Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04831 and RBAM_029660
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:22
# Commandline: needle
# -asequence dna-align/BSNT_04831___yurO.1.9828.seq
# -bsequence dna-align/RBAM_029660___yurO.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04831___yurO-RBAM_029660___yurO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04831___yurO-RBAM_029660___yurO.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04831___yurO
# 2: RBAM_029660___yurO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1313
# Identity: 981/1313 (74.7%)
# Similarity: 981/1313 (74.7%)
# Gaps: 70/1313 ( 5.3%)
# Score: 3580.0
#
#
#=======================================
BSNT_04831___ 1 ----------TTGAA--------GAAAATGTTGTTGTTCTTGATCATTGC 32
..||| |||||.|.|..|.|.|.||.||.||
RBAM_029660__ 1 GTGACAAAGGAGGAAAAGCACCTGAAAAAGCTCATCTGCCTGTTCGTT-- 48
BSNT_04831___ 33 AGCTGT---CAGTATGT---TCA-CCATTGCAGGCTGTTCGAGCCAAAGC 75
|||| |.|||||| ||| || ||.|.||||||.|||||||||
RBAM_029660__ 49 --CTGTTAGCCGTATGTCTGTCAGCC---GCCGCCTGTTCAAGCCAAAGC 93
BSNT_04831___ 76 AGTTCAGCGGACGGAAAGGTGACATTGAAATTTTTCCACAGATGGCCGAA 125
|||||..|.||||||||.|||||.|||||.|||||.|||||.||||||||
RBAM_029660__ 94 AGTTCCTCTGACGGAAAAGTGACCTTGAAGTTTTTTCACAGGTGGCCGAA 143
BSNT_04831___ 126 GGAGCCGGAAAAAAGTTATTTTGAAGAGGTTGTTAAGGAATTTGAAAAAG 175
|||||||||||||||.|||||||||||.|..||.||.|||||||||..|.
RBAM_029660__ 144 GGAGCCGGAAAAAAGCTATTTTGAAGAAGCGGTCAAAGAATTTGAAGCAA 193
BSNT_04831___ 176 AACACCCAGATATCGATATTCAAATTGAAGCCGTTTTAAATGACTCCTAT 225
..||.||.|||||..||||.||||..|||||.||.|||||.||.||.|||
RBAM_029660__ 194 CTCATCCGGATATTCATATCCAAACGGAAGCGGTCTTAAACGATTCTTAT 243
BSNT_04831___ 226 AAAGATAAAATTAAGGTCATGCTGGGAACCACCAGCCCTCCTGACATTTA 275
|||||.||..|.||.||||||||.|||||.||.|||||.|||||.||||.
RBAM_029660__ 244 AAAGACAAGGTGAAAGTCATGCTCGGAACAACGAGCCCCCCTGATATTTT 293
BSNT_04831___ 276 CTTCTCTTGGAGCGATGAGTTTGCTTTTAAATTTATCAGAGGCAATAAAG 325
.||.||.||||||||...||||||||.||||||.||||.|||..||||||
RBAM_029660__ 294 TTTTTCATGGAGCGACCGGTTTGCTTATAAATTCATCAAAGGAGATAAAG 343
BSNT_04831___ 326 CACTTGATCTCTCGTCCTACTACAAAAATGACACCGATTGGTCATCACAG 375
|.||.|||||.|||||.|||||..|..|.||.|..||||||||.||||||
RBAM_029660__ 344 CCCTCGATCTGTCGTCTTACTATCAGCAGGATAAAGATTGGTCCTCACAG 393
BSNT_04831___ 376 CTCGTTCAATCGCAAATTACACCATTTACTTAT----GAAAACAAGCAAT 421
||.||.||.||.|||||.|.|||.|||||..|| ||||| ||.|
RBAM_029660__ 394 CTGGTGCAGTCACAAATCAAACCCTTTACGCATGACGGAAAA----CAGT 439
BSNT_04831___ 422 ATGGCGTACCGTGGCAAATGGACGCTAAATCATTCTTCTATAATAAAGAC 471
|.||.||.|||||||||||||||||||||||||||||.||||||||.|||
RBAM_029660__ 440 ACGGTGTTCCGTGGCAAATGGACGCTAAATCATTCTTTTATAATAAGGAC 489
BSNT_04831___ 472 ATTTTCCAAAAGCTGA-ATCTTG-ATCCCCCGAAGACGTGGGATGAATTA 519
||||| .||.|..|.| || ||| |.||||||..|||.|||||||||.|.
RBAM_029660__ 490 ATTTT-TAATACATTACAT-TTGAAGCCCCCGGCGACATGGGATGAACTG 537
BSNT_04831___ 520 ATCGATGTGTCAAAAAAGCTGAAAGAACATGGCTACACACCGATCAGCTT 569
|||...||.||..|.||..|||||||..|.||.||.|..||||||||.||
RBAM_029660__ 538 ATCACAGTCTCTGAGAAATTGAAAGAGAACGGATATATTCCGATCAGTTT 587
BSNT_04831___ 570 TGGAACAAAGGCGACTTGGACAATCTCGCACTATATCGGCACGCTTAATC 619
.||.|||||.|||.|||||||.||.||.||.||||||||.|||||.||.|
RBAM_029660__ 588 CGGCACAAAAGCGCCTTGGACCATTTCTCATTATATCGGGACGCTGAACC 637
BSNT_04831___ 620 AGCGGATGGTCGATGAAAAAACACGGGAAAAGGACTATAACGCCAAAACG 669
||||.|||||.|||||||||||.||||..||.||.||.|.|.|..||||.
RBAM_029660__ 638 AGCGTATGGTGGATGAAAAAACGCGGGCGAAAGATTACAGCCCGGAAACC 687
BSNT_04831___ 670 GGTGAATTTACTGATGAAGGCTACGTAAAAGCACTTGAAAAGCTTCAAGA 719
||.||.|||||.||.||||||||.||.|||||.||||||||||||||.||
RBAM_029660__ 688 GGGGAGTTTACGGACGAAGGCTATGTCAAAGCGCTTGAAAAGCTTCAGGA 737
BSNT_04831___ 720 GCTGATGCCTTACTTTAATAAACATGTAAACTCCGTCGACCACGAATATG 769
.||..||||.|||||||..||.||.||.||||||||.||.||||||||.|
RBAM_029660__ 738 ACTTCTGCCGTACTTTACAAAGCACGTGAACTCCGTTGATCACGAATACG 787
BSNT_04831___ 770 TGAGACAGCAATTTAAGAGCGG-AAAGTCGGCGATGATATATGCGGAAAC 818
||.|.|||||.||||.|||||| |||| ||||||||||.|||||||||||
RBAM_029660__ 788 TGCGCCAGCAGTTTACGAGCGGCAAAG-CGGCGATGATTTATGCGGAAAC 836
BSNT_04831___ 819 AGCGGAAATCAAGCTGGTTGAACCGGTTAATCTCGGGATGTTCCCATTTC 868
.||.|||||.|||||.||.||||||||.|||||.||..||||.|| ||||
RBAM_029660__ 837 GGCAGAAATTAAGCTCGTCGAACCGGTCAATCTGGGCTTGTTTCC-TTTC 885
BSNT_04831___ 869 CTG-AAATCAGCGGGCAGAAAGGATCTTCAGAAGCGT----TAACGGGAG 913
|.| ||||||||||..|.||.||||||.| .||| |.||.|||.
RBAM_029660__ 886 CCGAAAATCAGCGGCGAAAAGGGATCTCC----CCGTGCACTGACCGGAT 931
BSNT_04831___ 914 CGCCGGAAGGATTCATGATCTCCTCAAGAACAAAACATCCGAAGGAAGCG 963
|.|||||||||||.|||||.|||||||.|||.||.||.|||||.|||||.
RBAM_029660__ 932 CTCCGGAAGGATTTATGATTTCCTCAAAAACGAAGCACCCGAAAGAAGCC 981
BSNT_04831___ 964 ATGGAATTTTTGCAGTTCTTGACGTCGAAAAGAATGGGCGAAAAGCTCGT 1013
|||||||||.|.|||||.||.||.|||||||.||||||.||.|||||..|
RBAM_029660__ 982 ATGGAATTTCTTCAGTTTTTAACCTCGAAAAAAATGGGAGAGAAGCTGAT 1031
BSNT_04831___ 1014 GAAAGATGTCGGGAAATACAGTGCAGTGCAAGGTACGGCTACTGAAGAAA 1063
.|||||.|||||.||||||||.||.||.|||||.|||||.|| |||||
RBAM_029660__ 1032 AAAAGACGTCGGTAAATACAGCGCGGTTCAAGGAACGGCGAC---AGAAA 1078
BSNT_04831___ 1064 ATGCAA--CAGCC---ATTCAGCGTGAAGCCGTTCAGCATATTGTTGATG 1108
| ||| |.||| ||.|||||.||||||||.|||.||||.||....|
RBAM_029660__ 1079 A--CAATTCCGCCCCGATCCAGCGCGAAGCCGTGCAGGATATCGTCCGCG 1126
BSNT_04831___ 1109 CCAAATCAATGGTTCCATGGTTTGATATGGATGTCGATGTTGAAGTCGCA 1158
||.||.|||||||.||.|||||||||||||||||.||.||||||.||||.
RBAM_029660__ 1127 CCGAAACAATGGTGCCGTGGTTTGATATGGATGTTGACGTTGAAATCGCC 1176
BSNT_04831___ 1159 GATGCGTACCTAACAGGCGTCCAGCAAATGCTTGGCGGCGAC-ATGACAC 1207
||||.|||.....|||||||.|||||.|||||.|||||| || |||||||
RBAM_029660__ 1177 GATGTGTATGCGGCAGGCGTTCAGCAGATGCTCGGCGGC-ACAATGACAC 1225
BSNT_04831___ 1208 CGCAGC-AGGTGATGAAAGCCGTTCAAAAGGCAGCAAAGCAGGTGAGGGC 1256
||| || ||||||||||..||||.||.||.||.||....|||||.|..||
RBAM_029660__ 1226 CGC-GCGAGGTGATGAATTCCGTGCAGAAAGCGGCGCGTCAGGTCAAAGC 1274
BSNT_04831___ 1257 GTCAGCTGAATAA 1269
||||.|||||||.
RBAM_029660__ 1275 GTCATCTGAATAG 1287
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