Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04843 and RBAM_029770
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:22
# Commandline: needle
# -asequence dna-align/BSNT_04843___csd.1.9828.seq
# -bsequence dna-align/RBAM_029770___csd.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04843___csd-RBAM_029770___csd.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04843___csd-RBAM_029770___csd.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04843___csd
# 2: RBAM_029770___csd
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1221
# Identity: 1056/1221 (86.5%)
# Similarity: 1056/1221 (86.5%)
# Gaps: 0/1221 ( 0.0%)
# Score: 4620.0
#
#
#=======================================
BSNT_04843___ 1 ATGAATATCACAGATATTCGTGAGCAGTTCCCGATCCTTCATCAGCAAGT 50
|||||||||||.|||||||||||.||||||||||||||||||||||||||
RBAM_029770__ 1 ATGAATATCACCGATATTCGTGAACAGTTCCCGATCCTTCATCAGCAAGT 50
BSNT_04843___ 51 GAACGGACATGATCTCGTTTATCTCGACAGCGCGGCGACTTCCCAGAAGC 100
||||||||||||.|||||.||.||.|||||||||||||||||||||||||
RBAM_029770__ 51 GAACGGACATGACCTCGTGTACCTTGACAGCGCGGCGACTTCCCAGAAGC 100
BSNT_04843___ 101 CGCGTGCTGTCATTGAAACACTGGATAAGTATTATAACCAATACAATTCC 150
|||||||||||||||||.||.|||||.|||||||.|.|.|||||||||||
RBAM_029770__ 101 CGCGTGCTGTCATTGAAGCAGTGGATCAGTATTACAGCAAATACAATTCC 150
BSNT_04843___ 151 AATGTTCACCGGGGCGTCCATACACTTGGAACCAGAGCGACAGATGGTTA 200
|||||.|||.|.|||||.|||||.|||||.||.|||||||||||.||.||
RBAM_029770__ 151 AATGTCCACAGAGGCGTTCATACTCTTGGCACGAGAGCGACAGACGGCTA 200
BSNT_04843___ 201 TGAAGGAGCGCGTGAAAAAGTCCGCAAGTTTATTAACGCGAAGTCAATGG 250
||||||.|||||||||||||||||.||||||||.||.|||||.|||||||
RBAM_029770__ 201 TGAAGGTGCGCGTGAAAAAGTCCGTAAGTTTATCAATGCGAAATCAATGG 250
BSNT_04843___ 251 CTGAGATTATTTTCACAAAAGGCACGACCACATCACTGAATATGGTGGCG 300
|||||.|.||||||||||||||||||||.||.||||||||||||||||||
RBAM_029770__ 251 CTGAGGTCATTTTCACAAAAGGCACGACAACTTCACTGAATATGGTGGCG 300
BSNT_04843___ 301 TTAAGCTATGCGCGCGCCAACCTGAAACCTGGTGATGAAGTGGTCATCAC 350
.|.||||||||.|||||||.|.|.|||||.||||||||||||||||||||
RBAM_029770__ 301 CTGAGCTATGCCCGCGCCAGCTTAAAACCCGGTGATGAAGTGGTCATCAC 350
BSNT_04843___ 351 CTACATGGAGCATCATGCGAATATCATTCCGTGGCAGCAGGCTGTAAAAG 400
|.|.||||||||||||||||||||.|||||||||||||||||.|||||||
RBAM_029770__ 351 CCAAATGGAGCATCATGCGAATATTATTCCGTGGCAGCAGGCAGTAAAAG 400
BSNT_04843___ 401 CAACTGGCGCCACATTAAAATATATTCCGCTGCAGGAAGACGGAACGATT 450
||||.|||||.||.|||||||||||.|||.|||||||||||||.|||.||
RBAM_029770__ 401 CAACCGGCGCGACTTTAAAATATATCCCGATGCAGGAAGACGGCACGCTT 450
BSNT_04843___ 451 TCTTTAGAAGACGTCAGAGAAACGGTCACAAGCAACACAAAAATTGTTGC 500
||.|||||.||||||.|..|.||.|||||||||.|.||.||.||.||.||
RBAM_029770__ 451 TCGTTAGACGACGTCCGGCAGACTGTCACAAGCCATACGAAGATCGTGGC 500
BSNT_04843___ 501 GGTGTCTCATGTATCTAATGTTCTCGGCACGGTCAACCCGATTAAAGAAA 550
.||..|||||||.||.||.||.||.||||||.||||||||||||||||.|
RBAM_029770__ 501 AGTCGCTCATGTGTCAAACGTGCTGGGCACGATCAACCCGATTAAAGAGA 550
BSNT_04843___ 551 TGGCGAAAATCGCTCATGACAATGGGGCTGTCATTGTGGTGGACGGTGCA 600
|.||.||||||||||||||||||||.||.|||||.|||||.|||||.||.
RBAM_029770__ 551 TCGCCAAAATCGCTCATGACAATGGCGCGGTCATCGTGGTAGACGGGGCG 600
BSNT_04843___ 601 CAAAGCACGCCTCACATGAAAATTGACGTGCAGGATCTCGATTGCGACTT 650
||||||||.||.|||||||||||.|||||.|||||..|.|||||||||||
RBAM_029770__ 601 CAAAGCACACCGCACATGAAAATCGACGTTCAGGACTTGGATTGCGACTT 650
BSNT_04843___ 651 CTTTGCGCTTTCTTCCCATAAAATGTGCGGACCTACTGGCGTTGGTGTGC 700
|||.||||||||||||||||||||||||||.||.||.||..|.||.||||
RBAM_029770__ 651 CTTCGCGCTTTCTTCCCATAAAATGTGCGGCCCGACGGGAATCGGCGTGC 700
BSNT_04843___ 701 TGTACGGAAAGAAAGCCCTGCTGGAAAATATGGAGCCTGCCGAATTCGGC 750
|||||||.|||||||..|||||.||.|||||||||||.||||||||.|||
RBAM_029770__ 701 TGTACGGCAAGAAAGAACTGCTTGAGAATATGGAGCCGGCCGAATTTGGC 750
BSNT_04843___ 751 GGTGAAATGATCGACTTTGTCGGGCTTTATGAATCAACTTGGAAAGAGCT 800
||.||.||||||||||||||.|||||||||||||||||||||||||||||
RBAM_029770__ 751 GGCGAGATGATCGACTTTGTAGGGCTTTATGAATCAACTTGGAAAGAGCT 800
BSNT_04843___ 801 TCCGTGGAAATTCGAAGCGGGTACGCCGATTATTGCAGGAGCAATCGGTC 850
||||||||||||.|||||.||.|||||||||||.|||||.||.|||||..
RBAM_029770__ 801 TCCGTGGAAATTTGAAGCAGGCACGCCGATTATCGCAGGCGCGATCGGAT 850
BSNT_04843___ 851 TCGGTGCCGCCATTGATTTTCTCGAAGCAATCGGTCTTGATGAGATTTCC 900
|.||.|||||.|||||||||||.||||..|||||.||.||.|||||||||
RBAM_029770__ 851 TGGGAGCCGCGATTGATTTTCTTGAAGAGATCGGACTCGACGAGATTTCC 900
BSNT_04843___ 901 CGCCATGAGCACAAGCTTGCAGCTTATGCGCTTGAACGCTTCCGCCAGCT 950
||.||||||||.|||||||||||.|||||||||||.||.|||...|||||
RBAM_029770__ 901 CGGCATGAGCATAAGCTTGCAGCCTATGCGCTTGACCGTTTCGAGCAGCT 950
BSNT_04843___ 951 TGACGGCGTAACGGTTTACGGGCCGGAAGAGCGTGCCGGGCTTGTCACAT 1000
.||||||||.|||||.|||||.|||.|||||||.||.||.|||||.||||
RBAM_029770__ 951 AGACGGCGTGACGGTATACGGTCCGAAAGAGCGGGCGGGACTTGTGACAT 1000
BSNT_04843___ 1001 TTAACCTTGATGATGTTCATCCGCACGATGTGGCGACTGTGCTTGATGCG 1050
||||.||||||||.|||||.||.||.|||||.||||||||.||.|||||.
RBAM_029770__ 1001 TTAATCTTGATGAGGTTCACCCTCATGATGTCGCGACTGTCCTCGATGCT 1050
BSNT_04843___ 1051 GAGGGAATCGCAGTCAGAGCCGGCCACCATTGTGCGCAGCCGCTGATGAA 1100
|||||.||.||.|||||||||||.||.|||||.||.||||||||.|||||
RBAM_029770__ 1051 GAGGGCATTGCGGTCAGAGCCGGACATCATTGCGCCCAGCCGCTCATGAA 1100
BSNT_04843___ 1101 ATGGCTGGATGTAACTGCTACTGCAAGAGCAAGCTTTTATCTGTATAATA 1150
|||||||||||||.||||||||||.|||||.||.||||||||||||||||
RBAM_029770__ 1101 ATGGCTGGATGTATCTGCTACTGCGAGAGCGAGTTTTTATCTGTATAATA 1150
BSNT_04843___ 1151 CAGAGGAAGAGATTGATAAGCTTGTGGAAGCTCTTCAAAAGACAAAGGAG 1200
|||||||||||||.||||||||.|.||||||.||.|||||||||||||||
RBAM_029770__ 1151 CAGAGGAAGAGATCGATAAGCTCGCGGAAGCCCTCCAAAAGACAAAGGAG 1200
BSNT_04843___ 1201 TATTTTACAAATGTCTTTTAA 1221
||.||||||||||||||||||
RBAM_029770__ 1201 TACTTTACAAATGTCTTTTAA 1221
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