Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04797 and RBAM_029510
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:20
# Commandline: needle
# -asequence dna-align/BSNT_04797___pucR.1.9828.seq
# -bsequence dna-align/RBAM_029510___pucR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04797___pucR-RBAM_029510___pucR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04797___pucR-RBAM_029510___pucR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04797___pucR
# 2: RBAM_029510___pucR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1626
# Identity: 1245/1626 (76.6%)
# Similarity: 1245/1626 (76.6%)
# Gaps: 60/1626 ( 3.7%)
# Score: 4721.0
#
#
#=======================================
BSNT_04797___ 1 ATGAATATTTTTGATGTGATGAAAATACCGGCTTTTGAAAACGCCAATTT 50
|||||.||||.|||.||||||||.||.||.||||.|||....|||...||
RBAM_029510__ 1 ATGAACATTTATGACGTGATGAAGATTCCCGCTTATGAGCGGGCCGCATT 50
BSNT_04797___ 51 AATCGCTGGAAAAGCAGGAGG--GGAAAGAGAGGTTCAGCATGTCAATAT 98
||||||.||.|||.|.||.|| || ||.|||||.|||||.|||||.||
RBAM_029510__ 51 AATCGCAGGCAAATCCGGCGGCTGG--AGGGAGGTGCAGCACGTCAACAT 98
BSNT_04797___ 99 GATGGACGCTCCGGATATCGCAGACTTTTTGCATAAGAATGAATTGCTCG 148
||||||.||.|||||.|||||.||.|||||.|||||.||.||||||||||
RBAM_029510__ 99 GATGGATGCGCCGGACATCGCTGATTTTTTACATAAAAACGAATTGCTCG 148
BSNT_04797___ 149 TCACCACCGCCTATCACCTGAAGGATCACCCGCATCAATTATCTGAA--- 195
||||.||.||.||.|||.|||||||.|.||||||.|..| ||||
RBAM_029510__ 149 TCACGACGGCTTACCACTTGAAGGACCGCCCGCAGCTGT----TGAAAGA 194
BSNT_04797___ 196 -CTGATTCGGCAAATGGCAAAACGCGGCTGCGCGGGCCTCGGCATTAAAA 244
.||||.||.|..|||||||||||.|||||||||||.||.||.||.||||
RBAM_029510__ 195 TTTGATCCGCCTCATGGCAAAACGGGGCTGCGCGGGACTGGGGATCAAAA 244
BSNT_04797___ 245 CAAAGCGCTATCTGGAAGATATCCCGAAGGAAATCATCGAACTGGCCGAT 294
|.|||||.|||||..|.|..||.|||||.||...|...||.||.|||||.
RBAM_029510__ 245 CGAAGCGTTATCTTAATGTCATTCCGAAAGATGCCGCGGAGCTTGCCGAC 294
BSNT_04797___ 295 TCATATGCGTTTCCGATCATTGAACTTCCAGAACACATCCGCCTCGGCGA 344
...||||..||||||||.|||||.||.||.|||.|||||.|.|||||.||
RBAM_029510__ 295 CGGTATGAATTTCCGATTATTGAGCTGCCGGAAGACATCAGGCTCGGAGA 344
BSNT_04797___ 345 TATTGTAAATGCCACACTCAGCCACATTCTCGATATGCGTTCTAACGAGC 394
|||.||.||.||||||||.|||||.|||||.|||||||||||.||.||||
RBAM_029510__ 345 TATCGTCAACGCCACACTGAGCCATATTCTTGATATGCGTTCAAATGAGC 394
BSNT_04797___ 395 TGCAGCAAGCCATTTACGCGCACAAAAAATTCACAAACCACATTATGAGC 444
|.|||||.|||||||||||.||.||||||||||||||||||||.||||||
RBAM_029510__ 395 TCCAGCAGGCCATTTACGCCCATAAAAAATTCACAAACCACATCATGAGC 444
BSNT_04797___ 445 GGCAAGGGGCTGCAATCCCTCCTCAAAAAGGTGTCAGACCTCCTTCAGCT 494
|||||.||||||||||||||.||.||.|||.|.||||||.|.||.|.|||
RBAM_029510__ 445 GGCAAAGGGCTGCAATCCCTGCTTAAGAAGCTCTCAGACATTCTCCGGCT 494
BSNT_04797___ 495 TCCCGTGCTGCTGCTTGACCAGCATGCCAAAATGCTGTCCGCGTCTCATC 544
||||||||||||..|.||.||||||.|.|||.|..|.||..||||.||.|
RBAM_029510__ 495 TCCCGTGCTGCTTTTGGATCAGCATACAAAACTCTTATCATCGTCCCACC 544
BSNT_04797___ 545 AGATTTCAGTTGAGAC--------CGAAAAGCTGAAAGGCAC-CCTG-AA 584
..||..|..||||.|| .||||| || .||| .|
RBAM_029510__ 545 GCATACCCATTGACACGTCTTTATTGAAAA----------ACATCTGTTA 584
BSNT_04797___ 585 TACCGTATCCGGGCCATTTTTCACTTGTTTCTCTACAATCTCAGATCAGA 634
|.||.|.||||||||.|.||||||.||.||.||.|...|.||.|| ||||
RBAM_029510__ 585 TTCCCTTTCCGGGCCTTATTTCACCTGCTTTTCCATGCTGTCCGA-CAGA 633
BSNT_04797___ 635 AA-ACATATTCTGTCCTGCCTATTTATAATCACGAAAAAAACTGCGGATA 683
|| .|.||||||||||||||.|||...|||...||||||||||||||.||
RBAM_029510__ 634 AAGGCGTATTCTGTCCTGCCGATTCTGAATGTTGAAAAAAACTGCGGTTA 683
BSNT_04797___ 684 CCTGCTGATACCGGACATGGTCCAGGCCGGCGATAAAGGATTGATCCTCA 733
.|||.||||||||||..||||.|||.|||..||||||||..||||..|.|
RBAM_029510__ 684 TCTGGTGATACCGGAGCTGGTGCAGACCGCTGATAAAGGCATGATTTTGA 733
BSNT_04797___ 734 CGATTGAACAAGCGGCCAACGTCATTTCCTTTGAACTGCTGAAGGAAAAT 783
|.||||||||.|||||.||||||||||||||||||||||||||.||||||
RBAM_029510__ 734 CTATTGAACAGGCGGCTAACGTCATTTCCTTTGAACTGCTGAAAGAAAAT 783
BSNT_04797___ 784 GCGCTGAAGCAGTTCAGCCGGCGGGCCCGCAATGAGTTTTTCAGCAATTT 833
||..|.||.||.||||||.|.|||||.||||||||.||||||||||||||
RBAM_029510__ 784 GCCGTCAAACAATTCAGCAGACGGGCGCGCAATGAATTTTTCAGCAATTT 833
BSNT_04797___ 834 TATTGAGCGGTCCTTTTCTTCAG--ATGACGAAATCAAAAACCGGGCGAA 881
.||.||.||.||.|||.| |.| ||||.||||||||||.|||.||.||
RBAM_029510__ 834 CATCGACCGCTCGTTTAC--CGGCCATGAAGAAATCAAAAGCCGCGCCAA 881
BSNT_04797___ 882 AGAATTCAAGCTGCGCTGGGATCAAAAATACATGTGCATTGCCGGCAAAC 931
|||||||..|||.|||||||||||.|||||||||||||||..|||.||.|
RBAM_029510__ 882 AGAATTCCGGCTCCGCTGGGATCAGAAATACATGTGCATTTGCGGAAAGC 931
BSNT_04797___ 932 TCGATCGCAATGACGAATCAATCAGCTTTACAGAAAATCAGCTCGCTTCC 981
|.||.||.|||||..||.|.|||||||||||.|||||||||||||.||||
RBAM_029510__ 932 TTGACCGAAATGAGAAAACGATCAGCTTTACCGAAAATCAGCTCGTTTCC 981
BSNT_04797___ 982 GA-CAGCGTATTCGAATTTCTTGAAGGTGAATTATCAGCCTTCCCGTTTC 1030
|| || .|||||.||..|.||||||||.||..|.|||.|||||||.||||
RBAM_029510__ 982 GATCA-TGTATTTGATCTGCTTGAAGGGGAGCTGTCATCCTTCCCATTTC 1030
BSNT_04797___ 1031 CGCCTCACTTCTTTATGAAAGGAAATGTCGGCATTATTCTAATCGAGGCG 1080
|.|||||..|||||||.||||||||||||||.|||.||.||||.||.|||
RBAM_029510__ 1031 CCCCTCATCTCTTTATTAAAGGAAATGTCGGTATTCTTTTAATTGAAGCG 1080
BSNT_04797___ 1081 ACAGACAGCTGGAGTGAAATGCACGCCTCGGTGATCAGCTTTTTAGAACA 1130
|||||||||||||.||||||||||||.||.||.|||||||||||.||.||
RBAM_029510__ 1081 ACAGACAGCTGGAATGAAATGCACGCGTCTGTCATCAGCTTTTTGGAGCA 1130
BSNT_04797___ 1131 GTTTCAAACACAGGTCAGCGCTCAATTTAAACGAACCGTGTCCTTTGGCA 1180
||||||||..||||||.|..|.||.||||||||.||.||.|||||.||||
RBAM_029510__ 1131 GTTTCAAAAGCAGGTCCGGACGCAGTTTAAACGGACTGTCTCCTTCGGCA 1180
BSNT_04797___ 1181 TCAGCAATATCTGCCAAAAGCTCATTGATGTTCCCGACGCTTTCACAGAA 1230
||...||.||.|||||||||||.||.||.||.||.||||||||.||.|||
RBAM_029510__ 1181 TCTCAAACATATGCCAAAAGCTGATCGACGTCCCTGACGCTTTTACTGAA 1230
BSNT_04797___ 1231 GCTTCTGATGCTCTGCA----ATCGGGGCATTTGTCGAGAAGCACCGCAT 1276
|||||.||.|| || |||.|||||||||||.||||||.|.|..|
RBAM_029510__ 1231 GCTTCAGACGC----CATTTCATCCGGGCATTTGTCCAGAAGCGCGGAGT 1276
BSNT_04797___ 1277 TTATCCAGGTGTATCACGCCAAAGATGTGCCTGAGCTTCTGCGCTTGCTC 1326
||||.||..|.|||||.||||||||.|||||.|||||.||.|||.||||.
RBAM_029510__ 1277 TTATTCAAATCTATCATGCCAAAGACGTGCCGGAGCTGCTCCGCCTGCTT 1326
BSNT_04797___ 1327 CCGGTTGAGGATTTGAAGAAATTTTACAACTCCACGCTTCAGAGCCTCGC 1376
||||..||.|||.||||||||||||||.|..||||.||.||.|||||.||
RBAM_029510__ 1327 CCGGCGGAAGATGTGAAGAAATTTTACCAAGCCACCCTCCAAAGCCTGGC 1376
BSNT_04797___ 1377 TGA-----AAAACAGCAGGAGGATCAAAGCCTGCTTCATACGCTTTCCGT 1421
.|| ||| |||||||.||||||||||||||||||||.||.||
RBAM_029510__ 1377 CGACCGGCAAA-----AGGAGGACCAAAGCCTGCTTCATACGCTGTCTGT 1421
BSNT_04797___ 1422 CTATTTAGAGACACACTGCCAAATTTCAGAGACGGCAAAGCGTCTGTACG 1471
.|||.|.|||||.||||||||.||||||||.|||||.|||||.|||||||
RBAM_029510__ 1422 TTATCTGGAGACCCACTGCCAGATTTCAGAAACGGCTAAGCGCCTGTACG 1471
BSNT_04797___ 1472 TTCATCGCAATACGGTCATATACCGCCTTGAAAAATGCGAAGAGCTTCTG 1521
|.|||||.||||||||.||.||.||..|.|||||||||||.||.||.||.
RBAM_029510__ 1472 TCCATCGAAATACGGTGATCTATCGTTTAGAAAAATGCGAGGAACTGCTC 1521
BSNT_04797___ 1522 GGTAAAAGCTTAAAAGATCCTGAAACAACGATGCGTTTGCGGCTTGC-CT 1570
||.|||||||||||||||||.||.||.||||||||..|||||||.|| ||
RBAM_029510__ 1522 GGCAAAAGCTTAAAAGATCCGGAGACGACGATGCGCCTGCGGCTCGCGCT 1571
BSNT_04797___ 1571 TACGTATGCAGCGGCTGATCAGCTAA 1596
.| |.|||||||||||||||.|.|||
RBAM_029510__ 1572 GA-GAATGCAGCGGCTGATCGGTTAA 1596
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