGTTTGGCGCCATTACATTTGTTCCTTTCTTTATGCAGGGAATTGTCG    892
                     .|||||.||||||.||||.||.||||||||||||||||||||||||.|||
RBAM_029980__    837 CATGTTCGGCGCCGTTACGTTCGTTCCTTTCTTTATGCAGGGAATTATCG    886

BSNT_04879___    893 GTGTAAGTGCGTCTGAATCGGGTACAATTATGACACCGATGATGATTTCT    942
                     |.||.||.||..|.|..||.||.||.||||||||||||||||||.|.|||
RBAM_029980__    887 GAGTCAGCGCCACCGCGTCCGGCACGATTATGACACCGATGATGGTATCT    936

BSNT_04879___    943 ATGATTATCACAAGTATCATCGGCGGACAGCTTGTTTATAAAATCGGGAT    992
                     |||||||||||||||||.|||||.||.|||||.||||||||.|||||.||
RBAM_029980__    937 ATGATTATCACAAGTATTATCGGAGGCCAGCTGGTTTATAAGATCGGTAT    986

BSNT_04879___    993 TAAACCGCAAATCATTGCAGGCATGCTGGTTATGGCCGGCGGATTCCTGC   1042
                     |||||||||||||||....|||||||||.|.|||||||.|||.|||.|..
RBAM_029980__    987 TAAACCGCAAATCATGATCGGCATGCTGATCATGGCCGTCGGCTTCTTCT   1036

BSNT_04879___   1043 TGTTAACGACATTGGATCTCGACACGAGCAAGCTTGTCGCTACATCTTTT   1092
                     |.||||||||.||..|.||.||.||.||||||||.|..|||||||..|.|
RBAM_029980__   1037 TATTAACGACCTTACAGCTGGATACAAGCAAGCTCGCGGCTACATGCTAT   1086

BSNT_04879___   1093 ATGGCGATTATTGGTCTGGGAATGGGTCTTGTTATGCCGATTCTGACATT   1142
                     |||||..|.||.||||||||||||||.||.||.||||||.||||.||..|
RBAM_029980__   1087 ATGGCCGTGATCGGTCTGGGAATGGGGCTCGTCATGCCGCTTCTCACGCT   1136

BSNT_04879___   1143 GGCTTTACAGGAAAGCTTTTCGAAGGAGGAGCTTGGAGTTGTCACTTCAT   1192
                     .|||.|.||.||||..|||||.||.||.|||||.||.|||||.||.||.|
RBAM_029980__   1137 CGCTCTGCAAGAAACGTTTTCAAAAGAAGAGCTGGGTGTTGTGACCTCTT   1186

BSNT_04879___   1193 CCAGCCAATTCTTCCGTTCTATCGGCGGAACATTCGGCATTACCATGCTG   1242
                     |.||||||||.|||||....|||||.|||||.|||||||||||..||||.
RBAM_029980__   1187 CAAGCCAATTTTTCCGGATGATCGGGGGAACGTTCGGCATTACGGTGCTC   1236

BSNT_04879___   1243 GGAGCCGTAATGAATGCGAGATCAGGAAATCTATTAACAGATAAATTGGT   1292
                     ||.||.||.||||||||.||||||||||..||.|||||.||.|.|.||||
RBAM_029980__   1237 GGCGCTGTCATGAATGCCAGATCAGGAAGCCTTTTAACCGACAGACTGGT   1286

BSNT_04879___   1293 TCCATATTTAGACTCTCTTCCGGCACAGGCAAGCTCGTTTGCCGCCCAGC   1342
                     .||.||.||||||||.||.|||..|||||||||..|.||||||||||||.
RBAM_029980__   1287 GCCTTACTTAGACTCACTCCCGAAACAGGCAAGTGCCTTTGCCGCCCAGT   1336

BSNT_04879___   1343 TAAAGGGTATGATTGATACAAATCCGCAAGGGCTGCTGCAATCACTGTTC   1392
                     |.||.|||||||||||.|..|||||..||||||||||.|||||..|||||
RBAM_029980__   1337 TTAAAGGTATGATTGACAAGAATCCTGAAGGGCTGCTTCAATCCTTGTTC   1386

BSNT_04879___   1393 AGTCCGGACGCGGTCAAACAAATCCCTGCGGCTTTCTCATCCCATATTGT   1442
                     ||.|.|||..||.|.||.||.||.||.||.||.||.||.||||||||.||
RBAM_029980__   1387 AGCCAGGAATCGATTAAGCAGATTCCGGCCGCATTTTCTTCCCATATCGT   1436

BSNT_04879___   1443 GCCGATTTTAAAAACATCGTTGATGGATTCGCTCCACAGCGTGTTTTATA   1492
                     ||||.||||.|||||.||..|||||||||||||.|||||||||||||..|
RBAM_029980__   1437 GCCGGTTTTGAAAACGTCACTGATGGATTCGCTTCACAGCGTGTTTTTCA   1486

BSNT_04879___   1493 CGGGCCTGATCTTTATCGCAGTCG----GAGCCGTATTCACCTTGTTCTT   1538
                     |.||||||..|||||||||.|.||    ||.||    ||||..||||..|
RBAM_029980__   1487 CAGGCCTGGCCTTTATCGCTGCCGGATTGATCC----TCACGCTGTTTGT   1532

BSNT_04879___   1539 AAAACCTATCAAGCTATCAAATAAGAAAACGGAAGACCAACAAGAAAAAG   1588
                     .|||.|.||.||.||..||||.||.||.||   ||.|.||||||||.||.
RBAM_029980__   1533 TAAATCAATTAAACTGACAAACAAAAAGAC---AGGCAAACAAGAAGAAA   1579

BSNT_04879___   1589 AGAAAGCGGCAAAAGCCGTTGAATCACCTTCCCATTAA   1626
                     |      |||.|||||||||.||               
RBAM_029980__   1580 A------GGCGAAAGCCGTTTAA---------------   1596


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