Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04831 and RBAM_029660

See Amino acid alignment / Visit BSNT_04831 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:22
# Commandline: needle
#    -asequence dna-align/BSNT_04831___yurO.1.9828.seq
#    -bsequence dna-align/RBAM_029660___yurO.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04831___yurO-RBAM_029660___yurO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04831___yurO-RBAM_029660___yurO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04831___yurO
# 2: RBAM_029660___yurO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1313
# Identity:     981/1313 (74.7%)
# Similarity:   981/1313 (74.7%)
# Gaps:          70/1313 ( 5.3%)
# Score: 3580.0
# 
#
#=======================================

BSNT_04831___      1 ----------TTGAA--------GAAAATGTTGTTGTTCTTGATCATTGC     32
                               ..|||        |||||.|.|..|.|.|.||.||.||  
RBAM_029660__      1 GTGACAAAGGAGGAAAAGCACCTGAAAAAGCTCATCTGCCTGTTCGTT--     48

BSNT_04831___     33 AGCTGT---CAGTATGT---TCA-CCATTGCAGGCTGTTCGAGCCAAAGC     75
                       ||||   |.||||||   ||| ||   ||.|.||||||.|||||||||
RBAM_029660__     49 --CTGTTAGCCGTATGTCTGTCAGCC---GCCGCCTGTTCAAGCCAAAGC     93

BSNT_04831___     76 AGTTCAGCGGACGGAAAGGTGACATTGAAATTTTTCCACAGATGGCCGAA    125
                     |||||..|.||||||||.|||||.|||||.|||||.|||||.||||||||
RBAM_029660__     94 AGTTCCTCTGACGGAAAAGTGACCTTGAAGTTTTTTCACAGGTGGCCGAA    143

BSNT_04831___    126 GGAGCCGGAAAAAAGTTATTTTGAAGAGGTTGTTAAGGAATTTGAAAAAG    175
                     |||||||||||||||.|||||||||||.|..||.||.|||||||||..|.
RBAM_029660__    144 GGAGCCGGAAAAAAGCTATTTTGAAGAAGCGGTCAAAGAATTTGAAGCAA    193

BSNT_04831___    176 AACACCCAGATATCGATATTCAAATTGAAGCCGTTTTAAATGACTCCTAT    225
                     ..||.||.|||||..||||.||||..|||||.||.|||||.||.||.|||
RBAM_029660__    194 CTCATCCGGATATTCATATCCAAACGGAAGCGGTCTTAAACGATTCTTAT    243

BSNT_04831___    226 AAAGATAAAATTAAGGTCATGCTGGGAACCACCAGCCCTCCTGACATTTA    275
                     |||||.||..|.||.||||||||.|||||.||.|||||.|||||.||||.
RBAM_029660__    244 AAAGACAAGGTGAAAGTCATGCTCGGAACAACGAGCCCCCCTGATATTTT    293

BSNT_04831___    276 CTTCTCTTGGAGCGATGAGTTTGCTTTTAAATTTATCAGAGGCAATAAAG    325
                     .||.||.||||||||...||||||||.||||||.||||.|||..||||||
RBAM_029660__    294 TTTTTCATGGAGCGACCGGTTTGCTTATAAATTCATCAAAGGAGATAAAG    343

BSNT_04831___    326 CACTTGATCTCTCGTCCTACTACAAAAATGACACCGATTGGTCATCACAG    375
                     |.||.|||||.|||||.|||||..|..|.||.|..||||||||.||||||
RBAM_029660__    344 CCCTCGATCTGTCGTCTTACTATCAGCAGGATAAAGATTGGTCCTCACAG    393

BSNT_04831___    376 CTCGTTCAATCGCAAATTACACCATTTACTTAT----GAAAACAAGCAAT    421
                     ||.||.||.||.|||||.|.|||.|||||..||    |||||    ||.|
RBAM_029660__    394 CTGGTGCAGTCACAAATCAAACCCTTTACGCATGACGGAAAA----CAGT    439

BSNT_04831___    422 ATGGCGTACCGTGGCAAATGGACGCTAAATCATTCTTCTATAATAAAGAC    471
                     |.||.||.|||||||||||||||||||||||||||||.||||||||.|||
RBAM_029660__    440 ACGGTGTTCCGTGGCAAATGGACGCTAAATCATTCTTTTATAATAAGGAC    489

BSNT_04831___    472 ATTTTCCAAAAGCTGA-ATCTTG-ATCCCCCGAAGACGTGGGATGAATTA    519
                     ||||| .||.|..|.| || ||| |.||||||..|||.|||||||||.|.
RBAM_029660__    490 ATTTT-TAATACATTACAT-TTGAAGCCCCCGGCGACATGGGATGAACTG    537

BSNT_04831___    520 ATCGATGTGTCAAAAAAGCTGAAAGAACATGGCTACACACCGATCAGCTT    569
                     |||...||.||..|.||..|||||||..|.||.||.|..||||||||.||
RBAM_029660__    538 ATCACAGTCTCTGAGAAATTGAAAGAGAACGGATATATTCCGATCAGTTT    587

BSNT_04831___    570 TGGAACAAAGGCGACTTGGACAATCTCGCACTATATCGGCACGCTTAATC    619
                     .||.|||||.|||.|||||||.||.||.||.||||||||.|||||.||.|
RBAM_029660__    588 CGGCACAAAAGCGCCTTGGACCATTTCTCATTATATCGGGACGCTGAACC    637

BSNT_04831___    620 AGCGGATGGTCGATGAAAAAACACGGGAAAAGGACTATAACGCCAAAACG    669
                     ||||.|||||.|||||||||||.||||..||.||.||.|.|.|..||||.
RBAM_029660__    638 AGCGTATGGTGGATGAAAAAACGCGGGCGAAAGATTACAGCCCGGAAACC    687

BSNT_04831___    670 GGTGAATTTACTGATGAAGGCTACGTAAAAGCACTTGAAAAGCTTCAAGA    719
                     ||.||.|||||.||.||||||||.||.|||||.||||||||||||||.||
RBAM_029660__    688 GGGGAGTTTACGGACGAAGGCTATGTCAAAGCGCTTGAAAAGCTTCAGGA    737

BSNT_04831___    720 GCTGATGCCTTACTTTAATAAACATGTAAACTCCGTCGACCACGAATATG    769
                     .||..||||.|||||||..||.||.||.||||||||.||.||||||||.|
RBAM_029660__    738 ACTTCTGCCGTACTTTACAAAGCACGTGAACTCCGTTGATCACGAATACG    787

BSNT_04831___    770 TGAGACAGCAATTTAAGAGCGG-AAAGTCGGCGATGATATATGCGGAAAC    818
                     ||.|.|||||.||||.|||||| |||| ||||||||||.|||||||||||
RBAM_029660__    788 TGCGCCAGCAGTTTACGAGCGGCAAAG-CGGCGATGATTTATGCGGAAAC    836

BSNT_04831___    819 AGCGGAAATCAAGCTGGTTGAACCGGTTAATCTCGGGATGTTCCCATTTC    868
                     .||.|||||.|||||.||.||||||||.|||||.||..||||.|| ||||
RBAM_029660__    837 GGCAGAAATTAAGCTCGTCGAACCGGTCAATCTGGGCTTGTTTCC-TTTC    885

BSNT_04831___    869 CTG-AAATCAGCGGGCAGAAAGGATCTTCAGAAGCGT----TAACGGGAG    913
                     |.| ||||||||||..|.||.||||||.|    .|||    |.||.|||.
RBAM_029660__    886 CCGAAAATCAGCGGCGAAAAGGGATCTCC----CCGTGCACTGACCGGAT    931

BSNT_04831___    914 CGCCGGAAGGATTCATGATCTCCTCAAGAACAAAACATCCGAAGGAAGCG    963
                     |.|||||||||||.|||||.|||||||.|||.||.||.|||||.|||||.
RBAM_029660__    932 CTCCGGAAGGATTTATGATTTCCTCAAAAACGAAGCACCCGAAAGAAGCC    981

BSNT_04831___    964 ATGGAATTTTTGCAGTTCTTGACGTCGAAAAGAATGGGCGAAAAGCTCGT   1013
                     |||||||||.|.|||||.||.||.|||||||.||||||.||.|||||..|
RBAM_029660__    982 ATGGAATTTCTTCAGTTTTTAACCTCGAAAAAAATGGGAGAGAAGCTGAT   1031

BSNT_04831___   1014 GAAAGATGTCGGGAAATACAGTGCAGTGCAAGGTACGGCTACTGAAGAAA   1063
                     .|||||.|||||.||||||||.||.||.|||||.|||||.||   |||||
RBAM_029660__   1032 AAAAGACGTCGGTAAATACAGCGCGGTTCAAGGAACGGCGAC---AGAAA   1078

BSNT_04831___   1064 ATGCAA--CAGCC---ATTCAGCGTGAAGCCGTTCAGCATATTGTTGATG   1108
                     |  |||  |.|||   ||.|||||.||||||||.|||.||||.||....|
RBAM_029660__   1079 A--CAATTCCGCCCCGATCCAGCGCGAAGCCGTGCAGGATATCGTCCGCG   1126

BSNT_04831___   1109 CCAAATCAATGGTTCCATGGTTTGATATGGATGTCGATGTTGAAGTCGCA   1158
                     ||.||.|||||||.||.|||||||||||||||||.||.||||||.||||.
RBAM_029660__   1127 CCGAAACAATGGTGCCGTGGTTTGATATGGATGTTGACGTTGAAATCGCC   1176

BSNT_04831___   1159 GATGCGTACCTAACAGGCGTCCAGCAAATGCTTGGCGGCGAC-ATGACAC   1207
                     ||||.|||.....|||||||.|||||.|||||.|||||| || |||||||
RBAM_029660__   1177 GATGTGTATGCGGCAGGCGTTCAGCAGATGCTCGGCGGC-ACAATGACAC   1225

BSNT_04831___   1208 CGCAGC-AGGTGATGAAAGCCGTTCAAAAGGCAGCAAAGCAGGTGAGGGC   1256
                     ||| || ||||||||||..||||.||.||.||.||....|||||.|..||
RBAM_029660__   1226 CGC-GCGAGGTGATGAATTCCGTGCAGAAAGCGGCGCGTCAGGTCAAAGC   1274

BSNT_04831___   1257 GTCAGCTGAATAA   1269
                     ||||.|||||||.
RBAM_029660__   1275 GTCATCTGAATAG   1287


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