Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04860 and RBAM_029860
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:23
# Commandline: needle
# -asequence dna-align/BSNT_04860___yusF.1.9828.seq
# -bsequence dna-align/RBAM_029860___yusF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04860___yusF-RBAM_029860___yusF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04860___yusF-RBAM_029860___yusF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04860___yusF
# 2: RBAM_029860___yusF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 468
# Identity: 312/468 (66.7%)
# Similarity: 312/468 (66.7%)
# Gaps: 63/468 (13.5%)
# Score: 959.5
#
#
#=======================================
BSNT_04860___ 1 ATGTTGGCGGTGAATTTCACTGCCTTCTTTTACAATCTGAACGTTTCA-- 48
||||||||||||||||||||||||||||.|||||| .|||.|..|
RBAM_029860__ 1 ---TTGGCGGTGAATTTCACTGCCTTCTTTTTCAATCT-CACGCTAAAAC 46
BSNT_04860___ 49 AATTTGCCGCGGCAGGTGAACAAG---ATGAAGATCGATGAGCTGGAAAA 95
||| ||||||||| ||..| |||.|.|.|| |||.| |||||
RBAM_029860__ 47 AAT------CGGCAGGTG-ACGCGCTTATGTACAACG--GAGAT-GAAAA 86
BSNT_04860___ 96 GGTAATGATTGTCGAGGGGAAATCAGATAAAGAGAAAATC---GAAAGCG 142
|||.||.||.||.||.||.|||||.||||||...|||.|| ||| |
RBAM_029860__ 87 GGTCATTATCGTAGAAGGAAAATCTGATAAAATCAAAGTCAGGGAA---G 133
BSNT_04860___ 143 TCCTGAATGAACCGGTGCGC----ATTATCTGCACAAACGGAACAATCAG 188
|.||.|..||||| ||| ||..||||.|||||||||||.|||.|
RBAM_029860__ 134 TGCTCATCGAACC----CGCGGAAATCGTCTGTACAAACGGAACGATCGG 179
BSNT_04860___ 189 CC-AGCTGAGGCTCGAGGAATTGGCTGACGAGCTTTATGATAAAGACGTC 237
|| |.|.|| .||.||.||.|||||.|||...||.|.|||.|.|||||||
RBAM_029860__ 180 CCAAACCGA-ACTGGAAGATTTGGCGGACCGCCTGTTTGACAGAGACGTC 228
BSNT_04860___ 238 TATATATTAGTTGATGCTGATGAATCAGGTGAGAAATTGAGAAAACAGCT 287
|||||.|||...||.||.|||||.||.||.||.|||||.|||||||||||
RBAM_029860__ 229 TATATTTTAACGGACGCAGATGACTCCGGAGAAAAATTAAGAAAACAGCT 278
BSNT_04860___ 288 GAAGCGTGAATTTAATGAAGCCTGCCATCTCCATATCGACAGAGCCTATA 337
|||.||.||..||...|||||..|||||.|..||||.||||||.|.||.|
RBAM_029860__ 279 GAAACGGGAGCTTCCCGAAGCGCGCCATATTTATATAGACAGAACATACA 328
BSNT_04860___ 338 AGGAAGTAGCGGCTGCGCCCAGG-CACCATGTCGCCTCTGTATTGCTGCG 386
.|.||||.|.|.| |.||||.|| ||.|||.||||.|||| |||||
RBAM_029860__ 329 GGCAAGTCGAGTC-GTGCCCGGGCCATCATCTCGCATCTG---TGCTG-- 372
BSNT_04860___ 387 TGCGAATCTGA----------ATGTCCATACTATTTTTCTTG--AAAGAA 424
|||.|| |||...|.|||.|.||| ||| ||||||
RBAM_029860__ 373 -----ATCAGAGCCGGCTTTGATGCTGACACTGTATTT-TTGAAAAAGAA 416
BSNT_04860___ 425 AGTCCCGAGGT-GTATAG 441
.|.||.||||| |||.
RBAM_029860__ 417 CGACCTGAGGTGGTAA-- 432
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