Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_04773 and RBAM_029360

See Amino acid alignment / Visit BSNT_04773 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:18
# Commandline: needle
#    -asequence dna-align/BSNT_04773___thrC.1.9828.seq
#    -bsequence dna-align/RBAM_029360___thrC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04773___thrC-RBAM_029360___thrC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04773___thrC-RBAM_029360___thrC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04773___thrC
# 2: RBAM_029360___thrC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1068
# Identity:     853/1068 (79.9%)
# Similarity:   853/1068 (79.9%)
# Gaps:           9/1068 ( 0.8%)
# Score: 3441.0
# 
#
#=======================================

BSNT_04773___      1 TTGGAGCTAATGTGGAAAGGACTTATCCATCAATATAAAGAATTTTTACC     50
                              ||||||||||||||.|||||||||||||||||||||.|.||
RBAM_029360__      1 ---------ATGTGGAAAGGACTCATCCATCAATATAAAGAATTTCTGCC     41

BSNT_04773___     51 TGTAACAGATCAAACACCGGCGCTAACTTTACATGAAGGAAACACACCTC    100
                     .||.||.|||||.||.|||||.||.||.||.||||||||.|||||.||.|
RBAM_029360__     42 GGTGACGGATCAGACGCCGGCCCTGACATTGCATGAAGGCAACACGCCGC     91

BSNT_04773___    101 TTATTCACCTGCCGAAGCTGTCTGAGCAGCTCGGAATTGAGCTTCATGTC    150
                     |.||||||||||||||.||.||.||..|||||||||||||.||.|||||.
RBAM_029360__     92 TGATTCACCTGCCGAAACTTTCCGAAAAGCTCGGAATTGAACTGCATGTG    141

BSNT_04773___    151 AAAACGGAAGGCGTCAATCCTACGGGATCATTTAAAGATCGCGGAATGGT    200
                     |||||.||.|||||.|||||.||||||||.||||||||.|||||.|||||
RBAM_029360__    142 AAAACAGAGGGCGTTAATCCGACGGGATCCTTTAAAGACCGCGGCATGGT    191

BSNT_04773___    201 TATGGCTGTGGCAAAGGCAAAAGAAGAAGGCAATGACACGATTATGTGCG    250
                     .|||||.||.||.||.||.|||||||||||||||||.||.||.|||||||
RBAM_029360__    192 CATGGCGGTCGCCAAAGCGAAAGAAGAAGGCAATGATACCATCATGTGCG    241

BSNT_04773___    251 CGTCAACAGGTAACACTTCCGCTGCTGCGGCAGCATATGCAGCCCGTGCT    300
                     |.||.|||||.|||||.|||||.||.||.||.|||||.||.||..|.||.
RBAM_029360__    242 CCTCTACAGGGAACACATCCGCGGCAGCTGCGGCATACGCGGCGAGAGCC    291

BSNT_04773___    301 AACATGAAATGCATTGTCATCATCCCGAACGGAAAAATTGCATTTGGAAA    350
                     ..||||||||||||.||||||||||||.||||||||||.||.||.|||||
RBAM_029360__    292 GGCATGAAATGCATCGTCATCATCCCGGACGGAAAAATCGCCTTCGGAAA    341

BSNT_04773___    351 ACTCGCTCAAGCTGTCATGTACGGAGCCGAGATTATCGCAATTGACGGAA    400
                     |||.||.||.||.|||||||||||.||.||.||.|||||.||||||||||
RBAM_029360__    342 ACTTGCGCAGGCCGTCATGTACGGTGCGGAAATCATCGCGATTGACGGAA    391

BSNT_04773___    401 ACTTTGACGATGCGCTTAAAATTGTCCGTTCCATCTGTGAGAAATCACCG    450
                     ||||||||||.|||||....||.|||||.||.||.||.||.|||||||||
RBAM_029360__    392 ACTTTGACGACGCGCTGGCCATCGTCCGGTCGATTTGCGAAAAATCACCG    441

BSNT_04773___    451 ATTGCCCTTGTCAACTCAGTCAACCCTTACCGCATTGAAGGCCAAAAAAC    500
                     |||||..|.||.||.|||||.|||||||||||.||||||||.||||||||
RBAM_029360__    442 ATTGCATTAGTGAATTCAGTAAACCCTTACCGGATTGAAGGGCAAAAAAC    491

BSNT_04773___    501 TGCTGCCTTCGAAGTGTGCGAACAGCTGGGGGAAGCGCCTGATGTTTTAG    550
                     .||.|||||.|||||.|||||||||||.||.||||||||.||..||.|.|
RBAM_029360__    492 AGCGGCCTTTGAAGTATGCGAACAGCTCGGCGAAGCGCCGGACATTCTGG    541

BSNT_04773___    551 CGATCTCGGTCGGAAATGCTGGAAACATCACTGCGTACTGGAAGGGCTTC    600
                     |||||.||||.|||||.||.||.||.|||||.||.||||||||.||.|||
RBAM_029360__    542 CGATCCCGGTAGGAAACGCCGGGAATATCACGGCCTACTGGAAAGGGTTC    591

BSNT_04773___    601 AAGGAATATCATGAGAAAAACGGCACAGGCCTTCCGAAAATGCGCGGCTT    650
                     ||.|||||.|||||||||||||||||.||.||||||||.||||||||.||
RBAM_029360__    592 AAAGAATACCATGAGAAAAACGGCACCGGACTTCCGAAGATGCGCGGTTT    641

BSNT_04773___    651 TGAAGCTGAGGGTGCGGCGGCAATCGTGCGCAATGAAGTGATTGAAAATC    700
                     |||.||.||.|||.|.|||||.|||||.|||...|||||.|||.||||||
RBAM_029360__    642 TGAGGCGGAAGGTTCTGCGGCTATCGTCCGCGGCGAAGTCATTAAAAATC    691

BSNT_04773___    701 CGGAAACAATAGCGACAGCCATTCGTATCGGAAACCCGGCAAGCTGGGAC    750
                     |.||.||..|.|||||.||.||.||.|||||.||.||.||.|||||||||
RBAM_029360__    692 CAGAGACCGTTGCGACGGCAATCCGAATCGGGAATCCTGCCAGCTGGGAC    741

BSNT_04773___    751 AAAGCTGTAAAGGCAGCCGAGGAATCCAATGGGAAAATTGACGAAGTCAC    800
                     |||||.||....||.||.||.|||||....||.||||||||.||||||||
RBAM_029360__    742 AAAGCGGTGCTCGCTGCGGAAGAATCAGCCGGAAAAATTGATGAAGTCAC    791

BSNT_04773___    801 TGATGATGAAATCCTTCACGCATATCAGCTGATCGCCCGTGTAGAAGGCG    850
                     .|||||.||.||.||||||||.|||||||||||.|||||||.||||||||
RBAM_029360__    792 AGATGAAGACATTCTTCACGCTTATCAGCTGATTGCCCGTGAAGAAGGCG    841

BSNT_04773___    851 TGTTTGCAGAACCGGGTTCTTGCGCGTCTATCGCAGGAGTGCTGAAACAG    900
                     |||||||.||||||||.||.||.||.||.|||||.||.||..||||||||
RBAM_029360__    842 TGTTTGCCGAACCGGGCTCCTGTGCATCCATCGCCGGCGTTTTGAAACAG    891

BSNT_04773___    901 GTGAAATCCGGAGAAATTCCGAAAGGCAGCAAGGTCGTAGCTGTGTTAAC    950
                     ||.||||||||.||||||||.|||||||||||.||.||.||.||.||.||
RBAM_029360__    892 GTAAAATCCGGTGAAATTCCAAAAGGCAGCAAAGTTGTCGCAGTTTTGAC    941

BSNT_04773___    951 AGGAAACGGACTGAAAGATCCGAACACAGCGGTCGACATTTCAGAAATCA   1000
                     .||||||||.|||||||||||||||||.||.||.|||.|.||.||.||.|
RBAM_029360__    942 CGGAAACGGCCTGAAAGATCCGAACACGGCTGTAGACGTATCTGACATAA    991

BSNT_04773___   1001 AGCCTGTCACATTGCCGACTGATGAAGACAGCATCCTTGAATATGTAAAA   1050
                     |.||..|.||..|||||||.|||||.|||||.||.||.|||||..||||.
RBAM_029360__    992 AACCGATTACGCTGCCGACAGATGAGGACAGTATTCTGGAATACTTAAAT   1041

BSNT_04773___   1051 GGAGCGGCCCGTGTATGA   1068
                     ||||||||.|||||||||
RBAM_029360__   1042 GGAGCGGCGCGTGTATGA   1059


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.