Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04765 and RBAM_029310
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:18
# Commandline: needle
# -asequence dna-align/BSNT_04765___yutJ.1.9828.seq
# -bsequence dna-align/RBAM_029310___yutJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04765___yutJ-RBAM_029310___yutJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04765___yutJ-RBAM_029310___yutJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04765___yutJ
# 2: RBAM_029310___yutJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1074
# Identity: 845/1074 (78.7%)
# Similarity: 845/1074 (78.7%)
# Gaps: 12/1074 ( 1.1%)
# Score: 3303.5
#
#
#=======================================
BSNT_04765___ 1 ATGAAAAAATTGGTCTTGATCGGCGGAGGTTACGGGAACATGCGTGTTCT 50
||||||||||||||||||||||||||.||||||||.||||||||.||.||
RBAM_029310__ 1 ATGAAAAAATTGGTCTTGATCGGCGGGGGTTACGGAAACATGCGGGTGCT 50
BSNT_04765___ 51 TCATCGCTTATTGCCAAACCAGCTGCC-TGATGATGTTTCAATCACGTTA 99
.||.||||||.||||.||||||||.|| |.| |||.|.||.||||||.|.
RBAM_029310__ 51 GCACCGCTTACTGCCGAACCAGCTTCCGTCA-GATATATCCATCACGCTG 99
BSNT_04765___ 100 ATTGACAGAAATCCTTATCACTGCTTGAAAACAGAATATTATGCCCTTGC 149
|||||||||||.||.|||||||||||.|||||||||||||||||.||.||
RBAM_029310__ 100 ATTGACAGAAACCCGTATCACTGCTTAAAAACAGAATATTATGCGCTCGC 149
BSNT_04765___ 150 CGCAGGCACAATTTCTGACCATCATATCAGAGTGTCATTCCCAGAGCACC 199
|||.|||||.||||||||.|||||||||||.|||||.||.||.|||||.|
RBAM_029310__ 150 CGCCGGCACGATTTCTGATCATCATATCAGGGTGTCTTTTCCTGAGCATC 199
BSNT_04765___ 200 CTCGCCTGGATGTCCAATACGGTGATATCACATCAATTGATATTGTAC-A 248
|....||||||||.|||||||||||..|..|.||..|.|| .|| |
RBAM_029310__ 200 CGAATCTGGATGTTCAATACGGTGAGGTGGCTTCCGTCGA-----CACGA 244
BSNT_04765___ 249 AAAACAA----GTGCTGTTCCAAGATCGTGAACCGATTTCTTACGATGAC 294
||||||| ||.|||||.||.||.||.|||||||||||||||||||||
RBAM_029310__ 245 AAAACAAACAGGTTCTGTTTCATGACCGCGAACCGATTTCTTACGATGAC 294
BSNT_04765___ 295 GCCGTAATCGGGCTCGGCTGTGAGGATAAATATCACAACGTGCCGGGAGC 344
||.||.|||||.||.|||||.||||||||.|||||.||||||||.||.||
RBAM_029310__ 295 GCGGTGATCGGACTGGGCTGCGAGGATAAGTATCATAACGTGCCCGGCGC 344
BSNT_04765___ 345 GCCTGAATTCACCTACAGTATTCAAACCATCGATCAGTCCCGCGAAACCT 394
|||.|||...||.|||||.|||||.|||||.||||||||.||||||.|||
RBAM_029310__ 345 GCCGGAACATACTTACAGCATTCAGACCATTGATCAGTCACGCGAAGCCT 394
BSNT_04765___ 395 ACCAAAAGCTGAATAATCTGAGCGCTAATGCCACCGTCGCCATTGTCGGA 444
|.|||||||||||.||.||..||||.|||||..|.|||||.||.||||||
RBAM_029310__ 395 ATCAAAAGCTGAACAACCTCGGCGCCAATGCATCTGTCGCTATCGTCGGA 444
BSNT_04765___ 445 GCGGGCTTAAGCGGCGTTGAGCTTGCAAGTGAATTGAGAGAAAGCCGTGA 494
|||||.|||||||||||.||||||||.||||||||.|||||.||||||||
RBAM_029310__ 445 GCGGGATTAAGCGGCGTGGAGCTTGCCAGTGAATTAAGAGAGAGCCGTGA 494
BSNT_04765___ 495 TGACCTGAACATTATTTTGTTCGACCGCGGTAATCTCATTTTATCAAGCT 544
.||.|||||.|||||.||.||.|||||.||..|.||.|||||||||||||
RBAM_029310__ 495 CGATCTGAAGATTATGTTATTTGACCGGGGCGACCTGATTTTATCAAGCT 544
BSNT_04765___ 545 TTCCCGAGCGTTTAAGCAAATATGTGCAAAAATGGTTCGAAGAGCACGGT 594
||||..|..|..|.|||||.|||||.||.||||||||.|||||.|||||.
RBAM_029310__ 545 TTCCGAAAAGACTCAGCAAGTATGTTCAGAAATGGTTTGAAGAACACGGC 594
BSNT_04765___ 595 GTCCGCATTATTAACAGGGCAAATATCACAAAAGTAGAAGAAGGCGTTGT 644
|||..||||||.||.|..||.|||||.||||||||.|||||.||..|.||
RBAM_029310__ 595 GTCACCATTATCAATAATGCGAATATTACAAAAGTGGAAGACGGGATCGT 644
BSNT_04765___ 645 GTATAACCACGATGATCCGATTTCTGCAGACGCCATCGTGTGGACAGCCG 694
.|||||.||.|||||....||..|.||.||.||||||||||||||.||.|
RBAM_029310__ 645 TTATAATCATGATGAAGGAATAGCGGCCGATGCCATCGTGTGGACGGCGG 694
BSNT_04765___ 695 GCATCCAGCCAAACAAAGTCGTCAGAGACTTAGATGTGGAGAAGGACGCA 744
|.||.|||||.||.||||.|||||||||..|.||.|..||.||.||..|.
RBAM_029310__ 695 GAATTCAGCCGAATAAAGCCGTCAGAGAACTGGACGCTGAAAAAGATCCG 744
BSNT_04765___ 745 CAAGGGCGTATTGTATTAACGCCTCATCATAATCTTCCAGGTGATGAACA 794
||.|||||.||..|.|||||.||.|||||.||.|||||.||.|||||.||
RBAM_029310__ 745 CAGGGGCGCATCATTTTAACACCGCATCACAACCTTCCGGGCGATGAGCA 794
BSNT_04765___ 795 TCTGTACGTTGTCGGCGATTGCGCCAGCCTTCCTCATGCACCGAGCGCCC 844
|.|.|||||.|||||.||||||||.|||||.||.|||||.||||||||||
RBAM_029310__ 795 TGTTTACGTCGTCGGTGATTGCGCGAGCCTGCCGCATGCGCCGAGCGCCC 844
BSNT_04765___ 845 AGCTGGCAGAGGCTCAAGCAGAGCAGATTGTCCAAATCTTGCAAAAACGC 894
|||||||.||.||.||.||.||.||.|||||.||.|||.|.|..||||||
RBAM_029310__ 845 AGCTGGCTGAAGCACAGGCGGAACAAATTGTGCAGATCCTCCTGAAACGC 894
BSNT_04765___ 895 TGGAATGGGGAAGCCCTGCCTGAATCAATGCCTCAGTTTAAGCTGAAAGG 944
|||||....||||..|||||.|||.|||||||.||.||||||||||||||
RBAM_029310__ 895 TGGAACAATGAAGAGCTGCCGGAAACAATGCCGCAATTTAAGCTGAAAGG 944
BSNT_04765___ 945 CGTCCTCGGTTCACTCGGAAAAAAAGCCGGCTTCGGGCTTGTTGCTGACC 994
|||.|||||||||||||||||||||||.||||||||.|||||....||||
RBAM_029310__ 945 CGTTCTCGGTTCACTCGGAAAAAAAGCGGGCTTCGGTCTTGTCAACGACC 994
BSNT_04765___ 995 GTCCGCTGATCGGCCGTGTTCCGCGTATGCTGAAATCCGGCTTGCTGTGG 1044
|||||||.|||||.|||||.||.|||.|..|.|||||.|||.|..|.|||
RBAM_029310__ 995 GTCCGCTCATCGGGCGTGTGCCCCGTTTATTAAAATCAGGCCTTTTATGG 1044
BSNT_04765___ 1045 ATGTATAAACACCATAACGGTTAA 1068
|||||.||.||.||||||||.|.|
RBAM_029310__ 1045 ATGTACAAGCATCATAACGGCTGA 1068
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