Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04774 and RBAM_029370
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:18
# Commandline: needle
# -asequence dna-align/BSNT_04774___hom.1.9828.seq
# -bsequence dna-align/RBAM_029370___hom.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04774___hom-RBAM_029370___hom.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04774___hom-RBAM_029370___hom.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04774___hom
# 2: RBAM_029370___hom
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1302
# Identity: 1063/1302 (81.6%)
# Similarity: 1063/1302 (81.6%)
# Gaps: 0/1302 ( 0.0%)
# Score: 4359.0
#
#
#=======================================
BSNT_04774___ 1 TTGAAAGCGATTCGTGTAGGGCTTTTAGGTTTAGGTACCGTCGGAAGCGG 50
|||.|||||||||||.|.||.||.|||||..|.||.|||||.||||||||
RBAM_029370__ 1 TTGGAAGCGATTCGTATTGGACTGTTAGGACTGGGAACCGTGGGAAGCGG 50
BSNT_04774___ 51 TGTCGTTAAAATTATTCAAGACCATCAGGATAAGCTTATGCATCAGGTCG 100
.|||||.||||||||.|||||.||||||||||||||||||||.|||||||
RBAM_029370__ 51 AGTCGTCAAAATTATACAAGATCATCAGGATAAGCTTATGCACCAGGTCG 100
BSNT_04774___ 101 GCTGTCCGGTTACGATAAAAAAAGTGCTTGTAAAAGATTTAGAGAAAAAG 150
||||||||||.|||||.|||||||||||.||.||||||.|.||.|||||.
RBAM_029370__ 101 GCTGTCCGGTGACGATCAAAAAAGTGCTAGTTAAAGATATTGATAAAAAA 150
BSNT_04774___ 151 AGAGAAGTAGATTTGCCGAAGGAAGTGCTCACGACAGAAGTGTATGATGT 200
.||||.|.|||..|||||||.||||||||.|||||||||||.||||||||
RBAM_029370__ 151 CGAGACGCAGACCTGCCGAAAGAAGTGCTGACGACAGAAGTCTATGATGT 200
BSNT_04774___ 201 CATTGATGATCCAGATGTTGATGTCGTCATCGAGGTGATCGGCGGCGTTG 250
.||.|||||.||.||.||.||.||..|.||.||.||.||||||||.||.|
RBAM_029370__ 201 GATCGATGACCCTGAAGTCGACGTGATTATTGAAGTCATCGGCGGTGTCG 250
BSNT_04774___ 251 AACAGACAAAACAATATTTGGTCGACGCGCTGAGATCGAAAAAGCATGTT 300
|||||||.||.||||||.|..|.||.||..|||.|.|||||||.||||||
RBAM_029370__ 251 AACAGACGAAGCAATATCTTCTTGATGCCTTGAAAGCGAAAAAACATGTT 300
BSNT_04774___ 301 GTCACAGCAAACAAGGACTTAATGGCTGTGTACGGCTCCGAGCTGCTTGC 350
||.||.|||||.||.||..|.||.||.||.||.|||||.|||||..|.||
RBAM_029370__ 301 GTGACCGCAAATAAAGATCTGATCGCCGTATATGGCTCAGAGCTTTTAGC 350
BSNT_04774___ 351 CGAAGCGAAGGAAAATGGATGCGATATCTACTTTGAAGCCAGTGTTGCCG 400
||..||.|||||||||||.||.||..|.||.|.||||||.|||||.||||
RBAM_029370__ 351 CGCCGCAAAGGAAAATGGCTGTGACTTGTATTATGAAGCGAGTGTCGCCG 400
BSNT_04774___ 401 GCGGGATTCCGATTCTGCGCACGTTAGAGGAAGGCCTCTCATCAGATCGA 450
||||.||.||||||.|.||||||.|.||.||||||||.||.||.||.||.
RBAM_029370__ 401 GCGGAATCCCGATTTTACGCACGCTCGAAGAAGGCCTTTCCTCTGACCGG 450
BSNT_04774___ 451 ATTACAAAAATGATGGGAATTGTGAACGGCACAACAAACTTTATCTTAAC 500
||.|||||||||||||||||.||.|||||.||.||.|||||.||||||||
RBAM_029370__ 451 ATCACAAAAATGATGGGAATCGTCAACGGAACGACGAACTTCATCTTAAC 500
BSNT_04774___ 501 CAAAATGATCAAAGAGAAAAGCCCATACGAGGAAGTGCTCAAGGAAGCGC 550
.||||||||.|||||.||||||||.||.||.||||||||.||||||||||
RBAM_029370__ 501 GAAAATGATTAAAGAAAAAAGCCCGTATGAAGAAGTGCTGAAGGAAGCGC 550
BSNT_04774___ 551 AGGATCTCGGTTTTGCCGAAGCTGATCCGACTTCTGACGTGGAAGGGCTT 600
||||||||||.||.||.|||||.||.|||||..|.||.||.||||||||.
RBAM_029370__ 551 AGGATCTCGGATTCGCGGAAGCGGACCCGACCGCCGATGTAGAAGGGCTC 600
BSNT_04774___ 601 GACGCCGCACGGAAAATGGCGATATTGGCGCGCCTCGGCTTCTCGATGAA 650
||.|||||.||.||.||||||||.||.||.||.|||||||||||.|||||
RBAM_029370__ 601 GATGCCGCGCGCAAGATGGCGATTTTAGCCCGTCTCGGCTTCTCTATGAA 650
BSNT_04774___ 651 CGTGGATCTGGAAGACGTCAAAGTAAAGGGGATCTCCCAAATTACAGACG 700
.||.||||||||.||.|||||||||||.||.||.||||..||.||.||.|
RBAM_029370__ 651 TGTCGATCTGGACGATGTCAAAGTAAAAGGAATTTCCCGGATAACGGATG 700
BSNT_04774___ 701 AGGACATCAGCTTCAGCAAACGCCTCGGCTATACAATGAAGCTGATCGGG 750
|.||||||||||||||||||||.|||||||||||.||||||||||||||.
RBAM_029370__ 701 AAGACATCAGCTTCAGCAAACGGCTCGGCTATACGATGAAGCTGATCGGC 750
BSNT_04774___ 751 ATTGCTCAGCGTGACGGCAGCAAAATCGAGGTCAGCGTACAGCCGACACT 800
||.||.||||||||.|.||..||||||||.||||||||.|||||||||||
RBAM_029370__ 751 ATCGCCCAGCGTGATGACAATAAAATCGAAGTCAGCGTTCAGCCGACACT 800
BSNT_04774___ 801 GCTTCCTGACCATCATCCGCTTTCTGCTGTTCATAATGAGTTTAACGCTG 850
|||.||.||.|||||.|||||.|||||.||.|||||.||||||||.||.|
RBAM_029370__ 801 GCTGCCGGATCATCACCCGCTCTCTGCGGTGCATAACGAGTTTAATGCCG 850
BSNT_04774___ 851 TTTATGTATACGGCGAGGCTGTCGGTGAGACGATGTTCTACGGGCCGGGA 900
||||.||.|||||.||.||.|||||.||.||||||||.|||||.||.|||
RBAM_029370__ 851 TTTACGTGTACGGAGAAGCCGTCGGCGAAACGATGTTTTACGGCCCCGGA 900
BSNT_04774___ 901 GCCGGAAGCATGCCGACAGCGACATCCGTTGTTTCTGACCTCGTCGCTGT 950
|||||||||||||||||.||||||||.||.|||||.||.||.|||||.||
RBAM_029370__ 901 GCCGGAAGCATGCCGACTGCGACATCGGTCGTTTCCGATCTGGTCGCGGT 950
BSNT_04774___ 951 CATGAAAAATATGCGCCTCGGTGTAACCGGCAACAGCTTTGTCGGGCCGC 1000
|||||||||.|||||.|||||.||||.|||.|||||||||||||..||||
RBAM_029370__ 951 CATGAAAAACATGCGTCTCGGCGTAAACGGAAACAGCTTTGTCGCCCCGC 1000
BSNT_04774___ 1001 AATATGAGAAAAATATGAAATCGCCGTCTGACATTTATGCACAGCAGTTT 1050
|.|.|||.|.||||.||||...|||||||||.||.|||||.|||||||||
RBAM_029370__ 1001 AGTTTGAAAGAAATCTGAAGCAGCCGTCTGATATCTATGCCCAGCAGTTT 1050
BSNT_04774___ 1051 TTAAGAATTCATGTAAAAGATGAGGTTGGTTCATTCTCGAAAATTACATC 1100
|||||||||||.||.|||||..||||.||.||.||.||.|||||.|||||
RBAM_029370__ 1051 TTAAGAATTCACGTCAAAGACCAGGTCGGCTCTTTTTCAAAAATCACATC 1100
BSNT_04774___ 1101 TGTGTTCTCAGAGCGGGGCGTGAGCTTTGAAAAAATCCTTCAGCTGCCAA 1150
.|..|||||||||||.|||||.||||||||||||||.||.||||||||.|
RBAM_029370__ 1101 GGCCTTCTCAGAGCGCGGCGTCAGCTTTGAAAAAATTCTGCAGCTGCCGA 1150
BSNT_04774___ 1151 TTAAAGGCCATGATGAGTTAGCTGAAATCGTAATTGTCACACATCATACA 1200
|.|||||||||||.||..|.||.||||||||.||.|||||.|||||||||
RBAM_029370__ 1151 TCAAAGGCCATGACGACCTCGCGGAAATCGTCATCGTCACGCATCATACA 1200
BSNT_04774___ 1201 TCAGAAGCTGATTTCAGTGATATCCTGCAAAACCTAAATGATTTGGAAGT 1250
||.||||..|||||||||||.||.|||||||||.|||||||..|.|||||
RBAM_029370__ 1201 TCGGAAGAAGATTTCAGTGACATTCTGCAAAACTTAAATGACCTCGAAGT 1250
BSNT_04774___ 1251 CGTTCAAGAAGTCAAAAGCACATATCGTGTAGAAGGGAACGGTTGGAGCT 1300
|||.||||||||.||||||||||||||.||||||||||||||||||||||
RBAM_029370__ 1251 CGTACAAGAAGTAAAAAGCACATATCGCGTAGAAGGGAACGGTTGGAGCT 1300
BSNT_04774___ 1301 AA 1302
||
RBAM_029370__ 1301 AA 1302
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