Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04865 and RBAM_029900
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:24
# Commandline: needle
# -asequence dna-align/BSNT_04865___yusJ.1.9828.seq
# -bsequence dna-align/RBAM_029900___yusJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04865___yusJ-RBAM_029900___yusJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04865___yusJ-RBAM_029900___yusJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04865___yusJ
# 2: RBAM_029900___yusJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1810
# Identity: 1382/1810 (76.4%)
# Similarity: 1382/1810 (76.4%)
# Gaps: 50/1810 ( 2.8%)
# Score: 5135.5
#
#
#=======================================
BSNT_04865___ 1 ATGGCAAAAA--AAACGGCTGGA-GTACAAAAAGGCGGCGGATTTTTAAT 47
||| |||.| |||||| |..| ||..|||||||||||.|.|||.|.||
RBAM_029900__ 1 ATG--AAACAGGAAACGG-TCAACGTCAAAAAAGGCGGCAGCTTTCTGAT 47
BSNT_04865___ 48 CGAGGATGTCAC---ATACGATCAAATGTATACACCGGAGGATTTCACTG 94
.||.|| .|| |||.||||||||.|..||.||||||||.||.||.|
RBAM_029900__ 48 TGAAGA---GACGGGATATGATCAAATATTCACTCCGGAGGACTTTACAG 94
BSNT_04865___ 95 ACGAGCATAAAATGATTGCGAAAACAACGGAGGATTACATCGAGCAAGAT 144
||||.||.||||||||.|..|||||.||.||.||.||..|||...|.|||
RBAM_029900__ 95 ACGAACACAAAATGATCGGCAAAACGACAGAAGACTATGTCGTAAACGAT 144
BSNT_04865___ 145 GTTCTCCCTCATATAGATGATATCGAAAACCACCAATTCGAGCATTCTGT 194
||.||.|||.||||.|||||.||.||||||||.||.|||||||||||.||
RBAM_029900__ 145 GTGCTTCCTTATATCGATGAAATTGAAAACCATCAGTTCGAGCATTCGGT 194
BSNT_04865___ 195 CAGATTGTTGAAGAAAGCGGGCGAACTAGGGCTGCTTGGCGCCGATGTGC 244
||||.||.||||.|||||.||.||.||.||.||.||.||.||.||.||||
RBAM_029900__ 195 CAGACTGCTGAAAAAAGCCGGAGATCTCGGCCTCCTCGGAGCAGACGTGC 244
BSNT_04865___ 245 CAGAAGAATACGGCGGGCTCGGCCTAGATAAAATCAGCTCGGCACTCATC 294
|.|||||.||||||||..|||||||.|||||||||||.||.||..||||.
RBAM_029900__ 245 CTGAAGAGTACGGCGGAATCGGCCTGGATAAAATCAGTTCAGCCTTCATT 294
BSNT_04865___ 295 ACTGAGAAATTTTCGCGTGCGGGAAGCTTTTCTCTTTCTTATGGCGCGCA 344
||.||.||.|||||.|||||.||.||||||||.||.|||||.|||||.||
RBAM_029900__ 295 ACGGAAAAGTTTTCACGTGCCGGCAGCTTTTCGCTGTCTTACGGCGCCCA 344
BSNT_04865___ 345 TGTCGGTATCGGTTCCTTGCCGATCGTCTTTTTCGGATCAGAAGAACAAA 394
.|||||.|||||.||.|||||||||||.||.||||||.|.||||||||.|
RBAM_029900__ 345 CGTCGGGATCGGCTCATTGCCGATCGTGTTCTTCGGAACGGAAGAACAGA 394
BSNT_04865___ 395 AGAAAAAATATTTACCTGGAC-TCGCTTCAGGCGAAAAGATCGCCGCTTA 443
|.||||..|||||.|| |||| |.||||||||..|||..|||||.||.||
RBAM_029900__ 395 AAAAAACCTATTTGCC-GGACTTGGCTTCAGGACAAAGAATCGCGGCATA 443
BSNT_04865___ 444 TGCTCTGACTGAGCCTGGCTCTGGGTCTGATGCACTTGGAGCAAAAACAA 493
.||..|.||||||||.||.||.||.||.|||||.||.|||||.|||||.|
RBAM_029900__ 444 CGCCTTAACTGAGCCCGGTTCAGGTTCAGATGCCCTCGGAGCGAAAACCA 493
BSNT_04865___ 494 CAGCTGTGCTGAATGAAGCAGGAACCCATTAT-GTATTAACAGGGGAAAA 542
|.|||||..||||||||||.||.||.||.||| .|.||||| ||.|||||
RBAM_029900__ 494 CGGCTGTTTTGAATGAAGCGGGCACACACTATATTCTTAAC-GGAGAAAA 542
BSNT_04865___ 543 ACAGTGGATTACCAACTCTGCTTTTGCCGATGTATTTGTGGTTTACGCCA 592
.||.||||||||.|||||.||.|||||.|||||.|||||.||.|||||.|
RBAM_029900__ 543 GCAATGGATTACAAACTCCGCCTTTGCAGATGTCTTTGTCGTCTACGCTA 592
BSNT_04865___ 593 AGGTAGACGGCGACAAGTTTTCAGCCTTTATTGTAGAAAAAGAGTTCCCG 642
|.||.|||||.||.||.|||||.||.|||||.||||||||..|.|..|||
RBAM_029900__ 593 AAGTGGACGGAGATAAATTTTCCGCATTTATCGTAGAAAAGAACTATCCG 642
BSNT_04865___ 643 GGTGTCTCCACCGGACCGGAAGAAAAGAAAATGGGAATCAAGGGATCATC 692
||.||.||.||.||.||||||||.||.||||||||.||.|||||.|||||
RBAM_029900__ 643 GGCGTGTCAACGGGCCCGGAAGAGAAAAAAATGGGGATTAAGGGTTCATC 692
BSNT_04865___ 693 GACAAGAACCCTCATTCTGGATCAAGCTGAAGTGCCAACGGAAAACCTGC 742
|||||||||.||.|||.|.|||||.||.|||||.||.|..||||||||.|
RBAM_029900__ 693 GACAAGAACGCTGATTTTAGATCAGGCGGAAGTCCCGAAAGAAAACCTTC 742
BSNT_04865___ 743 TCGGAGAAATCGGCAAAGGGCATGTCATTGCCTTTAATATTTTAAACATC 792
||||.||||||||.|||||.||||||||.||||||||||||.|.||.|||
RBAM_029900__ 743 TCGGCGAAATCGGAAAAGGACATGTCATCGCCTTTAATATTCTTAATATC 792
BSNT_04865___ 793 GGCCGTTACAAACTGGCGGTTGGCACAATCGGCGCATCTAAACGCGTCAT 842
||.||.|||||.||.||.||.||||||||||||||.||.|||||.||.||
RBAM_029900__ 793 GGGCGCTACAAGCTTGCCGTCGGCACAATCGGCGCTTCAAAACGGGTGAT 842
BSNT_04865___ 843 CGAGCTGTCTGCGTCATACGCAAATCAGCGCCGCCAATTTAAAACGCCGA 892
.|||||||||||..|.||.|||||.||||||||.||||||||||||||||
RBAM_029900__ 843 TGAGCTGTCTGCCGCTTATGCAAACCAGCGCCGGCAATTTAAAACGCCGA 892
BSNT_04865___ 893 TTGCTGGTTTTTCATTGACACAGGAAAAAATCGGGACAATGGC--CTCAA 940
|..|..|.||..|..|.||.||||||||..|.|.|||.|||.| |||
RBAM_029900__ 893 TCTCAAGCTTCACGCTCACTCAGGAAAAGCTTGCGACGATGTCAGCTC-- 940
BSNT_04865___ 941 GGCTGTATGCGATGGAAAGCTCTGTATACAGAACCGTCGGGC-TGTTTGA 989
||||.||.||||||||.|||||||||||||||||.|| |||| |.||.||
RBAM_029900__ 941 GGCTTTACGCGATGGAGAGCTCTGTATACAGAACAGT-GGGCTTATTCGA 989
BSNT_04865___ 990 AGACAATATGAGCCAG-TTCACGGCGGAAGATCTCAAGGACGGCCGGCAA 1038
|||.|||||||| ||| .|.||||..||.||.|..||.|||||.||..||
RBAM_029900__ 990 AGATAATATGAG-CAGACTGACGGAAGAGGAGCAAAAAGACGGACGCGAA 1038
BSNT_04865___ 1039 ATTGCCAAATCGATTGCGGAATACGCTATCGAATGCTCTCTGAATAAAGT 1088
.|.||.||.||.||.||.||.|||||.||.||||||||.||.||.|||.|
RBAM_029900__ 1039 GTCGCGAAGTCAATCGCCGAGTACGCGATTGAATGCTCGCTCAACAAAAT 1088
BSNT_04865___ 1089 ATTCGGCTCTGAAACGCTTGATTATATCGTTGATGAAGGCGTGCAGATTC 1138
.|.|||.||||||||||||||||||||.|..||.||||||||.||.||||
RBAM_029900__ 1089 GTGCGGTTCTGAAACGCTTGATTATATTGCCGACGAAGGCGTTCAAATTC 1138
BSNT_04865___ 1139 ATGGAGGCTACGGCTTTATGCAGGAGTACGAAGTAGAAAGGGCCTATAGG 1188
|.||.||.|||||.|||||||||||.||.|||||.|||.|.||||||.|.
RBAM_029900__ 1139 ACGGCGGTTACGGATTTATGCAGGAATATGAAGTGGAACGCGCCTATCGC 1188
BSNT_04865___ 1189 GATTCAAGGATCAATCGGATTTTTGAAGGCACAAACGAAATCAACCGGTT 1238
||.|||||.|||||..|.|||||||||||||||||.|||||||||||..|
RBAM_029900__ 1189 GACTCAAGAATCAACAGAATTTTTGAAGGCACAAATGAAATCAACCGCCT 1238
BSNT_04865___ 1239 AATCGTGCCAAGCACCTTCCTGAAAAAAGCGCTTAAAGGCGAGCTG---- 1284
.|||||..|.|||||.||||||||||||||..|.|||||..|||||
RBAM_029900__ 1239 GATCGTAACGAGCACGTTCCTGAAAAAAGCCGTAAAAGGTCAGCTGCCGC 1288
BSNT_04865___ 1285 TCTTTATTCGAAAAAGCGCAGTCGCTGCAGGAAGAACTCATGATGCTTAT 1334
||||| ||||||||..|..||||.||.|||||||||||||||||.||
RBAM_029900__ 1289 TCTTT----GAAAAAGCAAAAGCGCTCCAAGAAGAACTCATGATGCTGAT 1334
BSNT_04865___ 1335 GCCTGAAGAGCCTG-----GAAGCGGCGTCTTAGAGCAGGAGAAATATAT 1379
||||||||||||.| ||| |.|||| ||.|||||.|||||.||
RBAM_029900__ 1335 GCCTGAAGAGCCGGGCTCAGAA----CCTCTT-GAACAGGAAAAATACAT 1379
BSNT_04865___ 1380 CGTCAAGCAAGCCAAAAAAATTGCGTTGTTTGCTGCCGGCCTAGCCGCGC 1429
.||||..||.||.|||||.||.||..|.||..|.||.||.||.||.||||
RBAM_029900__ 1380 TGTCAGACAGGCGAAAAAGATCGCCCTCTTGACAGCGGGTCTCGCGGCGC 1429
BSNT_04865___ 1430 AAAAATACGGAAAAGCGATCGATCGTGAGCAAGAAATTCTCGTGAACGTA 1479
|.||||||||.||||.||||||..|.|||||.|||||..|.||||||.|.
RBAM_029900__ 1430 AGAAATACGGCAAAGAGATCGAAGGCGAGCAGGAAATCATGGTGAACATT 1479
BSNT_04865___ 1480 GCGGATATCGTCAGCAATGTATACGCAATGGAATCAGCCGTGCTCAGAAC 1529
||.|||||.||||||....|.|||||..|||||||||||||.||||||||
RBAM_029900__ 1480 GCCGATATTGTCAGCGCGCTGTACGCTTTGGAATCAGCCGTCCTCAGAAC 1529
BSNT_04865___ 1530 GGAAAAGGCCATTGCCGCACAAGGCGCTGAAAAAGCAGCGCAAAAGGTGC 1579
||||||.||.|||||.||..|.||.||.||||||||.|||||.|||.||.
RBAM_029900__ 1530 GGAAAAAGCAATTGCGGCGGACGGTGCCGAAAAAGCCGCGCAGAAGCTGT 1579
BSNT_04865___ 1580 TGTACACAGAAATTTTCGTTCAAGAGGCCTTTAACGAA-ATTGAAGCGCA 1628
|.||.||.|||||.||.|..||.||.|||.||.| ||| |||||||||||
RBAM_029900__ 1580 TATATACGGAAATCTTTGCCCAGGAAGCCCTTCA-GAACATTGAAGCGCA 1628
BSNT_04865___ 1629 TGCGAAGGAATCCCTTATCGCAATGGAAGAAGGAGATTCACTCCGCATGA 1678
.||.||.|||||.||.|||||.|||||.|||||||||||.||||||||||
RBAM_029900__ 1629 CGCCAAAGAATCACTGATCGCCATGGAGGAAGGAGATTCCCTCCGCATGA 1678
BSNT_04865___ 1679 TGCTTTCCGCTCTGCGCAAGCTGACACGCGTAACGCCTAAAAATGTGATT 1728
|||||||||..||||||||.|||||.|||.|.|||||.|||||..|.|||
RBAM_029900__ 1679 TGCTTTCCGTGCTGCGCAAACTGACGCGCCTGACGCCGAAAAACCTCATT 1728
BSNT_04865___ 1729 CAGAAAAAACGCGAGGCGGCGGCAGGCATTTT---TGAGGCTGAGAAATA 1775
|||||||||||.||.|||||.||.|.|.|.|| ||| .||.|||||
RBAM_029900__ 1729 CAGAAAAAACGTGAAGCGGCAGCCGCCGTCTTCCGTGA---AGAAAAATA 1775
BSNT_04865___ 1776 TACTGTCTGA 1785
|||.||||||
RBAM_029900__ 1776 TACGGTCTGA 1785
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