Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04823 and RBAM_029610
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:21
# Commandline: needle
# -asequence dna-align/BSNT_04823___yurJ.1.9828.seq
# -bsequence dna-align/RBAM_029610___yurJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04823___yurJ-RBAM_029610___yurJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04823___yurJ-RBAM_029610___yurJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04823___yurJ
# 2: RBAM_029610___yurJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1148
# Identity: 814/1148 (70.9%)
# Similarity: 814/1148 (70.9%)
# Gaps: 85/1148 ( 7.4%)
# Score: 2794.5
#
#
#=======================================
BSNT_04823___ 1 ATGGCTTCATTAACATTTGAACACGTCAAAAAATCATATCACTCACAATT 50
|||||.||||||||||||||.||..||||||||.||||...|.|.||||
RBAM_029610__ 1 ATGGCATCATTAACATTTGACCATATCAAAAAAACATACGGCGCCCAAT- 49
BSNT_04823___ 51 AACC-------GTGAAGGACTTTGATTTAGATGTAAAGGATAAGGAGCTT 93
| ||||||||.|||.|.|||||||||||.|||.|||||||.
RBAM_029610__ 50 ---CGGCGGCAGTGAAGGATTTTCACTTAGATGTAAAAGATGAGGAGCTG 96
BSNT_04823___ 94 TTGGTGCTGGTGGGGCCGTCAGGATGCGGAAAATCAACAACGCTGCGGAT 143
.|||||||.||.|||||.||.||.|||||.|||||.||.||.||..|.||
RBAM_029610__ 97 CTGGTGCTTGTCGGGCCCTCCGGCTGCGGCAAATCTACGACACTCAGAAT 146
BSNT_04823___ 144 GGTGGCTGGATTAGAAAGCATTTCTGAAGGAAATCTTCTTATTGATGGGG 193
|.|.||.|||.|.||.|||||||||||.||.||.|||..|||.|||||.|
RBAM_029610__ 147 GATTGCCGGACTGGAGAGCATTTCTGAGGGGAAGCTTTATATCGATGGAG 196
BSNT_04823___ 194 AGCG-GGTCAATGATCTTCCGCCGAAAGAACGTGATATTGCGATGGTATT 242
| || |||.||.|||||.||.|||||.||.||.|||||.||||||||.||
RBAM_029610__ 197 A-CGCGGTGAACGATCTGCCCCCGAAGGATCGCGATATCGCGATGGTTTT 245
BSNT_04823___ 243 CCAGAACTATGCGCTTTATCCGCATATGACGGTTTTTGATAATATGGCGT 292
.|||||.||.|||||.|||||.||.||||||||.||||||||||||||||
RBAM_029610__ 246 TCAGAATTACGCGCTGTATCCCCACATGACGGTGTTTGATAATATGGCGT 295
BSNT_04823___ 293 TTGGATTAAAGCTCAGAAAGATGGCGAAACAGGAAATTGCCGAGCGGGTT 342
|.||.||.||||||||||||.||.|||||.|.|||||.||.|||||.||.
RBAM_029610__ 296 TCGGTTTGAAGCTCAGAAAGCTGCCGAAAAAAGAAATCGCAGAGCGAGTC 345
BSNT_04823___ 343 CATGCGGCAGCCAGA-ATTTTAGAAATTGAACATTTGCTGAAGAGAAAAC 391
|...||||.||| || |||||.|||||.|..|||.||||.|||.|.||||
RBAM_029610__ 346 CGGACGGCCGCC-GATATTTTGGAAATCGGGCATCTGCTCAAGCGGAAAC 394
BSNT_04823___ 392 CGAAGGCGCTCTCCGGCGGGCAGCGGCAAAGGGTGGCGCTTGGCAGGTCG 441
|||||||.||.||.|||||.||||||||..||||.|||||.|||.|||||
RBAM_029610__ 395 CGAAGGCTCTTTCAGGCGGACAGCGGCAGCGGGTTGCGCTCGGCCGGTCG 444
BSNT_04823___ 442 ATTGTGAGGGAGCCGAAGGTCTTTTTAATGGACGAGCCGCTTTCTAATCT 491
||.|||.||||||||||.||.|||.|.|||||||||||||||||.||..|
RBAM_029610__ 445 ATCGTGCGGGAGCCGAAAGTGTTTCTGATGGACGAGCCGCTTTCCAACTT 494
BSNT_04823___ 492 GGATGCAAAACTAAGAGTGACGATGCGGACAGAAATCAGCAAGCTGCACC 541
.||.||.|||.|..|||||||||||||..|.||||||||||||||.||.|
RBAM_029610__ 495 AGACGCGAAATTGCGAGTGACGATGCGCGCCGAAATCAGCAAGCTCCATC 544
BSNT_04823___ 542 AGCGATTAGAGGCAACGATCATTTATGTCACGCATGACCAGACCGAAGCA 591
||||.||..|.||.||.|||.|||||||.||||||||.|||||.|||||.
RBAM_029610__ 545 AGCGTTTGAAAGCGACCATCGTTTATGTGACGCATGATCAGACGGAAGCG 594
BSNT_04823___ 592 ATGACAATGGGAGATCGGATTGTCGTCATGAATGAAGGGGAAATTCAGCA 641
|||||||||||.||.|||||||||||.|||||||||||.||.||||||||
RBAM_029610__ 595 ATGACAATGGGCGACCGGATTGTCGTGATGAATGAAGGAGATATTCAGCA 644
BSNT_04823___ 642 AGTGGCGAAACCTCATGACATTTATCGTTACCCGGCCAATTTGTTTGTCG 691
.|..||.|..||.|||||.|||||||.|||.|||||.|||.|||||||.|
RBAM_029610__ 645 GGCCGCAAGCCCCCATGAGATTTATCATTATCCGGCGAATCTGTTTGTGG 694
BSNT_04823___ 692 CAGGCTTCATTGGCTCTCCCGGAATGAACTTTTTGAAAGGCATCATAGAA 741
|.||.||.||.||.|||||..|.|||||.|||.|.||||||..|||.|||
RBAM_029610__ 695 CGGGTTTTATCGGTTCTCCGAGTATGAATTTTATAAAAGGCGCCATTGAA 744
BSNT_04823___ 742 CA---------GCAGCATGGCGAGCTTTTTTTTACAAATTCTTCGATCCG 782
.| ||| |||| |.||||.|...|||.||..|.||
RBAM_029610__ 745 GAAGGTCACGGGCA--ATGG-------TATTTTGCCGGTTCGTCCGTTCG 785
BSNT_04823___ 783 GCTTCATATTCCTGAAGAAAAAGCAAAGCGGC--------TGAAGGAAAA 824
.||.|..|||||..||||| |||||||| ||.|| ||
RBAM_029610__ 786 TCTGCCCATTCCGAAAGAA-----AAAGCGGCCGTTCTTGTGCAG---AA 827
BSNT_04823___ 825 GGGATATGCCGGAGAACAGATGATTGCCGGTGTACGGCCGGAGCACATCA 874
.|||||...|||..|..||||||||||.||..|.||.||||||||..|.|
RBAM_029610__ 828 AGGATACAGCGGTAAGGAGATGATTGCGGGGCTGCGTCCGGAGCATTTGA 877
BSNT_04823___ 875 CACAAATGACAGGA-AAT--GACCAGTTGTTTGATTCAGTGTTTCAAGCG 921
|.| |..|.||| ||| ||.||...|..|||..|.||||..| |||
RBAM_029610__ 878 CGC---TTGCCGGACAATCAGAGCACCCGCCTGAAGCGGTGTGCC--GCG 922
BSNT_04823___ 922 AAC----GTGGAAGTGAATGAAAATCTGGGCTCGGAGCTCATAGTGCATG 967
| |.||||||...||||||..|.|||.|||||.| ||.|.|
RBAM_029610__ 923 --CTGTGGCGGAAGTATGTGAAAACTTAGGCGCGGAGAT----GTACGT- 965
BSNT_04823___ 968 TCATG------GCTGGGGACGAGCGACTCAAGGTCCGCCTGGACGG---- 1007
||||| || ||.||.||.||..|.|.|.||||.||.|||||
RBAM_029610__ 966 TCATGCGGTGAGC-GGAGATGACCGCATGACGATCCGTCTTGACGGCGCT 1014
BSNT_04823___ 1008 AAACACGCGAATCGATGCAGGCGATTCAATCCAGCTCTCAGTGAAAATGG 1057
..|||.|.|||.| |.||||||.|.||.|.|||..|.||.||.|||.
RBAM_029610__ 1015 TCACAGGTGAAAC----CCGGCGATGCCATTCTGCTTGCGGTCAATATGA 1060
BSNT_04823___ 1058 ACCACGTCGTCTTTTTCGATGTGGAAACGGAAGAGGCTGTGTATTAG- 1104
|||..|.|||||||||.|||||.||.||.|||.|.||.||.|||| |
RBAM_029610__ 1061 ACCGGGCCGTCTTTTTTGATGTCGACACTGAAAACGCCGTATATT-GA 1107
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