Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04873 and RBAM_029950

See Amino acid alignment / Visit BSNT_04873 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:25
# Commandline: needle
#    -asequence dna-align/BSNT_04873.1.9828.seq
#    -bsequence dna-align/RBAM_029950.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04873-RBAM_029950.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04873-RBAM_029950.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04873
# 2: RBAM_029950
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 262
# Identity:     185/262 (70.6%)
# Similarity:   185/262 (70.6%)
# Gaps:          20/262 ( 7.6%)
# Score: 639.5
# 
#
#=======================================

BSNT_04873         1 ATGGATAATCAGCAGCA-ATCTCAAA--TGCCGCCTTCCGTTATTTCGAC     47
                     |||.|.||.||..|||| |.|..|||  ||||||||.||||.||.||.||
RBAM_029950        1 ATGAACAACCAAGAGCAGAACGGAAACTTGCCGCCTGCCGTCATCTCAAC     50

BSNT_04873        48 AAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCTCGCGA     97
                     .||.||.|||||||||||..|.||||||||||||||||||.||||.||.|
RBAM_029950       51 GAAAGACCATTTGTATCTTGAGGACATGCTGAACTGGAATCTGCTTGCCA    100

BSNT_04873        98 TGAAAAAAGCGCATTTCATGGCGCAGCAGTGCCAGGATCAAACGTTAAAG    147
                     ||||||||||||||||.||||||.|.||.||||||.||||.||||||||.
RBAM_029950      101 TGAAAAAAGCGCATTTTATGGCGGAACACTGCCAGAATCAGACGTTAAAA    150

BSNT_04873       148 CAAGAACTCGACCGCATCGGACACATGCATCATGATCACTATCAAAGAAT    197
                     |||||.||.||.|..|||||.|..||||||||..|.||.|||||....||
RBAM_029950      151 CAAGAGCTTGATCAAATCGGCCGGATGCATCAGAAACATTATCAGCACAT    200

BSNT_04873       198 ATTAAAGCACCTGCAGCC------AGGC-------CAGCAGCAGTCCGGC    234
                     |||....|.|.||.|.||      ||||       ||.||.||    |||
RBAM_029950      201 ATTGGGCCGCTTGAACCCCGATCAAGGCGGACAGACAACAACA----GGC    246

BSNT_04873       235 TACATCCAATAA    246
                     ||.||.|||||.
RBAM_029950      247 TATATGCAATAG    258


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