Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04867 and RBAM_029910
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:24
# Commandline: needle
# -asequence dna-align/BSNT_04867___yusK.1.9828.seq
# -bsequence dna-align/RBAM_029910___yusK.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04867___yusK-RBAM_029910___yusK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04867___yusK-RBAM_029910___yusK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04867___yusK
# 2: RBAM_029910___yusK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1190
# Identity: 936/1190 (78.7%)
# Similarity: 936/1190 (78.7%)
# Gaps: 28/1190 ( 2.4%)
# Score: 3619.5
#
#
#=======================================
BSNT_04867___ 1 ATGAAAGAGGCAGTCATTGTGTCAGGTGCAAGAACACCGGTTGGAAAAGC 50
||||.|||.||||||||||||.|.|||||.|||||.|||||.||.|||||
RBAM_029910__ 1 ATGAGAGAAGCAGTCATTGTGGCCGGTGCGAGAACCCCGGTCGGTAAAGC 50
BSNT_04867___ 51 AAAAAAAGGATCGTTGGCCACCGTTCGTCCGGATGATTTGGGAGCGATTT 100
.||||||||||||.|.||..||||||||||.||||||||.||.|||.|||
RBAM_029910__ 51 GAAAAAAGGATCGCTTGCAGCCGTTCGTCCTGATGATTTAGGCGCGCTTT 100
BSNT_04867___ 101 GTGTAAAAGAGACACTGAAACGGGCAGGCGGTTACGAAGGTAATATTGAC 150
||||||||||.||.|||||||||||||||||.||.|||||.|||||.||.
RBAM_029910__ 101 GTGTAAAAGAAACGCTGAAACGGGCAGGCGGATATGAAGGAAATATCGAT 150
BSNT_04867___ 151 GATTTGATTATTGGCTGTGCAACGCCTGAAGCGGAGCAGGGGCTTAACAT 200
||.||.|||||.||.||||||||.||||||||.||.||.||..|.||.||
RBAM_029910__ 151 GACTTAATTATCGGATGTGCAACACCTGAAGCCGAACAAGGATTAAATAT 200
BSNT_04867___ 201 GGCGAGAAATATCGGGGCGCTCGCGGGATTGCCATACACGGTTCCGGCGA 250
||||.|.||||||||.|||||.|||||..|.||..|.|||||.|||||.|
RBAM_029910__ 201 GGCGCGGAATATCGGTGCGCTGGCGGGGCTTCCTCATACGGTGCCGGCCA 250
BSNT_04867___ 251 TTACAGTCAACCGGTATTGCTCTTCAGGCCTTCAGTCTATTGCATATGCA 300
||||.||.|||||.||.||||||||.||.||.||.||.||.||.||.|..
RBAM_029910__ 251 TTACGGTGAACCGCTACTGCTCTTCCGGGCTCCAATCCATCGCTTACGGT 300
BSNT_04867___ 301 GCAGAAAAAATTATGCTGGGCGCCTACGATACAGCGATCGCCGGCGGAGC 350
||.||||||||.|||.|.|||||....||.||.|..||.||.|||||.||
RBAM_029910__ 301 GCTGAAAAAATCATGATCGGCGCGGGTGACACCGTCATTGCGGGCGGTGC 350
BSNT_04867___ 351 AGAATCCATGTCGCAAGTTCCGATGATGGGGCATGTTACCCGTCCGAACC 400
.|||||||||||||||||||||||||||||||||||.|||||.|||||..
RBAM_029910__ 351 GGAATCCATGTCGCAAGTTCCGATGATGGGGCATGTGACCCGCCCGAATA 400
BSNT_04867___ 401 TTGCTTTGGCAGAAAAGGCACCGGAATATTATATGAGCATGGGACACACA 450
|.|.||||||.||..|.||.||.||.|||||.|||||||||||.||||||
RBAM_029910__ 401 TCGTTTTGGCGGAGCATGCGCCTGAGTATTACATGAGCATGGGGCACACA 450
BSNT_04867___ 451 GCCGAGCAAGTCGCGAAAAAATACGGCGTCTCCCGTGAGGATCAAGACGC 500
||.|||||.||.||..|||..||||||||.|||.|.||.||.||.||.||
RBAM_029910__ 451 GCGGAGCAGGTAGCCGAAACGTACGGCGTATCCAGAGAAGACCAGGATGC 500
BSNT_04867___ 501 GTTTGCCGTTCGCAGCCACCAAAACGCCGCTAAAGCCCTTGCAGAAGGAA 550
.||||||||.||||||||.||.||.|||||.|||||||||..||||||.|
RBAM_029910__ 501 ATTTGCCGTCCGCAGCCATCAGAATGCCGCAAAAGCCCTTAAAGAAGGGA 550
BSNT_04867___ 551 AATTTAAAGATGAAATTGTACCCGTAGAAGTGACGGTGACAGAAATCGGA 600
||||.||.||.|||||.||.||.||.|||||..||.||||||||.||||.
RBAM_029910__ 551 AATTCAATGACGAAATCGTGCCGGTTGAAGTATCGCTGACAGAAGTCGGT 600
BSNT_04867___ 601 GAAGACCATAAGCATATGGAAAAACAGTTTGTGTTTTCTCAGGATGAAGG 650
||.||||||||||....|.|||||||.|||...||||||||.||||||||
RBAM_029910__ 601 GATGACCATAAGCCGCGGAAAAAACAATTTACCTTTTCTCAAGATGAAGG 650
BSNT_04867___ 651 TGTTCG--CCCGCA-AACGACTGCAGACATCTTATCGACATTGCGCCCGG 697
.||||| ||.||| |.|| ||.|||.||||..|||...|.||.||||
RBAM_029910__ 651 CGTTCGTCCCGGCACATCG---GCTGACGTCTTGGCGAAGCTCCGTCCGG 697
BSNT_04867___ 698 CGTTTTCCGTT--GACGGG-ACGGTGACTGCGGGCAATTCCTCGCAGACA 744
|.||||| | .||||| ||.|||||.||.||.||.||.||.||.|||
RBAM_029910__ 698 CTTTTTC---TAAAACGGGAACCGTGACGGCCGGGAACTCTTCACAAACA 744
BSNT_04867___ 745 AGTGACGGAGCGGCGGCTGTCATGCTGATGGACCGGGAAAAAGC--CGAT 792
||||||||.|||||||||||||||||||||||.||.|||||||| ||..
RBAM_029910__ 745 AGTGACGGCGCGGCGGCTGTCATGCTGATGGATCGCGAAAAAGCATCGTC 794
BSNT_04867___ 793 GCTCTTGGCCTGGCGCCGCTTGTGAAATTCCGCTCCTTTGCGGTAGGCGG 842
|||| ||..||||.||||||||.||||||||.||||||||.|||||.||
RBAM_029910__ 795 GCTC--GGGTTGGCCCCGCTTGTCAAATTCCGTTCCTTTGCCGTAGGGGG 842
BSNT_04867___ 843 CGTGCCGCCGGAAGTGATGGGAATCGGACCGGTGGAAGCGATTCCGCGCG 892
|||.|||||.||.||.|||||.|||||.|||.|.|||||.||.|||||.|
RBAM_029910__ 843 CGTTCCGCCTGAGGTAATGGGGATCGGTCCGATTGAAGCCATCCCGCGGG 892
BSNT_04867___ 893 CTTTGAAGCTTGCCGGACTTCAGCTGCAGGACATC-GGCTTGTTTGAACT 941
|..|.||||||||||||||..|..|||||||.||| ||||| ||||||.|
RBAM_029910__ 893 CGCTCAAGCTTGCCGGACTCGAATTGCAGGATATCGGGCTT-TTTGAATT 941
BSNT_04867___ 942 GAATGAAGCTTTTGCCTCACAGGCCATTCAAGTAATCAGGGAA----TTG 987
||||||.||.|||||.|||||||||||||||||.||||| | |||
RBAM_029910__ 942 GAATGAGGCCTTTGCTTCACAGGCCATTCAAGTCATCAG---ATCGCTTG 988
BSNT_04867___ 988 GGAATTGATGAAGAAAAAGTGAATGTCAACGGGGGCGCAATCGCGCTTGG 1037
|| ||.|||||||||||.|||||.||||||||.|||||.||||||||.||
RBAM_029910__ 989 GG-ATAGATGAAGAAAAGGTGAACGTCAACGGAGGCGCCATCGCGCTCGG 1037
BSNT_04867___ 1038 ACACCCGCTTGGCTGTACGGGCACGAAGCTTACACTCTCACTCATCCATG 1087
|||.|||||.||.||.||.||.||||||||.||.||.||||||||.||||
RBAM_029910__ 1038 ACATCCGCTCGGATGCACCGGAACGAAGCTGACCCTGTCACTCATTCATG 1087
BSNT_04867___ 1088 AAATGAAACGGAGAAATGAGCAATTTGGAGTCGTGACCATGTGTATCGGC 1137
||||||||||||||||.||||||||.||.||.|||||.|||||.|||||.
RBAM_029910__ 1088 AAATGAAACGGAGAAACGAGCAATTCGGCGTGGTGACGATGTGCATCGGA 1137
BSNT_04867___ 1138 GGCGGGATGGGAGCGGCCGGTGTATTTGAA-TTATGCTAA 1176
|||||.|||||.||.|||||.||||||||| |.|| .|||
RBAM_029910__ 1138 GGCGGCATGGGCGCTGCCGGCGTATTTGAACTCAT-TTAA 1176
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