Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04790 and RBAM_029460
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:19
# Commandline: needle
# -asequence dna-align/BSNT_04790___yunD.1.9828.seq
# -bsequence dna-align/RBAM_029460___yunD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04790___yunD-RBAM_029460___yunD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04790___yunD-RBAM_029460___yunD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04790___yunD
# 2: RBAM_029460___yunD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1430
# Identity: 1019/1430 (71.3%)
# Similarity: 1019/1430 (71.3%)
# Gaps: 76/1430 ( 5.3%)
# Score: 3451.0
#
#
#=======================================
BSNT_04790___ 1 ATGAAGGAGAAGCTCCGCTTATATCATACAAATGATTTGCACAGCCATTT 50
|||...|||||||||||.|||||||||||.||||||||||||||||||||
RBAM_029460__ 1 ATGTTAGAGAAGCTCCGTTTATATCATACGAATGATTTGCACAGCCATTT 50
BSNT_04790___ 51 TGAAAACTGGCTGAAAATTGTAGATTATATCGAGCAGAAAAGAAAAGAGC 100
.|||||.||||.||||||||||.|||||||..|||||||.|||||.||.|
RBAM_029460__ 51 CGAAAATTGGCCGAAAATTGTACATTATATTAAGCAGAAGAGAAATGAAC 100
BSNT_04790___ 101 ATCAGTCAGACGGCGAAGAGACGCTCGTTTTTGATATTGGCGATCATCTT 150
||.|...||||||.||.||.||.|||||.||.||.||.|||||||||.|.
RBAM_029460__ 101 ATGAAAAAGACGGGGAGGAAACACTCGTATTCGACATCGGCGATCATATG 150
BSNT_04790___ 151 GATCGTTTTCAATTCGTGACAGAGGCGACATTCGGAAAAGCGAATGTTGA 200
||.||.||.|||.|..|.||.||.|||||.|||||.|||||||||||.||
RBAM_029460__ 151 GACCGATTCCAAATGATAACGGAAGCGACCTTCGGCAAAGCGAATGTCGA 200
BSNT_04790___ 201 TCTCTTAAACCGCCTTCACATTGATGGAGCGGCGATCGGCAATAACGAAG 250
..|.||||||||.|||.|.||.||||..||.||..||||.|||||.||||
RBAM_029460__ 201 CTTGTTAAACCGGCTTGAGATCGATGCGGCTGCCGTCGGGAATAATGAAG 250
BSNT_04790___ 251 GGATTACGCTTCCGCATGAAGAGCTTGCTGCCTTATATGATCATGCTGAA 300
|.||||||||.||.||.||.|||||.||.|..||||||...|||||.|..
RBAM_029460__ 251 GAATTACGCTGCCTCACGATGAGCTGGCGGATTTATATACCCATGCCGCG 300
BSNT_04790___ 301 TTTCCTGTCATCGTCTCTAACCTGTTTGATAAAAACGGAAACCGTCCGTC 350
|||||.|||||.||.||.|||||||||||.....|||||.|.||.|||..
RBAM_029460__ 301 TTTCCCGTCATTGTGTCCAACCTGTTTGACGCGGACGGACAGCGGCCGGA 350
BSNT_04790___ 351 CTGGGCGGTGCCTTACCATATCAAATCATTGAAAAACGGTATGTCCATTG 400
.|||||.|.|||.|||...||||||.||.||||||||||.|||.|| |
RBAM_029460__ 351 ATGGGCCGAGCCCTACGTGATCAAAACACTGAAAAACGGGATGACC---G 397
BSNT_04790___ 401 CTTTCTTA---GGTGTAACTGTGCCGTATTATCCTGTATATGACAAGCTG 447
|...|.|| ||.||.||.||||||||||||||.||.|||.|.||.||.
RBAM_029460__ 398 CCGGCATACTCGGCGTCACGGTGCCGTATTATCCCGTCTATCAAAAACTC 447
BSNT_04790___ 448 GGATGGACAGTAACGGATGCTCTTG----AAAGCATAAAGGAAACCATTC 493
||.|||||.||.|||||||| | |||||||..|.|||.|..||.
RBAM_029460__ 448 GGCTGGACGGTGACGGATGC----GGAAAAAAGCATTCAAGAATCACTTG 493
BSNT_04790___ 494 TGGATGTGAAAGGGC-AGGCTGATATTATCGTTCTGCTGTCACATTTAGG 542
..|||.| .|||||| |.||.||.||.|||.|||||||.||.||||||||
RBAM_029460__ 494 ACGATAT-CAAGGGCAAAGCGGACATCATCATTCTGCTTTCTCATTTAGG 542
BSNT_04790___ 543 CATTCTTGATGATCAGGCAGTGGCTGAAGCGGTGCCTGAGATTGATGTAA 592
|.|..|.|||||.|.|||.|..||.|||....|.||.||.||.|||||.|
RBAM_029460__ 543 CCTGATCGATGACCGGGCCGCAGCGGAAAAATTTCCGGACATCGATGTCA 592
BSNT_04790___ 593 TCCTCGAATCACATACCCATCATTTGCTTGAAGATGGACAAGTGGTGAAT 642
|.||.|||||||||||.||.||..|.|||||.||.|||||.|...|.||.
RBAM_029460__ 593 TTCTTGAATCACATACGCACCACCTTCTTGAGGACGGACAGGACATAAAC 642
BSNT_04790___ 643 GGGGTACTGCTGGCCAGCGCCGAGAAATACGGGCATTATGTCGGCTGTGT 692
||.|||.||||.||..|.||.||||||||||||.|.||||||||||||||
RBAM_029460__ 643 GGTGTATTGCTTGCATGTGCGGAGAAATACGGGAACTATGTCGGCTGTGT 692
BSNT_04790___ 693 AGAAATCACGGTGGACAGCGTA-CAGCGAAGCATCATCAGCAAAACGGCT 741
.||..|.||..|.||.||.|.| || ||||.|||..||||||||..|||.
RBAM_029460__ 693 CGAGCTGACAATAGAAAGTGAATCA-CGAACCATTGTCAGCAAACAGGCA 741
BSNT_04790___ 742 TCTGTGCAGAACATGGCGGAATGGACAGGAGAATCCGCAGAAACAAAAGC 791
|||||.|||||.|||||.||.|||..|||.||||..|.|||.||....||
RBAM_029460__ 742 TCTGTACAGAAAATGGCTGATTGGCAAGGGGAATGTGAAGATACGGCGGC 791
BSNT_04790___ 792 GTTTCTCAATGAAAAAGAACGAGAAGCCGAGGAGAA---GCTGTCCGATG 838
.|||||.||.||.||||||||.||||| |||.|| |||.|||||..
RBAM_029460__ 792 TTTTCTGAAAGAGAAAGAACGGGAAGC---GGAAAACCTGCTCTCCGAAC 838
BSNT_04790___ 839 CCGTTGCAGAGCT---TGCACAAGATGCTGAGGTGAAGTGGTTTGAAGAA 885
..||.||..|.|| || ||||.||.|..||||||||||||||.|||
RBAM_029460__ 839 AAGTGGCCAACCTGAATG---AAGAAGCCGGCGTGAAGTGGTTTGAGGAA 885
BSNT_04790___ 886 TCAGAGCTGCCTTTGCTTTTGGCATACGC-CTTAAAGGAATGGTGCGAGA 934
||....||.||..|.||.||.||..|.|| ||.|||.| .||||||| |.
RBAM_029460__ 886 TCGCCCCTCCCGCTTCTATTAGCCGAGGCGCTGAAAAG-CTGGTGCG-GC 933
BSNT_04790___ 935 CG-GACATCAGTATGGTCAATTCAGGTGTCATTCTCGGTCCGCT--AAAA 981
.| ||..||||.|||||.||||||||.||.|||.|.||.||..| |.||
RBAM_029460__ 934 TGTGAAGTCAGCATGGTGAATTCAGGCGTTATTTTGGGGCCTTTACAGAA 983
BSNT_04790___ 982 GCAGGTCCTGTGACAAAGCTGGATCTGCACCGCATCTGTCCGCATCCGAT 1031
| ||.|||||.||||||||.||.||||||||.|||||.||.||||||||
RBAM_029460__ 984 G--GGGCCTGTCACAAAGCTTGACCTGCACCGTATCTGCCCTCATCCGAT 1031
BSNT_04790___ 1032 CAACCCGGTGGCTGTCCGCCTGAC-GGGAGAAGAATTGAAGGAAACCATT 1080
|||.||||||||.||.||.||..| ||.|| .|||.|..|||||||.||.
RBAM_029460__ 1032 CAATCCGGTGGCCGTTCGTCTTTCAGGCAG-GGAACTCCAGGAAACAATC 1080
BSNT_04790___ 1081 GTCCATGCCGCTTCCGAACAAATGGAGCAGCTCCGGATCAAAGGACTTGG 1130
..|||.|||||.||.|||||||||||||||||.|||||.|||||.||.||
RBAM_029460__ 1081 AGCCAGGCCGCCTCGGAACAAATGGAGCAGCTGCGGATTAAAGGCCTCGG 1130
BSNT_04790___ 1131 CTTCCGCGGAGAAGTGATGGGGAAAATGGTGTATGCCGGCGTTGAGGTAG 1180
|||||||||.|||||||||||.|..|||||.||||||||.|..||||.||
RBAM_029460__ 1131 CTTCCGCGGGGAAGTGATGGGCAGGATGGTATATGCCGGAGCGGAGGCAG 1180
BSNT_04790___ 1181 AAACGAAACGG----CTCGATGACGGGATCACCCACGTCACCCGGATC-- 1224
|..| ||| ||.||.|||||..|.||.|| ||.|| ||
RBAM_029460__ 1181 AGGC----CGGCATTCTTGAAGACGGTGTGACGCA--TCTCC----TCAA 1220
BSNT_04790___ 1225 ----ACACTGAACGGGGAAGATATTAA-----AAAACATAAACAATACTC 1265
|.|.|||||||.|||||.|||.| |....|| ||||||
RBAM_029460__ 1221 TGTGAAAGTGAACGGAGAAGAGATTGATCCGGAGCGGAT-----ATACTC 1265
BSNT_04790___ 1266 CGTTGCGGTGCTTGATATGTTTACGCTCGGCAAACTGTTTCCGTTGATTC 1315
.|||||.||.||.|||||||||||.|||||.||.|||||.||.|..||.|
RBAM_029460__ 1266 GGTTGCCGTTCTCGATATGTTTACACTCGGAAAGCTGTTCCCTTACATCC 1315
BSNT_04790___ 1316 GCGATGCTGCAGAAAAAGAATATTTTATGCCGGAATTTTTGCGGGATCTG 1365
|||||.|...||||||..||||.|||||||||||.|||||..||||||||
RBAM_029460__ 1316 GCGATTCAAAAGAAAAGCAATACTTTATGCCGGAGTTTTTAAGGGATCTG 1365
BSNT_04790___ 1366 CTTGCTTGGAAGCTTGCACA------ATAA 1389
||.||.||||||||.||.|| .|||
RBAM_029460__ 1366 CTCGCCTGGAAGCTCGCGCAGCAGCCGTAA 1395
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