Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04879 and RBAM_029980
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:25
# Commandline: needle
# -asequence dna-align/BSNT_04879___yusP.1.9828.seq
# -bsequence dna-align/RBAM_029980___yusP.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04879___yusP-RBAM_029980___yusP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04879___yusP-RBAM_029980___yusP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04879___yusP
# 2: RBAM_029980___yusP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1638
# Identity: 1271/1638 (77.6%)
# Similarity: 1271/1638 (77.6%)
# Gaps: 54/1638 ( 3.3%)
# Score: 4950.5
#
#
#=======================================
BSNT_04879___ 1 ATGA-AAATGAGTAAAGAAGGCAAACAAT-CAAAACGAACGTTATTAATA 48
|||| .|.||| ||||||.| || |||||||.||.|||||||||
RBAM_029980__ 1 ATGAGCATTGA--AAAGAAAG------ATCCAAAACGCACATTATTAATA 42
BSNT_04879___ 49 ACAGGCTTAATTATTGCCATGTTTTTTTCAGCCCTTGACGGTACCATTGT 98
||.||||||||.||.|||||||||||.||||||||||||||.|||||.||
RBAM_029980__ 43 ACCGGCTTAATCATCGCCATGTTTTTCTCAGCCCTTGACGGCACCATCGT 92
BSNT_04879___ 99 CGGAACGGCCATGCCGAAAATTGTCGGTGATCTGGGCGGTTTGAGCATGA 148
.|||||.||.||.||.|||||.||.|||||.||.||.||.||.|||||||
RBAM_029980__ 93 AGGAACAGCGATTCCTAAAATCGTGGGTGACCTCGGGGGATTAAGCATGA 142
BSNT_04879___ 149 TGACCTGGCTGACAACTGCATATTTGTTAACATCAACAACCATTGTTCCA 198
||||.||||||||.||.||||||.|.|||||.||.||.||.||.|||||.
RBAM_029980__ 143 TGACGTGGCTGACCACGGCATATCTTTTAACTTCGACGACGATCGTTCCG 192
BSNT_04879___ 199 ATTGCCGGTAAACTGGCTGATTTATTGGGACGCCGCATTGTCTATGTATC 248
|||||.||.|||||.||.|||||||||||.||||||.|.|||||||||||
RBAM_029980__ 193 ATTGCGGGGAAACTTGCAGATTTATTGGGGCGCCGCGTCGTCTATGTATC 242
BSNT_04879___ 249 AGGTTTGATT-ATTTTCATGGCCGCTTCTGCTTTGTGCGGAATGGCCAAC 297
|||||| ||| |||||.||||..|||||.||..|||||||||||||||.|
RBAM_029980__ 243 AGGTTT-ATTGATTTTTATGGGAGCTTCCGCACTGTGCGGAATGGCCAGC 291
BSNT_04879___ 298 AACATGACGGAATTGATTATCTTCCGTGGACTGCAGGGAATCGGCGGAGG 347
||||||||||||.|||||||.|||||.|||||.||||||||||||||.||
RBAM_029980__ 292 AACATGACGGAACTGATTATTTTCCGCGGACTTCAGGGAATCGGCGGCGG 341
BSNT_04879___ 348 CATCATGATGCCGATGGCGATGATTGTCATCGGTGACTTGTTCACAGGAA 397
..||||||||||||||||.|||||.||||||||.||.|||||||||||.|
RBAM_029980__ 342 TGTCATGATGCCGATGGCTATGATCGTCATCGGGGATTTGTTCACAGGGA 391
BSNT_04879___ 398 AACAGCGTGCTAAATTCCAAGGTGTCTTTGGCGCAATTTACGGGCTGGCT 447
||||||||||.||.||||||||..|.||.||.||.|||||||||||.|||
RBAM_029980__ 392 AACAGCGTGCCAAGTTCCAAGGGCTTTTCGGGGCGATTTACGGGCTTGCT 441
BSNT_04879___ 448 TCAGTGATTGGGCCGCAAATCGGCGGCTGGATTGTAGACTCGTTAAACTG 497
||.|||||.||.|||||||||||.|||||||||||.|||||.|||||.||
RBAM_029980__ 442 TCCGTGATCGGCCCGCAAATCGGGGGCTGGATTGTTGACTCATTAAATTG 491
BSNT_04879___ 498 GAAATGGGTTTTCTATATTAATCTGCCAGTCGGAATTATTGCGGTTATTT 547
||||||||||||||||||.||.|||||.|||||||||.|.||.||.||.|
RBAM_029980__ 492 GAAATGGGTTTTCTATATCAACCTGCCTGTCGGAATTTTAGCCGTGATCT 541
BSNT_04879___ 548 TTATTGCCAGGGGATTACAGGGACGCCAG----CAGACTGGGCCGATCAA 593
||||.||.||.|||.|.||.|| ||| |||||.||||||||.||
RBAM_029980__ 542 TTATCGCAAGAGGACTTCAAGG----CAGAAAACAGACCGGGCCGATTAA 587
BSNT_04879___ 594 CTTCGATATCGCTGGTATTTTCACAATGATTGTGGGTGTGGTCAGCCTCC 643
|||.||.|||||.||.||||||||||||||.||.||..|.||||||||||
RBAM_029980__ 588 CTTTGACATCGCCGGCATTTTCACAATGATCGTCGGAATCGTCAGCCTCC 637
BSNT_04879___ 644 TGCTCGCCTTAAGCTTTGGCGGAAAAGATTATGCATGGGATTCATGGCAG 693
|.|||||..|.|||||.||.|||||.|||||.|||||||..||.||||||
RBAM_029980__ 638 TCCTCGCGCTCAGCTTCGGAGGAAAGGATTACGCATGGGGCTCTTGGCAG 687
BSNT_04879___ 694 ATTCTTGGGTTGTTCGCTCTCGCACTGATCGGCATTGTCAGCTTTATCAT 743
|||||.||..|.||.||.||.|||||...|||.||||||.|.||.||..|
RBAM_029980__ 688 ATTCTCGGTCTCTTTGCGCTTGCACTTGCCGGGATTGTCGGATTCATTTT 737
BSNT_04879___ 744 CG-TAGAATCAAAAGCAAAAGAGCCAATCCTGCCAATGTATTTATTTAAA 792
|| |..|||| |||||||||||.||.||.|||||.|||||..|.||||||
RBAM_029980__ 738 CGCTGAAATC-AAAGCAAAAGAACCGATTCTGCCGATGTACCTGTTTAAA 786
BSNT_04879___ 793 AACAGAACATTTACATTTCTAAACTTGATCGGCTTCTTTATGAGTATCGG 842
||||||||.|||||..|.||.||..||||||||||.||.|||||||||||
RBAM_029980__ 787 AACAGAACGTTTACCGTACTGAATCTGATCGGCTTTTTCATGAGTATCGG 836
BSNT_04879___ 843 TATGTTTGGCGCCATTACATTTGTTCCTTTCTTTATGCAGGGAATTGTCG 892
.|||||.||||||.||||.||.||||||||||||||||||||||||.|||
RBAM_029980__ 837 CATGTTCGGCGCCGTTACGTTCGTTCCTTTCTTTATGCAGGGAATTATCG 886
BSNT_04879___ 893 GTGTAAGTGCGTCTGAATCGGGTACAATTATGACACCGATGATGATTTCT 942
|.||.||.||..|.|..||.||.||.||||||||||||||||||.|.|||
RBAM_029980__ 887 GAGTCAGCGCCACCGCGTCCGGCACGATTATGACACCGATGATGGTATCT 936
BSNT_04879___ 943 ATGATTATCACAAGTATCATCGGCGGACAGCTTGTTTATAAAATCGGGAT 992
|||||||||||||||||.|||||.||.|||||.||||||||.|||||.||
RBAM_029980__ 937 ATGATTATCACAAGTATTATCGGAGGCCAGCTGGTTTATAAGATCGGTAT 986
BSNT_04879___ 993 TAAACCGCAAATCATTGCAGGCATGCTGGTTATGGCCGGCGGATTCCTGC 1042
|||||||||||||||....|||||||||.|.|||||||.|||.|||.|..
RBAM_029980__ 987 TAAACCGCAAATCATGATCGGCATGCTGATCATGGCCGTCGGCTTCTTCT 1036
BSNT_04879___ 1043 TGTTAACGACATTGGATCTCGACACGAGCAAGCTTGTCGCTACATCTTTT 1092
|.||||||||.||..|.||.||.||.||||||||.|..|||||||..|.|
RBAM_029980__ 1037 TATTAACGACCTTACAGCTGGATACAAGCAAGCTCGCGGCTACATGCTAT 1086
BSNT_04879___ 1093 ATGGCGATTATTGGTCTGGGAATGGGTCTTGTTATGCCGATTCTGACATT 1142
|||||..|.||.||||||||||||||.||.||.||||||.||||.||..|
RBAM_029980__ 1087 ATGGCCGTGATCGGTCTGGGAATGGGGCTCGTCATGCCGCTTCTCACGCT 1136
BSNT_04879___ 1143 GGCTTTACAGGAAAGCTTTTCGAAGGAGGAGCTTGGAGTTGTCACTTCAT 1192
.|||.|.||.||||..|||||.||.||.|||||.||.|||||.||.||.|
RBAM_029980__ 1137 CGCTCTGCAAGAAACGTTTTCAAAAGAAGAGCTGGGTGTTGTGACCTCTT 1186
BSNT_04879___ 1193 CCAGCCAATTCTTCCGTTCTATCGGCGGAACATTCGGCATTACCATGCTG 1242
|.||||||||.|||||....|||||.|||||.|||||||||||..||||.
RBAM_029980__ 1187 CAAGCCAATTTTTCCGGATGATCGGGGGAACGTTCGGCATTACGGTGCTC 1236
BSNT_04879___ 1243 GGAGCCGTAATGAATGCGAGATCAGGAAATCTATTAACAGATAAATTGGT 1292
||.||.||.||||||||.||||||||||..||.|||||.||.|.|.||||
RBAM_029980__ 1237 GGCGCTGTCATGAATGCCAGATCAGGAAGCCTTTTAACCGACAGACTGGT 1286
BSNT_04879___ 1293 TCCATATTTAGACTCTCTTCCGGCACAGGCAAGCTCGTTTGCCGCCCAGC 1342
.||.||.||||||||.||.|||..|||||||||..|.||||||||||||.
RBAM_029980__ 1287 GCCTTACTTAGACTCACTCCCGAAACAGGCAAGTGCCTTTGCCGCCCAGT 1336
BSNT_04879___ 1343 TAAAGGGTATGATTGATACAAATCCGCAAGGGCTGCTGCAATCACTGTTC 1392
|.||.|||||||||||.|..|||||..||||||||||.|||||..|||||
RBAM_029980__ 1337 TTAAAGGTATGATTGACAAGAATCCTGAAGGGCTGCTTCAATCCTTGTTC 1386
BSNT_04879___ 1393 AGTCCGGACGCGGTCAAACAAATCCCTGCGGCTTTCTCATCCCATATTGT 1442
||.|.|||..||.|.||.||.||.||.||.||.||.||.||||||||.||
RBAM_029980__ 1387 AGCCAGGAATCGATTAAGCAGATTCCGGCCGCATTTTCTTCCCATATCGT 1436
BSNT_04879___ 1443 GCCGATTTTAAAAACATCGTTGATGGATTCGCTCCACAGCGTGTTTTATA 1492
||||.||||.|||||.||..|||||||||||||.|||||||||||||..|
RBAM_029980__ 1437 GCCGGTTTTGAAAACGTCACTGATGGATTCGCTTCACAGCGTGTTTTTCA 1486
BSNT_04879___ 1493 CGGGCCTGATCTTTATCGCAGTCG----GAGCCGTATTCACCTTGTTCTT 1538
|.||||||..|||||||||.|.|| ||.|| ||||..||||..|
RBAM_029980__ 1487 CAGGCCTGGCCTTTATCGCTGCCGGATTGATCC----TCACGCTGTTTGT 1532
BSNT_04879___ 1539 AAAACCTATCAAGCTATCAAATAAGAAAACGGAAGACCAACAAGAAAAAG 1588
.|||.|.||.||.||..||||.||.||.|| ||.|.||||||||.||.
RBAM_029980__ 1533 TAAATCAATTAAACTGACAAACAAAAAGAC---AGGCAAACAAGAAGAAA 1579
BSNT_04879___ 1589 AGAAAGCGGCAAAAGCCGTTGAATCACCTTCCCATTAA 1626
| |||.|||||||||.||
RBAM_029980__ 1580 A------GGCGAAAGCCGTTTAA--------------- 1596
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