Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04791 and RBAM_029470

See Amino acid alignment / Visit BSNT_04791 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:19
# Commandline: needle
#    -asequence dna-align/BSNT_04791___yunE.1.9828.seq
#    -bsequence dna-align/RBAM_029470___yunE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04791___yunE-RBAM_029470___yunE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04791___yunE-RBAM_029470___yunE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04791___yunE
# 2: RBAM_029470___yunE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 846
# Identity:     640/846 (75.7%)
# Similarity:   640/846 (75.7%)
# Gaps:          48/846 ( 5.7%)
# Score: 2411.0
# 
#
#=======================================

BSNT_04791___      1 ATGTCGTTTGTGATTTTGGTCGTACTGGGATTAATCGCAGGTACGGTAGG     50
                     |||||.|.|.|.||||||.||.||.|.|||||.|||||.||.|||||.||
RBAM_029470__      1 ATGTCTTATCTTATTTTGATCATATTAGGATTTATCGCGGGAACGGTCGG     50

BSNT_04791___     51 AAGTCTGATCGGGCTTGGCGGCGGAATTGTCATTGTGCCGTCTCTGATGT    100
                     .||.||||||||||||||.||.||||||.||||.||||||.|..||.|.|
RBAM_029470__     51 CAGCCTGATCGGGCTTGGGGGAGGAATTATCATCGTGCCGGCAATGCTCT    100

BSNT_04791___    101 TTTTAAGCACAGTGACGCAGCTGTTTCAGGATGTGACGCCGCAGGTTGCG    150
                     .|||||||||..||||.|.|.|.||.||.||.||.||.||||||..|||.
RBAM_029470__    101 ATTTAAGCACGATGACTCCGTTTTTCCATGACGTAACACCGCAGACTGCC    150

BSNT_04791___    151 ATTGGAACTTCGCTTTTGGTCATTATTTTTACGGGCCTTTCTTCAACTTT    200
                     ||.||.||.||.||||||||.|||||||||||||||||.||.||||||.|
RBAM_029470__    151 ATCGGCACGTCCCTTTTGGTGATTATTTTTACGGGCCTGTCATCAACTCT    200

BSNT_04791___    201 GGCTTATATTAAATATAAAACCGTTGATTATAAGAGCGGGCTCATTTTCT    250
                     |||.|||||.|||||||||||||||||.||.||.|||||.||.||.||.|
RBAM_029470__    201 GGCCTATATGAAATATAAAACCGTTGACTACAAAAGCGGACTGATCTTTT    250

BSNT_04791___    251 TTATCGGTTCAGGTCCCGGCAGCATGATCGGGGCTTACGTGTCAAAGCTG    300
                     ||||||||||.||.||.||.|||||.|||||.||.||..||||.||.||.
RBAM_029470__    251 TTATCGGTTCCGGCCCGGGAAGCATCATCGGCGCGTATTTGTCTAAACTT    300

BSNT_04791___    301 TTCAATTCAAACTCGTTTTCCGTTTGGTTTGGCATTTTTATGATTCTGAT    350
                     ||.|||.|..|..||||||||||.|||||.||..|||||||||||.||||
RBAM_029470__    301 TTTAATGCGCATACGTTTTCCGTCTGGTTCGGACTTTTTATGATTTTGAT    350

BSNT_04791___    351 TT-CATTATCCTTAATGCTGAAAGCGAAAGC----CCGGCCAATCAACAA    395
                     || ||||| |.|||||||||||.||||||||    ||||    ||||.||
RBAM_029470__    351 TTCCATTA-CATTAATGCTGAAGGCGAAAGCAAAACCGG----TCAATAA    395

BSNT_04791___    396 AGCGCACAAAGGAATTATCCGGACATTTCAGGATGATGCCGGTGAGCCTT    445
                     ||||||.|||||.||.||||||||||.|.|||||||..|.|||||||.||
RBAM_029470__    396 AGCGCATAAAGGCATGATCCGGACATATGAGGATGAATCGGGTGAGCTTT    445

BSNT_04791___    446 ATACGTACTCATA--------TCAGGCCTCTGTGGGTATTGCCATTGCCT    487
                     ||||.||.||.||        |||  ||      |||||.|..|||||||
RBAM_029470__    446 ATACATATTCGTACCGTATTTTCA--CC------GGTATCGTGATTGCCT    487

BSNT_04791___    488 TTGTTGTCGGTTTTTTAGGCGGACTTTTCGGTATAGGCGGCGGATCACTG    537
                     ||.|.||||||||.||.|||||.||||||||.||.||||||||.||.||.
RBAM_029470__    488 TTTTCGTCGGTTTATTGGGCGGTCTTTTCGGCATTGGCGGCGGCTCTCTT    537

BSNT_04791___    538 ATGGTTCCGGCGATGATGCTGTTATTTCTGTTTCCGCCGAAGGTTGCGGT    587
                     |||||||||||.|||||||||||||||.||||.||||||||.||.||.||
RBAM_029470__    538 ATGGTTCCGGCCATGATGCTGTTATTTTTGTTCCCGCCGAAAGTGGCTGT    587

BSNT_04791___    588 GGCAACGTCCATGTTTATTATTTTCCTGTCTTCTATGACAGGGTCTGTTT    637
                     |||.|||||.|||.|.|||||||||.|.||.||..||||.||.||.||.|
RBAM_029470__    588 GGCGACGTCAATGCTCATTATTTTCTTATCCTCCGTGACGGGTTCCGTGT    637

BSNT_04791___    638 CACATAT----GATTTCCGGG-CACGTCAATTGGCTGTACGCCCTCGCG-    681
                     |||||||    ||     ||| ||.||||||||||||||.||.|| |.| 
RBAM_029470__    638 CACATATCGCAGA-----GGGCCATGTCAATTGGCTGTATGCGCT-GTGC    681

BSNT_04791___    682 CTTGTGCCCGGCGCTTGGTTCGGCGGAAAGCTTGGCGCCGCCATCAACAG    731
                     ||.||.||.|||||.|||||||||||.||..|.|||||.....||     
RBAM_029470__    682 CTCGTTCCGGGCGCGTGGTTCGGCGGCAAAATGGGCGCGTGGGTC-----    726

BSNT_04791___    732 AAAAA-----TGCAGACGAAAACGATCGTTATGATCATGCGGATCGTATT    776
                     ||.||     |||||||||||||||||||..|..||||||||.||||.||
RBAM_029470__    727 AATAAGCGGGTGCAGACGAAAACGATCGTGCTTTTCATGCGGGTCGTCTT    776

BSNT_04791___    777 GATTTTGATCGGCTGCCAGCTCATTTATGAAGGCATTTTCAGCTGA    822
                     |||||||||||||||..|..|.||||||.||||.||.|||||||.|
RBAM_029470__    777 GATTTTGATCGGCTGTGAATTGATTTATCAAGGGATATTCAGCTAA    822


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