Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_04855 and RBAM_029830

See Amino acid alignment / Visit BSNT_04855 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:23
# Commandline: needle
#    -asequence dna-align/BSNT_04855___yusC.1.9828.seq
#    -bsequence dna-align/RBAM_029830___yusC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04855___yusC-RBAM_029830___yusC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04855___yusC-RBAM_029830___yusC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04855___yusC
# 2: RBAM_029830___yusC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1027
# Identity:     837/1027 (81.5%)
# Similarity:   837/1027 (81.5%)
# Gaps:           2/1027 ( 0.2%)
# Score: 3413.0
# 
#
#=======================================

BSNT_04855___      1 TTGATCAATCTTCAGGATGTTTCAAAAGTTTACAAATCGAAACATGGAGA     50
                     ||||||.|||||||..|||||||||||.||||||||.||||.|||||.||
RBAM_029830__      1 TTGATCCATCTTCAAAATGTTTCAAAAATTTACAAAGCGAAGCATGGGGA     50

BSNT_04855___     51 TGTCAATGCTGTCCAAAATGTCTCGCTTTCCATTAAAAAAGGTGAGATTT    100
                     ||||||||||||||||.|||||.|.|||...||.|||||.||.||.||.|
RBAM_029830__     51 TGTCAATGCTGTCCAAGATGTCACTCTTGATATCAAAAAGGGCGAAATAT    100

BSNT_04855___    101 TTGGAATTATAGGATATAGCGGAGCTGGTAAGAGTTCCTTAATCCGTCTG    150
                     |||||||||||||||||||||||||||||||.|||||||||||||||||.
RBAM_029830__    101 TTGGAATTATAGGATATAGCGGAGCTGGTAAAAGTTCCTTAATCCGTCTC    150

BSNT_04855___    151 CTGAACGGCCTTGAGAAACCAACCTCAGGAACCGTGGAAGTGGCGGGAAC    200
                     ||||||||||||||.||.||.||.||.||||||||||||||.|||||.||
RBAM_029830__    151 CTGAACGGCCTTGAAAAGCCGACGTCGGGAACCGTGGAAGTCGCGGGGAC    200

BSNT_04855___    201 CAAGATT-AATGAAGTAAATGGACGCGGTTTAAGAAAAGCACGCCATGAG    249
                     ..| ||| |||.||||||...|.||.||..|.||||||||.|||||.||.
RBAM_029830__    201 GGA-ATTAAATAAAGTAAGCAGCCGGGGGCTGAGAAAAGCGCGCCAGGAA    249

BSNT_04855___    250 ATCAGTATGATTTTCCAGCATTTCAATTTGCTTTGGTCGCGGACTGTCAG    299
                     |||||.|||||.|||||||||||.||..|.||.||||||||.||.||..|
RBAM_029830__    250 ATCAGCATGATCTTCCAGCATTTTAACCTTCTGTGGTCGCGCACCGTTCG    299

BSNT_04855___    300 AGATAATATCATGTTTCCTTTGGAAATTGCCGGGGTGAAAAAGAGCGAGC    349
                     .||.||.||.|||||.||..|||||||.||.||.||||||||.|||||.|
RBAM_029830__    300 GGAGAACATTATGTTCCCGCTGGAAATCGCAGGCGTGAAAAAAAGCGAAC    349

BSNT_04855___    350 GGATCAAGCGCGCCAATGAACTGATTAAACTGGTAGGTTTAGAAGGAAAA    399
                     ||.||...||.||..|||||.|||||||||||||.||.|||||.||.|||
RBAM_029830__    350 GGGTCCGCCGAGCTGATGAATTGATTAAACTGGTCGGATTAGAGGGGAAA    399

BSNT_04855___    400 GAAAAATCTTATCCATCTCAACTGAGCGGCGGTCAGAAGCAGCGTGTCGG    449
                     ||||||||||||||.||.||.||||||||||||||.||||||||||||||
RBAM_029830__    400 GAAAAATCTTATCCGTCGCAGCTGAGCGGCGGTCAAAAGCAGCGTGTCGG    449

BSNT_04855___    450 AATTGCCAGAGCGCTTGCAAACAATCCGAAGGTTCTCCTTTGTGACGAAG    499
                     .||.|||.|.|||||.||.||.||||||||.||.||.||.||.||.||||
RBAM_029830__    450 CATCGCCCGGGCGCTCGCCAATAATCCGAAAGTCCTTCTGTGCGATGAAG    499

BSNT_04855___    500 CGACATCAGCATTAGATCCGCAAACGACAGATTCAATTCTGGATCTATTG    549
                     ||||||||||..|.||||||||.|||||.|||||||||.|||||||.||.
RBAM_029830__    500 CGACATCAGCGCTTGATCCGCAGACGACTGATTCAATTTTGGATCTTTTA    549

BSNT_04855___    550 TCCGATATTAATGAAAGACTCGGTTTGACGATTGTGCTGATTACGCACGA    599
                     ||||||||.|||||.|||||||||.|||||||.|||||.|||||.||.||
RBAM_029830__    550 TCCGATATAAATGACAGACTCGGTCTGACGATCGTGCTCATTACCCATGA    599

BSNT_04855___    600 AATGCATGTCATCCGCAAAATCTGCAACAGAGTCGCCGTCATGGAAAACG    649
                     ||||||.||||||||.||||||||||||||||||||||||||||||||||
RBAM_029830__    600 AATGCACGTCATCCGTAAAATCTGCAACAGAGTCGCCGTCATGGAAAACG    649

BSNT_04855___    650 GCAAGGTGGTCGAAGAAGGCGAGGTTCTCGATGTCTTCAAAAATCCAAAG    699
                     |.||.||.||.|||||||||||.||.|||.|.||.||||.|||.||....
RBAM_029830__    650 GGAAAGTCGTTGAAGAAGGCGAAGTACTCCAAGTTTTCAGAAACCCGCGC    699

BSNT_04855___    700 GAACAAATGACAAAACGATTTGTTCAGCAGGTGACAGAGCCGGAAGAAAC    749
                     ||||..|||||.||.||.||.|||||||||||||||||.|||||.||.||
RBAM_029830__    700 GAACCGATGACCAAGCGTTTCGTTCAGCAGGTGACAGAACCGGAGGAGAC    749

BSNT_04855___    750 GAAAGAGACGCTTCAGCACCTTCTTGATGATACAGCATCAGGAAAAATGG    799
                     ||||||.||..|.|||||..||||..|.||.|||||..|||||||||.|.
RBAM_029830__    750 GAAAGAAACCATCCAGCATTTTCTGCAGGAAACAGCGACAGGAAAAACGA    799

BSNT_04855___    800 TTCAGCTCACATTTGTCGGTGAGTCAGCTGAACAGCCTCTGATTACAGAG    849
                     |||||||..||||||||||..||.|.|||||.|||||.||.|||||.||.
RBAM_029830__    800 TTCAGCTTTCATTTGTCGGGCAGGCCGCTGAGCAGCCCCTCATTACGGAA    849

BSNT_04855___    850 ATGATCAGAAACTTGAATGTCAGCGTCAATATTCTGCAAGGGAAAATTTC    899
                     ||||||.|||||||..||||...|||||||||||||||.|||||||||||
RBAM_029830__    850 ATGATCCGAAACTTTGATGTGGACGTCAATATTCTGCAGGGGAAAATTTC    899

BSNT_04855___    900 GCAGACGAAGGATGGGGCTTACGGTTCACTGTTCATCCACATTGACGGGG    949
                     .|||||||||||.||.||.||||||||..|.|||||.||.||||||||..
RBAM_029830__    900 ACAGACGAAGGACGGAGCCTACGGTTCTTTATTCATTCATATTGACGGTC    949

BSNT_04855___    950 ACGAGGAAGAAGTGCAAAACGTGATCCGTTTCATTAATGACAAACAGGTG    999
                     |.||..|||||||..|||||||||||||.|||||.||.|||||||||||.
RBAM_029830__    950 AGGAAAAAGAAGTAGAAAACGTGATCCGGTTCATCAAAGACAAACAGGTA    999

BSNT_04855___   1000 AAAGCAGAGGTGATCACGAATGTTTGA   1026
                     .||||||||||||||||.|||||||||
RBAM_029830__   1000 GAAGCAGAGGTGATCACAAATGTTTGA   1026


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04855 and RBAM_029830

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
