Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04761 and RBAM_029290
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:17
# Commandline: needle
# -asequence dna-align/BSNT_04761___yutK.1.9828.seq
# -bsequence dna-align/RBAM_029290___yutK.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04761___yutK-RBAM_029290___yutK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04761___yutK-RBAM_029290___yutK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04761___yutK
# 2: RBAM_029290___yutK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1229
# Identity: 985/1229 (80.1%)
# Similarity: 985/1229 (80.1%)
# Gaps: 25/1229 ( 2.0%)
# Score: 3894.0
#
#
#=======================================
BSNT_04761___ 1 ATGAATGTTCTGTGGGGGCTGCTGGGCGCAGTTGCGATCATT-GCTATCG 49
.|||||.|..|.|||||||||||.||.||||||||.|| ||| ||.||.|
RBAM_029290__ 1 TTGAATATCGTTTGGGGGCTGCTCGGGGCAGTTGCTAT-ATTAGCCATTG 49
BSNT_04761___ 50 CGTTTTTATTTTCAGAAAAGAAAAGCAATATTAAGATAAGAACCGTCATC 99
|.|||||.||.|||||.|||||||||||.|||||..|..||||||||||.
RBAM_029290__ 50 CTTTTTTGTTATCAGAGAAGAAAAGCAAAATTAACCTGCGAACCGTCATT 99
BSNT_04761___ 100 GTTGGTTTATGCACACAGGTGGCGTTTGGATACATCGTGTTGAAATGGGA 149
||.||||||||...|||..||||.||.||||.||||||.||.||.|||||
RBAM_029290__ 100 GTCGGTTTATGTTTACAAATGGCCTTCGGATTCATCGTATTAAAGTGGGA 149
BSNT_04761___ 150 AGCGGGACGCGCTGTTTTTTTATGGTTTTCAAGCCGTGTACAGCTTCTGA 199
.||.||.||.||.||.|||||||||||.|||||||||||.||||||||.|
RBAM_029290__ 150 CGCCGGCCGGGCCGTATTTTTATGGTTCTCAAGCCGTGTGCAGCTTCTCA 199
BSNT_04761___ 200 TTGACTATGCGAATGAAGGCATCAGTTTTATTTTTGGACCGCTTCTAAAG 249
||||.||||||||.|||||||||||.|||||||||||.|||||..||||.
RBAM_029290__ 200 TTGATTATGCGAACGAAGGCATCAGCTTTATTTTTGGCCCGCTGTTAAAA 249
BSNT_04761___ 250 GTCGG-AGACAGTCCGGCATTTGCATTAAGTGTACTGCCCGTTATCATTT 298
||.|| || |||.|||||.|||||..|.||.||.|||||.||.||.||.|
RBAM_029290__ 250 GTGGGCAG-CAGCCCGGCTTTTGCGCTGAGCGTTCTGCCGGTCATTATCT 298
BSNT_04761___ 299 TCTTCTCAGCACTGATTGCAGTTTTATATCATTTGAAAATCATGCAGCTC 348
|.||||||||.||||||||.|||||.|||||.||||||||||||||||||
RBAM_029290__ 299 TTTTCTCAGCGCTGATTGCCGTTTTGTATCACTTGAAAATCATGCAGCTC 348
BSNT_04761___ 349 GTTTTCCGTGTCATTGGCGGCGGATTGTCGAAGCTCCTTGGAACAAGCAA 398
.|.||.||.|||||.||.||||||.||||.||.||.|||||.|||||||.
RBAM_029290__ 349 ATCTTTCGCGTCATCGGAGGCGGACTGTCAAAACTTCTTGGGACAAGCAG 398
BSNT_04761___ 399 AACGGAATCTCTGGCGGCTGCTGCCAATATTTTTGTAGGACAATCAGAAT 448
|||||||||.||.|||||.|||||.|||||||||||.|||||.||.||||
RBAM_029290__ 399 AACGGAATCGCTTGCGGCGGCTGCGAATATTTTTGTCGGACAGTCTGAAT 448
BSNT_04761___ 449 CTCCGTTAGTGATCAAACCCCTGATTGCCGGGCTGACGCGCTCTGAGTTG 498
|.|||.|.|..||.|||||.||||||||.||..||||.||.||.|||.||
RBAM_029290__ 449 CACCGCTTGCCATTAAACCGCTGATTGCGGGATTGACCCGTTCCGAGCTG 498
BSNT_04761___ 499 TTTACGATTATGACGAGCGGTCTATCGGCAGTTGCGGGATCTAC-CTTGT 547
||||||||||||||||||||.||.|||||.||.|||||.||.|| ||| |
RBAM_029290__ 499 TTTACGATTATGACGAGCGGCCTTTCGGCTGTAGCGGGTTCGACGCTT-T 547
BSNT_04761___ 548 TTGGGTACGCGCTTCTTGGTATTCCGATTGAATATTTGCTGGCGGCCAGC 597
|.||.|||||.||..|.||.||||||||.|||||..||||||||||||||
RBAM_029290__ 548 TCGGTTACGCCCTGTTAGGCATTCCGATCGAATACCTGCTGGCGGCCAGC 597
BSNT_04761___ 598 TTTATGGCTGCTCCAGCTGGACTAGTCTTTGGTAAATTGATTATACCCGA 647
||||||||.|||||.||.||.||.||.||.||.|||.|..|.|||||.||
RBAM_029290__ 598 TTTATGGCGGCTCCCGCCGGTCTCGTGTTCGGAAAAATTTTAATACCTGA 647
BSNT_04761___ 648 AACGGAAAAAACGCAAACCGTAAAAAGCGATTTCAAAATG---GATGAAG 694
|||||||||||||||.||..|||||.|||||||.||.||| ||.||||
RBAM_029290__ 648 AACGGAAAAAACGCAGACGATAAAAGGCGATTTTAATATGGACGAAGAAG 697
BSNT_04761___ 695 GCGAAGGCGCAGCCAATGTCATTGACGCAGCTGCAAAGGGAGCGTCAACA 744
||||||||||.||.|||||.|||||.|||||.|||||.||.|||||.||.
RBAM_029290__ 698 GCGAAGGCGCCGCTAATGTGATTGATGCAGCGGCAAAAGGCGCGTCCACG 747
BSNT_04761___ 745 GGACTGCAAATTGCGTTAAACGTTGGGGCGATGCTGCTTGCGTTTGTTGC 794
||.||.||.|||||..||||.||.||.||.|||||||||||||||||.||
RBAM_029290__ 748 GGCCTTCAGATTGCTCTAAATGTCGGCGCCATGCTGCTTGCGTTTGTCGC 797
BSNT_04761___ 795 GTTAATCGCTGTAGTAAACGGTATTCTCGGCGG----GGCTTTCGGCTTG 840
|.|.|||||.|||||.|||||.||||||||||| || |||||.|
RBAM_029290__ 798 GCTCATCGCCGTAGTGAACGGAATTCTCGGCGGAATCGG----CGGCTGG 843
BSNT_04761___ 841 TTCGGTTTAAAAGGCGTA--ACATTAGAATCCATTCTCGGTTATGTGTTT 888
||||||||.||| |.|| |||||||||||||||||||||||.||||||
RBAM_029290__ 844 TTCGGTTTCAAA--CATATTACATTAGAATCCATTCTCGGTTACGTGTTT 891
BSNT_04761___ 889 TCTCCTATCGCCTTTTTGATTGGCGTGCCTTGGCATGAAGC-ATTGCAGG 937
||.||.|||||.|||.|.||.|||||.|||||||||||||| .|||.| |
RBAM_029290__ 892 TCACCGATCGCATTTGTAATCGGCGTTCCTTGGCATGAAGCGCTTGGA-G 940
BSNT_04761___ 938 CGGGAAGCTATATCGGTCAGAAATTGGTGCTGAATGAGTTTGTCGCTTAT 987
||||||||||||||||.||||||.|.||||||||||||||||||||||||
RBAM_029290__ 941 CGGGAAGCTATATCGGACAGAAACTTGTGCTGAATGAGTTTGTCGCTTAT 990
BSNT_04761___ 988 TCTAACTTCGGTCCGCACATCGGCGAGTTTTCTAAGAAAACTGCTACCAT 1037
||.||||||||.|||||.||.|..||.||||||||.|||||..||||.||
RBAM_029290__ 991 TCAAACTTCGGGCCGCATATTGCGGACTTTTCTAAAAAAACGTCTACGAT 1040
BSNT_04761___ 1038 TATCAGTTTCGCGTTATGCGGATTCGCCAATTTTTCATCAATTGCGATTA 1087
||||||.||.|||.|.||||||||.|||||.||.||.||.||||||||||
RBAM_029290__ 1041 TATCAGCTTTGCGCTGTGCGGATTTGCCAACTTCTCTTCGATTGCGATTA 1090
BSNT_04761___ 1088 TGCTTGGTACGCTGGGCGGATTAGCACCCAGCCGCCGTTCAGATATCGCG 1137
||||.||.||.||||||||.||.||.||.|||||||||||.||.||.|||
RBAM_029290__ 1091 TGCTCGGCACACTGGGCGGTTTGGCCCCAAGCCGCCGTTCGGACATTGCG 1140
BSNT_04761___ 1138 CGTCTCGGCCTGAAG-GCTGTTCTTGCAGGAACATTAGCCAATCTGCTCA 1186
||.||||| .|.||| ||.|||.||||.||||||.|.||.||.||.||||
RBAM_029290__ 1141 CGCCTCGG-ATTAAGAGCGGTTATTGCGGGAACACTCGCAAACCTTCTCA 1189
BSNT_04761___ 1187 GCGCAGCCATTGCCGGCATGTTTATATAA 1215
||||.||.|||||||||||||||||.||.
RBAM_029290__ 1190 GCGCGGCGATTGCCGGCATGTTTATTTAG 1218
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