Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04841 and RBAM_029750
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:22
# Commandline: needle
# -asequence dna-align/BSNT_04841___yurU.1.9828.seq
# -bsequence dna-align/RBAM_029750___yurU.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04841___yurU-RBAM_029750___yurU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04841___yurU-RBAM_029750___yurU.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04841___yurU
# 2: RBAM_029750___yurU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1399
# Identity: 1290/1399 (92.2%)
# Similarity: 1290/1399 (92.2%)
# Gaps: 2/1399 ( 0.1%)
# Score: 6002.0
#
#
#=======================================
BSNT_04841___ 1 ATGGCTAAAAAAATGCCTGATATTGGTGAATACAAGTATGGTTTTCACGA 50
||||||||||||||||||||.|||||||||||||||||.|||||||||||
RBAM_029750__ 1 ATGGCTAAAAAAATGCCTGAAATTGGTGAATACAAGTACGGTTTTCACGA 50
BSNT_04841___ 51 CAAGGACGTTTCCATTTTCCGTTCAGAGCGCGGATTGACAAAAGAAATCG 100
.|||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_029750__ 51 TAAGGACGTTTCCATTTTCCGTTCAGAGCGCGGATTGACAAAAGAAATCG 100
BSNT_04841___ 101 TAGAAGAAATTTCTCGCATGAAAGAAGAGCCTCAATGGATGCTTGACTTC 150
|||||||||||||.||||||||||||||||||||||||||||||||.|||
RBAM_029750__ 101 TAGAAGAAATTTCACGCATGAAAGAAGAGCCTCAATGGATGCTTGATTTC 150
BSNT_04841___ 151 CGCTTGAAATCACTTGAGCATTTCTACAATATGCCGATGCCTCAATGGGG 200
|||.|||||||.|||||||||||||||||.|||||||||||.||.|||||
RBAM_029750__ 151 CGCCTGAAATCTCTTGAGCATTTCTACAACATGCCGATGCCGCAGTGGGG 200
BSNT_04841___ 201 CGGAGATTTAAACTCACTGAACTTTGACGAAATTACGTACTACGTAAAAC 250
|||.|||||||||||..|.||||||||||||||||||||.||||||||.|
RBAM_029750__ 201 CGGGGATTTAAACTCTTTAAACTTTGACGAAATTACGTATTACGTAAAGC 250
BSNT_04841___ 251 CGTCTGAGCGTTCAGAGCGTTCTTGGGATGAAGTTCCTGAAGAAATTAAG 300
||||||||||||||||||||||||||||||||||.|||||.||||||||.
RBAM_029750__ 251 CGTCTGAGCGTTCAGAGCGTTCTTGGGATGAAGTGCCTGAGGAAATTAAA 300
BSNT_04841___ 301 CAAACATTCGACAAGCTCGGTATTCCTGAAGCTGAACAAAAATACCTTGC 350
||.|||||||||||.||||||||||||||||||||.||||||||||||||
RBAM_029750__ 301 CAGACATTCGACAAACTCGGTATTCCTGAAGCTGAGCAAAAATACCTTGC 350
BSNT_04841___ 351 GGGTGTTTCTGCTCAGTACGAATCTGAGGTTGTATACCACAACATGAAAG 400
.|||||||||||.|||||||||||.||.|||||.||||||||.|||||||
RBAM_029750__ 351 CGGTGTTTCTGCACAGTACGAATCCGAAGTTGTTTACCACAATATGAAAG 400
BSNT_04841___ 401 AAGATCTTGAAGCGCAAGGCATCGTCTTTAAAGACACTGACAGCGCGCTG 450
||||||||||||.|||||||||||||||.||||||||.||||||||||||
RBAM_029750__ 401 AAGATCTTGAAGAGCAAGGCATCGTCTTCAAAGACACAGACAGCGCGCTG 450
BSNT_04841___ 451 AAAGAGAATGAAGATATTTTCCGTGAGCACTGGGCAAAAGTAATCCCGCC 500
|||||.||||||||.||||||||.|||||||||||.|||||.||.|||||
RBAM_029750__ 451 AAAGAAAATGAAGACATTTTCCGCGAGCACTGGGCGAAAGTCATTCCGCC 500
BSNT_04841___ 501 GACTGATAACAAGTTTGCGGCGCTTAACTCAGCTGTTTGGTCCGGCGGAT 550
||||||||||||||||||||||||.|||||||||||||||||||||||||
RBAM_029750__ 501 GACTGATAACAAGTTTGCGGCGCTGAACTCAGCTGTTTGGTCCGGCGGAT 550
BSNT_04841___ 551 CTTTCATCTACGTGCCTAAAGGCGTGAAGGTTGAAACACCGCTTCAAGCT 600
||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_029750__ 551 CTTTCATCTACGTGCCTAAAGGCGTGAAGGTTGAAACACCGCTTCAAGCT 600
BSNT_04841___ 601 TACTTCCGTATCAACTCTGAGAACATGGGTCAGTTCGAACGTACACTGAT 650
||||||||.|||||||||||.||.||||||||||||||||||||.|||||
RBAM_029750__ 601 TACTTCCGCATCAACTCTGAAAATATGGGTCAGTTCGAACGTACGCTGAT 650
BSNT_04841___ 651 CATTGTTGACGAAGAAGCAAGCGTTCATTATGTTGAAGGCTGTACTGCGC 700
|||.||||||||||||||||||||||||||.||.||.||||||||.||.|
RBAM_029750__ 651 CATCGTTGACGAAGAAGCAAGCGTTCATTACGTAGAGGGCTGTACGGCTC 700
BSNT_04841___ 701 CTGTTTACACAACAAACTCACTTCACAGTGCGGTCGTTGAGATCATCGTG 750
||||.||||||||||||||.||||||||.|||||.|||||.||||||||.
RBAM_029750__ 701 CTGTGTACACAACAAACTCGCTTCACAGCGCGGTTGTTGAAATCATCGTC 750
BSNT_04841___ 751 AAAAAAGGCGGCTACTGCCGTTATACAACGATCCAAAACTGGGCGAACAA 800
|||||||||||||||||||||||||||||.||.|||||||||||||||||
RBAM_029750__ 751 AAAAAAGGCGGCTACTGCCGTTATACAACAATTCAAAACTGGGCGAACAA 800
BSNT_04841___ 801 CGTTTACAACCTTGTAACAAAGCGTACAGTCTGTGAAGAAAACGCAACAA 850
||||||||||||.|||||.||.|||||.||.||||||||||||||.||.|
RBAM_029750__ 801 CGTTTACAACCTAGTAACGAAACGTACGGTTTGTGAAGAAAACGCGACGA 850
BSNT_04841___ 851 TGGAATGGATCGACGGCAACATCGGTTCTAAGCTGACAATGAAATATCCG 900
||||||||.|.|||||.||||||||||||||..||||.||||||||||||
RBAM_029750__ 851 TGGAATGGGTTGACGGAAACATCGGTTCTAAATTGACGATGAAATATCCG 900
BSNT_04841___ 901 GCTTGT-ATCCTAAAAGGCGAAGGCGCGCGCGGTATGACGCTTTCTATCG 949
|| ||| ||.||.|||||.||||||||||||||.||||||||||||||||
RBAM_029750__ 901 GC-TGTCATTCTGAAAGGTGAAGGCGCGCGCGGAATGACGCTTTCTATCG 949
BSNT_04841___ 950 CTCTTGCGGGTAAAGGCCAGCATCAGGATGCAGGTGCGAAAATGATTCAC 999
||||||||||||||||.|||||||||||.|||||.|||||||||||||||
RBAM_029750__ 950 CTCTTGCGGGTAAAGGACAGCATCAGGACGCAGGCGCGAAAATGATTCAC 999
BSNT_04841___ 1000 CTTGCACCAAACACATCATCTACAATCGTATCAAAATCGATTTCAAAACA 1049
||||||||.||.||.|||||.|||||||||||||||||||||||.|||||
RBAM_029750__ 1000 CTTGCACCGAATACGTCATCCACAATCGTATCAAAATCGATTTCGAAACA 1049
BSNT_04841___ 1050 GGGCGGAAAAGTAACGTACCGCGGAATCGTCCACTTCGGACGCAAAGCGG 1099
|||||||||||||||.||||||||.|||||||||||||||||.|||||||
RBAM_029750__ 1050 GGGCGGAAAAGTAACATACCGCGGTATCGTCCACTTCGGACGGAAAGCGG 1099
BSNT_04841___ 1100 AAGGCGCCCGCTCTAACATCGAGTGCGATACGCTCATTATGGATAACAAA 1149
|.||||||||.||.|||||||||||.||||||||||||||||||||||||
RBAM_029750__ 1100 ACGGCGCCCGTTCAAACATCGAGTGTGATACGCTCATTATGGATAACAAA 1149
BSNT_04841___ 1150 TCAACTTCAGACACAATTCCTTACAATGAAATCTTAAATGATAACATTTC 1199
||||||||.||.|||||.|||||||||||||||.|.||.||.||||||||
RBAM_029750__ 1150 TCAACTTCTGATACAATCCCTTACAATGAAATCCTGAACGACAACATTTC 1199
BSNT_04841___ 1200 ATTGGAGCACGAAGCGAAAGTGTCTAAAGTATCTGAAGAGCAGCTCTTCT 1249
|||||||||||||||||||||.||.|||||.||||||||.|||||.||||
RBAM_029750__ 1200 ATTGGAGCACGAAGCGAAAGTATCAAAAGTTTCTGAAGAACAGCTTTTCT 1249
BSNT_04841___ 1250 ACTTGATGAGCCGCGGTATTTCTGAAGAAGAAGCAACTGAAATGATCGTA 1299
|||||||||||||||||||||||||||||||||||||.|||||||||||.
RBAM_029750__ 1250 ACTTGATGAGCCGCGGTATTTCTGAAGAAGAAGCAACAGAAATGATCGTT 1299
BSNT_04841___ 1300 ATGGGCTTCATCGAGCCATTCACAAAAGAGCTTCCAATGGAATACGCAGT 1349
|||||||||||||||||||||||||||||.|||||.||||||||||||||
RBAM_029750__ 1300 ATGGGCTTCATCGAGCCATTCACAAAAGAACTTCCGATGGAATACGCAGT 1349
BSNT_04841___ 1350 TGAAATGAACCGTTTGATTAAGTTCGAAATGGAAGGTTCTATAGGTTAA 1398
||||||||||||||||||||||||||||||||||||.||.||.||||||
RBAM_029750__ 1350 TGAAATGAACCGTTTGATTAAGTTCGAAATGGAAGGCTCCATCGGTTAA 1398
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